Wall clock time and date at job start Sun Mar 29 2020 22:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46952 * 2 1 4 4 N 1.46505 * 109.47058 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99902 * 275.52748 * 4 3 2 6 6 H 1.07999 * 120.00062 * 33.67215 * 5 4 3 7 7 C 1.38805 * 119.99941 * 213.66699 * 5 4 3 8 8 N 1.31627 * 120.00042 * 23.33270 * 7 5 4 9 9 Si 1.86801 * 120.00356 * 203.33146 * 7 5 4 10 10 H 1.48496 * 109.46914 * 89.99862 * 9 7 5 11 11 H 1.48498 * 109.47332 * 210.00562 * 9 7 5 12 12 H 1.48503 * 109.46860 * 330.00232 * 9 7 5 13 13 C 1.46498 * 119.99897 * 95.52824 * 4 3 2 14 14 C 1.50703 * 109.47056 * 270.00058 * 13 4 3 15 15 C 1.34515 * 125.78879 * 90.00086 * 14 13 4 16 16 C 1.41383 * 106.83930 * 180.02562 * 15 14 13 17 17 C 1.34512 * 106.84035 * 0.22156 * 16 15 14 18 18 C 1.50707 * 125.79093 * 179.77484 * 17 16 15 19 19 C 1.52990 * 109.47205 * 90.00133 * 18 17 16 20 20 O 1.34299 * 125.78872 * 270.02480 * 14 13 4 21 21 H 1.08995 * 109.47181 * 60.00047 * 1 2 3 22 22 H 1.09005 * 109.46977 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47185 * 300.00073 * 1 2 3 24 24 H 1.09001 * 109.47185 * 239.99927 * 2 1 3 25 25 H 1.09002 * 109.46830 * 119.99867 * 2 1 3 26 26 H 1.09001 * 109.47235 * 59.99957 * 3 2 1 27 27 H 1.08995 * 109.47139 * 299.99978 * 3 2 1 28 28 H 0.97000 * 119.99941 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47150 * 149.99880 * 13 4 3 30 30 H 1.09001 * 109.47051 * 30.00038 * 13 4 3 31 31 H 1.07996 * 126.58342 * 359.97438 * 15 14 13 32 32 H 1.08002 * 126.58017 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.47093 * 210.00706 * 18 17 16 34 34 H 1.09005 * 109.46661 * 330.00116 * 18 17 16 35 35 H 1.09002 * 109.47392 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47563 * 300.00285 * 19 18 17 37 37 H 1.09005 * 109.47325 * 60.00390 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3281 1.1795 6 1 3.7864 0.7293 1.9825 7 6 5.4037 1.9817 1.3436 8 7 5.6859 3.0391 0.6122 9 14 6.6363 1.3609 2.6025 10 1 7.5394 0.3700 1.9640 11 1 7.4366 2.5015 3.1159 12 1 5.9125 0.7175 3.7283 13 6 4.2370 1.5650 -1.2637 14 6 4.4879 0.1927 -1.8339 15 6 3.6737 -0.4709 -2.6742 16 6 4.2937 -1.7109 -2.9514 17 6 5.4474 -1.7329 -2.2600 18 6 6.4438 -2.8634 -2.2439 19 6 7.4663 -2.6580 -3.3632 20 8 5.5621 -0.5752 -1.5890 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 6.5338 3.4960 0.7272 29 1 5.1894 2.0638 -1.0849 30 1 3.6475 2.1497 -1.9700 31 1 2.7275 -0.1236 -3.0620 32 1 3.9122 -2.4924 -3.5918 33 1 6.9566 -2.8820 -1.2822 34 1 5.9231 -3.8088 -2.3963 35 1 8.1868 -3.4759 -3.3518 36 1 6.9536 -2.6394 -4.3248 37 1 7.9870 -1.7126 -3.2108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398267.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:39 Heat of formation + Delta-G solvation = 13.905859 kcal Electronic energy + Delta-G solvation = -17396.041264 eV Core-core repulsion = 14754.160399 eV Total energy + Delta-G solvation = -2641.880865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.70187 -36.25635 -33.80816 -32.94428 -32.08997 -30.80968 -28.72858 -25.66181 -25.44329 -22.96751 -21.63325 -20.84332 -20.19718 -19.30264 -16.89516 -15.82945 -15.23714 -14.89235 -14.32478 -14.18119 -13.89237 -13.65753 -13.15601 -12.65158 -12.63206 -12.24283 -12.04100 -12.00125 -11.54820 -11.32037 -11.20087 -10.97813 -10.79773 -10.71775 -10.62127 -10.42306 -10.04705 -9.98933 -9.78019 -9.04414 -8.52637 -7.45471 -6.71805 -5.85409 -3.38893 2.55793 3.35090 3.40713 3.45208 3.47116 3.77887 4.48070 5.11709 5.24335 5.33026 5.44111 5.49275 5.69025 5.70070 5.77081 5.79647 5.90200 5.93713 6.05972 6.09065 6.25936 6.29027 6.40257 6.47291 6.56458 6.62809 6.65763 6.74794 6.97128 7.00230 7.18761 7.29086 7.52925 7.79134 8.12433 8.44834 9.10191 9.74770 10.28620 11.15650 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.011130 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.954016 B = 2515.189073 C = 3781.225346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 C 0.148 3.852 4 N -0.571 5.571 5 C -0.259 4.259 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.898 3.102 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.277 1.277 13 C 0.199 3.801 14 C 0.028 3.972 15 C -0.248 4.248 16 C -0.210 4.210 17 C -0.046 4.046 18 C -0.038 4.038 19 C -0.147 4.147 20 O -0.163 6.163 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.257 0.743 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 -7.827 -6.338 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.022 3.978 4 N -0.289 5.289 5 C -0.388 4.388 6 H 0.081 0.919 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.727 3.273 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.072 3.928 14 C -0.026 4.026 15 C -0.268 4.268 16 C -0.229 4.229 17 C -0.096 4.096 18 C -0.076 4.076 19 C -0.205 4.205 20 O -0.058 6.058 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.842 -7.585 -6.101 9.907 hybrid contribution 0.393 -0.619 0.435 0.853 sum -1.449 -8.204 -5.665 10.075 Atomic orbital electron populations 1.21717 0.97376 1.00328 1.00934 1.22178 0.93704 1.00915 1.02033 1.20956 0.84573 0.93234 0.99049 1.43794 0.99627 1.83639 1.01862 1.19045 1.03070 1.23942 0.92773 0.91893 1.25055 1.00351 0.94775 0.98447 1.69949 1.23558 1.16737 1.42487 0.86363 0.81626 0.78260 0.81046 1.21077 1.21665 1.20237 1.19801 1.01521 0.85293 0.86217 1.24849 0.84715 0.97074 0.95999 1.21353 1.02520 0.96299 1.06629 1.21326 0.96677 0.99554 1.05355 1.22189 0.98906 0.89168 0.99386 1.19917 0.94418 0.92925 1.00313 1.21771 0.98421 1.02015 0.98243 1.84104 1.41081 1.24065 1.56578 0.93449 0.93885 0.93296 0.92162 0.92662 0.93418 0.94512 0.93312 0.86783 0.92062 0.84889 0.85046 0.90615 0.89857 0.92312 0.92493 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.15 -2.81 6.23 -26.73 -0.17 -2.98 16 3 C 0.15 3.12 5.72 -4.04 -0.02 3.10 16 4 N -0.57 -14.23 2.45 -174.61 -0.43 -14.65 16 5 C -0.26 -7.13 9.48 -15.06 -0.14 -7.27 16 6 H 0.06 1.75 7.93 -52.49 -0.42 1.33 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.88 -25.20 11.32 55.49 0.63 -24.57 16 9 Si 0.90 21.99 29.61 -169.99 -5.03 16.96 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.20 4.77 5.86 -5.19 -0.03 4.74 16 14 C 0.03 0.63 6.86 -35.62 -0.24 0.39 16 15 C -0.25 -4.90 9.20 -39.70 -0.37 -5.26 16 16 C -0.21 -3.82 10.81 -39.70 -0.43 -4.25 16 17 C -0.05 -0.87 6.58 -35.62 -0.23 -1.11 16 18 C -0.04 -0.56 6.47 -27.88 -0.18 -0.74 16 19 C -0.15 -1.83 9.89 37.15 0.37 -1.46 16 20 O -0.16 -3.79 10.65 5.71 0.06 -3.73 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.18 6.39 -51.93 -0.33 0.85 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 27 H 0.04 0.72 7.83 -51.93 -0.41 0.31 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.11 3.08 5.31 -51.93 -0.28 2.81 16 30 H 0.06 1.34 7.86 -51.93 -0.41 0.93 16 31 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -29.42 308.41 -7.33 -36.76 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.04 Total: 0.97 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -1.17 Total: -16.37 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.20 Total: -39.23 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: 0.06 Total: -3.73 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.42 -7.33 -36.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398267.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.664 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds