Wall clock time and date at job start Sun Mar 29 2020 21:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46874 * 2 1 4 4 C 1.53005 * 109.46727 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46875 * 179.97438 * 4 3 2 6 6 C 1.46899 * 111.00107 * 190.00314 * 5 4 3 7 7 C 1.50702 * 109.47363 * 71.54253 * 6 5 4 8 8 H 1.07998 * 120.00098 * 3.98911 * 7 6 5 9 9 C 1.37879 * 119.99918 * 183.98338 * 7 6 5 10 10 N 1.31515 * 119.99920 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00074 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47268 * 89.99563 * 11 9 7 13 13 H 1.48496 * 109.47397 * 209.99738 * 11 9 7 14 14 H 1.48502 * 109.47255 * 329.99594 * 11 9 7 15 15 C 1.46896 * 111.00316 * 66.04660 * 5 4 3 16 16 C 1.50699 * 109.47227 * 199.57120 * 15 5 4 17 17 C 1.34518 * 125.79416 * 89.99721 * 16 15 5 18 18 C 1.41385 * 106.84055 * 180.02562 * 17 16 15 19 19 C 1.34518 * 106.84155 * 359.97438 * 18 17 16 20 20 O 1.34302 * 125.78406 * 269.69022 * 16 15 5 21 21 H 1.08995 * 109.46983 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47451 * 300.00787 * 1 2 3 23 23 H 1.09009 * 109.46567 * 60.00142 * 1 2 3 24 24 H 1.09001 * 109.47471 * 239.99878 * 2 1 3 25 25 H 1.08997 * 109.46938 * 119.99307 * 2 1 3 26 26 H 1.08996 * 109.47576 * 59.99899 * 3 2 1 27 27 H 1.08999 * 109.47036 * 299.98945 * 3 2 1 28 28 H 1.09001 * 109.47304 * 60.00070 * 4 3 2 29 29 H 1.08997 * 109.47251 * 299.99409 * 4 3 2 30 30 H 1.09003 * 109.47511 * 191.55094 * 6 5 4 31 31 H 1.09006 * 109.46720 * 311.54797 * 6 5 4 32 32 H 0.96994 * 119.99676 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.47313 * 79.56176 * 15 5 4 34 34 H 1.09003 * 109.47062 * 319.56561 * 15 5 4 35 35 H 1.07992 * 126.57498 * 0.03662 * 17 16 15 36 36 H 1.08001 * 126.57520 * 179.97438 * 18 17 16 37 37 H 1.07997 * 125.78830 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8275 0.0000 6 6 5.5086 2.8736 -0.2376 7 6 5.7937 2.5177 -1.6740 8 1 4.9774 2.3440 -2.3595 9 6 7.0966 2.4140 -2.1130 10 7 7.3454 2.1039 -3.3666 11 14 8.5084 2.7138 -0.9271 12 1 8.8879 1.4344 -0.2756 13 1 9.6738 3.2549 -1.6716 14 1 8.0859 3.6905 0.1087 15 6 3.7097 3.5103 1.2527 16 6 3.7804 5.0017 1.0487 17 6 2.7678 5.7894 0.6441 18 6 3.2725 7.1089 0.5880 19 6 4.5631 7.0488 0.9623 20 8 4.8637 5.7708 1.2457 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8898 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9337 0.9286 -0.8891 29 1 3.9330 0.9289 0.8909 30 1 5.8789 3.8779 -0.0317 31 1 6.0072 2.1607 0.4192 32 1 8.2620 2.0306 -3.6753 33 1 4.4102 3.2167 2.0345 34 1 2.6981 3.2316 1.5481 35 1 1.7623 5.4742 0.4076 36 1 2.7264 7.9950 0.2999 37 1 5.2413 7.8867 1.0283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078665810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:44 Heat of formation + Delta-G solvation = 7.370404 kcal Electronic energy + Delta-G solvation = -16986.338980 eV Core-core repulsion = 14344.174716 eV Total energy + Delta-G solvation = -2642.164264 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.10644 -37.43346 -34.38934 -32.69875 -32.37575 -30.35122 -28.98357 -27.01856 -24.69750 -22.70474 -21.33201 -20.72508 -20.55260 -19.58802 -17.12619 -16.69726 -15.69822 -15.30238 -14.83102 -14.46861 -14.18017 -13.80387 -13.43684 -12.79102 -12.56687 -12.40315 -12.29131 -12.22394 -12.08389 -11.71702 -11.53979 -10.96363 -10.82964 -10.75622 -10.65400 -10.21522 -9.93321 -9.83595 -9.50442 -9.26903 -8.54671 -8.06414 -7.45452 -6.02920 -3.99540 2.15430 3.01855 3.29381 3.37316 3.42328 3.43827 4.44669 4.72965 5.09800 5.17142 5.28876 5.30189 5.32434 5.38322 5.40806 5.60540 5.73861 5.76610 5.93379 5.99598 6.05644 6.12659 6.16986 6.27629 6.31138 6.41001 6.49836 6.64212 6.71584 6.86771 6.89734 6.99186 7.57423 7.64301 7.85553 7.99870 8.66788 9.06827 9.59346 11.10268 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.010217 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.903727 B = 2739.882110 C = 4479.146681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.117 4.117 4 C 0.063 3.937 5 N -0.523 5.523 6 C 0.161 3.839 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.871 3.129 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.123 3.877 16 C 0.019 3.981 17 C -0.206 4.206 18 C -0.216 4.216 19 C -0.051 4.051 20 O -0.175 6.175 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.021 0.979 30 H 0.031 0.969 31 H -0.014 1.014 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.168 2.912 10.243 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.065 4.065 5 N -0.247 5.247 6 C 0.035 3.965 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.698 3.302 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.191 1.191 15 C -0.005 4.005 16 C -0.032 4.032 17 C -0.226 4.226 18 C -0.235 4.235 19 C -0.119 4.119 20 O -0.070 6.070 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.004 0.996 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.951 3.009 9.825 14.304 hybrid contribution 1.181 0.011 0.987 1.539 sum -8.770 3.021 10.812 14.246 Atomic orbital electron populations 1.21757 0.96278 1.01057 1.01602 1.21496 0.95345 0.97384 1.02014 1.21689 0.95875 0.95919 1.02019 1.22064 0.93750 0.89174 1.01513 1.61954 1.17875 1.15019 1.29820 1.20259 0.82353 0.96271 0.97661 1.21003 0.93450 1.46498 0.93399 0.90067 1.24876 0.98503 0.94897 0.94979 1.69892 1.20036 1.49034 1.15002 0.86920 0.82570 0.78979 0.81730 1.20343 1.21118 1.19059 1.20589 1.01662 0.85126 0.93094 1.22409 0.84446 0.93575 1.02799 1.21417 1.00635 0.92667 1.07876 1.21732 0.95509 0.98336 1.07914 1.23886 0.97359 0.84933 1.05704 1.84052 1.37396 1.17899 1.67672 0.93194 0.93115 0.92743 0.91715 0.92462 0.92801 0.91125 0.88948 0.96080 0.95066 0.99625 0.92717 0.94073 0.88470 0.83907 0.84005 0.78765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.56 5.93 -26.73 -0.16 -1.72 16 3 C -0.12 -1.72 5.19 -26.73 -0.14 -1.85 16 4 C 0.06 1.15 4.81 -3.82 -0.02 1.13 16 5 N -0.52 -10.96 4.37 -237.51 -1.04 -12.00 16 6 C 0.16 4.01 3.62 -4.98 -0.02 3.99 16 7 C -0.51 -14.61 8.94 -34.44 -0.31 -14.92 16 8 H 0.08 2.55 7.92 -52.49 -0.42 2.14 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 11 Si 0.87 22.05 27.39 -169.99 -4.66 17.40 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.27 -6.61 6.66 56.52 0.38 -6.24 16 15 C 0.12 2.17 5.38 -4.98 -0.03 2.14 16 16 C 0.02 0.34 6.23 -35.62 -0.22 0.12 16 17 C -0.21 -3.41 10.81 -39.70 -0.43 -3.84 16 18 C -0.22 -3.25 10.91 -39.70 -0.43 -3.68 16 19 C -0.05 -0.79 12.09 29.42 0.36 -0.43 16 20 O -0.17 -3.33 9.99 5.69 0.06 -3.27 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.71 6.25 -51.93 -0.32 0.39 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.94 7.15 -51.93 -0.37 1.57 16 29 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.03 0.82 6.14 -51.93 -0.32 0.50 16 31 H -0.01 -0.35 7.27 -51.93 -0.38 -0.72 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.04 0.71 8.00 -51.93 -0.42 0.30 16 34 H 0.10 1.42 5.88 -51.93 -0.31 1.11 16 35 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -31.99 303.94 -7.33 -39.32 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.92 Total: -0.51 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.13 Total: -18.35 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.27 Total: -39.16 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: 0.06 Total: -3.27 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.66 Total: 17.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.99 -7.33 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078665810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.686 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds