Wall clock time and date at job start Sun Mar 29 2020 22:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21281 * 119.99806 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00091 * 180.02562 * 14 13 3 17 17 C 1.53003 * 109.47002 * 179.97438 * 16 14 13 18 18 H 1.09002 * 110.33956 * 305.69751 * 17 16 14 19 19 C 1.51096 * 110.38958 * 67.98598 * 17 16 14 20 20 C 1.30525 * 111.10586 * 135.24918 * 19 17 16 21 21 C 1.51097 * 111.10209 * 359.97438 * 20 19 17 22 22 C 1.54635 * 110.38594 * 183.41218 * 17 16 14 23 23 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 24 24 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 27 27 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 30 30 H 1.09001 * 109.46940 * 299.99009 * 16 14 13 31 31 H 1.08999 * 109.47582 * 59.99209 * 16 14 13 32 32 H 1.08004 * 124.44643 * 315.22817 * 19 17 16 33 33 H 1.08001 * 124.44256 * 179.97438 * 20 19 17 34 34 H 1.09005 * 110.38615 * 102.37707 * 21 20 19 35 35 H 1.09000 * 110.38760 * 224.63652 * 21 20 19 36 36 H 1.09003 * 111.03597 * 334.58385 * 22 17 16 37 37 H 1.09002 * 111.03635 * 98.52307 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3393 2.6326 0.4342 16 6 0.0368 3.3386 2.6546 17 6 -1.3821 3.8953 2.5209 18 1 -1.4537 4.5446 1.6484 19 6 -2.3828 2.7676 2.4214 20 6 -3.4183 2.9894 3.1845 21 6 -3.2805 4.3017 3.9205 22 6 -1.7809 4.6664 3.8006 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8295 -0.0694 -2.9455 29 1 2.2720 2.1230 1.9978 30 1 0.0681 2.6145 3.4687 31 1 0.7282 4.1541 2.8668 32 1 -2.2578 1.8930 1.8002 33 1 -4.2626 2.3224 3.2774 34 1 -3.8944 5.0685 3.4479 35 1 -3.5627 4.1819 4.9665 36 1 -1.2213 4.3072 4.6643 37 1 -1.6466 5.7400 3.6683 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183848033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:41 Heat of formation + Delta-G solvation = -57.499825 kcal Electronic energy + Delta-G solvation = -17109.873076 eV Core-core repulsion = 14464.895828 eV Total energy + Delta-G solvation = -2644.977248 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90110 -39.17586 -36.83356 -34.25804 -33.12646 -31.93156 -29.74837 -28.96783 -26.32504 -24.80247 -22.12762 -21.25917 -21.00517 -19.63719 -18.73774 -17.40401 -17.21498 -16.68253 -16.35166 -15.99580 -15.67849 -14.68977 -14.59614 -14.22282 -13.61126 -13.24021 -13.18524 -12.95119 -12.78705 -12.69164 -12.67750 -12.62044 -12.17310 -12.11536 -12.00709 -11.85185 -11.61079 -11.57537 -11.02588 -10.58742 -10.39704 -9.74076 -9.54588 -8.15760 -6.33085 1.43629 1.43887 1.44827 1.56640 1.99503 2.37864 2.77079 3.13677 3.76337 3.79740 4.06500 4.19521 4.42905 4.48446 4.56994 4.62457 4.63698 4.72838 4.77814 4.82927 5.01472 5.03629 5.08536 5.17074 5.26382 5.35951 5.44727 5.47938 5.57295 5.67877 5.74914 5.81340 5.97100 6.04651 6.19133 6.76680 7.09878 7.35218 7.70801 8.89745 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048660 B = 0.005404 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.288036 B = 5179.798950 C = 5562.847023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.711 5.711 14 C 0.493 3.507 15 O -0.586 6.586 16 C -0.122 4.122 17 C -0.054 4.054 18 H 0.063 0.937 19 C -0.166 4.166 20 C -0.175 4.175 21 C -0.096 4.096 22 C -0.114 4.114 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.264 0.736 29 H 0.402 0.598 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.433 6.119 14.169 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.360 5.360 14 C 0.281 3.719 15 O -0.468 6.468 16 C -0.162 4.162 17 C -0.073 4.073 18 H 0.082 0.918 19 C -0.184 4.184 20 C -0.193 4.193 21 C -0.133 4.133 22 C -0.151 4.151 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.237 0.763 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.148 0.852 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.947 6.010 13.339 16.649 hybrid contribution 1.119 -0.446 -0.705 1.396 sum -6.828 5.564 12.634 15.401 Atomic orbital electron populations 1.21666 0.97011 0.98914 1.00294 1.21774 0.93730 0.99370 1.01087 1.18308 0.93504 0.89067 0.81755 0.98753 1.21646 0.91579 1.38545 1.06733 0.91070 1.25790 1.03338 0.94413 0.95053 1.70067 1.36990 1.38460 1.10001 0.85323 0.79139 0.77804 0.78209 1.18372 1.20493 1.21048 1.46319 1.15963 1.56439 1.17323 1.21389 0.81399 0.78451 0.90710 1.90645 1.52279 1.61096 1.42740 1.21746 0.98254 1.01791 0.94404 1.20802 0.92196 0.95232 0.99039 0.91838 1.23261 0.97301 0.98773 0.99107 1.23514 0.98383 0.98730 0.98684 1.21400 0.96633 0.94457 1.00831 1.22595 0.95906 1.00412 0.96174 0.93461 0.95780 0.93874 0.91241 0.94203 0.92684 0.76327 0.87368 0.86841 0.88754 0.85216 0.90388 0.89410 0.89376 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.52 71.98 0.61 -4.99 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.89 16 3 C 0.28 14.39 2.24 44.25 0.10 14.49 16 4 H -0.01 -0.34 7.58 -2.38 -0.02 -0.35 16 5 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.75 5.29 84.66 0.45 1.20 16 8 N -0.92 -53.11 11.28 21.45 0.24 -52.86 16 9 Si 0.97 42.32 29.54 68.60 2.03 44.34 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.71 -29.23 5.02 -446.10 -2.24 -31.47 16 14 C 0.49 19.05 6.18 87.66 0.54 19.59 16 15 O -0.59 -27.59 11.93 -3.03 -0.04 -27.63 16 16 C -0.12 -3.21 5.10 29.85 0.15 -3.06 16 17 C -0.05 -1.41 2.52 -10.86 -0.03 -1.44 16 18 H 0.06 1.96 7.96 -2.39 -0.02 1.94 16 19 C -0.17 -4.80 9.23 26.26 0.24 -4.55 16 20 C -0.18 -3.99 10.78 26.26 0.28 -3.71 16 21 C -0.10 -1.67 6.81 30.59 0.21 -1.47 16 22 C -0.11 -2.01 6.72 31.76 0.21 -1.80 16 23 H 0.05 2.08 5.65 -2.38 -0.01 2.07 16 24 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 25 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 3.91 5.94 -2.38 -0.01 3.90 16 27 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 29 H 0.40 13.92 8.54 -92.71 -0.79 13.12 16 30 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.09 3.30 7.44 -2.91 -0.02 3.28 16 33 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 34 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.29 7.91 -2.39 -0.02 1.28 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -66.25 296.62 3.41 -62.84 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.25 Total: 25.33 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 3.16 Total: -20.55 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.00 Total: -84.33 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -66.25 3.41 -62.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183848033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.343 kcal (2) G-P(sol) polarization free energy of solvation -66.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds