Wall clock time and date at job start Sun Mar 29 2020 22:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21613 * 120.00196 * 359.97438 * 14 13 3 16 16 C 1.47105 * 120.00277 * 179.97438 * 14 13 3 17 17 C 1.31549 * 118.10749 * 179.73288 * 16 14 13 18 18 C 1.50086 * 123.79754 * 180.14766 * 17 16 14 19 19 C 1.53017 * 110.19030 * 343.32190 * 18 17 16 20 20 C 1.53358 * 108.50852 * 49.54069 * 19 18 17 21 21 C 1.50095 * 118.10155 * 0.02562 * 16 14 13 22 22 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 23 23 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 24 24 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 26 26 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 27 27 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 28 28 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 29 29 H 1.07999 * 118.09987 * 0.42966 * 17 16 14 30 30 H 1.09000 * 109.50316 * 222.99379 * 18 17 16 31 31 H 1.09004 * 109.05461 * 103.36465 * 18 17 16 32 32 H 1.08999 * 109.62472 * 289.83122 * 19 18 17 33 33 H 1.08996 * 109.79048 * 169.34318 * 19 18 17 34 34 H 1.09002 * 109.63235 * 172.26014 * 20 19 18 35 35 H 1.09002 * 109.63541 * 51.67034 * 20 19 18 36 36 H 1.08997 * 109.36189 * 283.03283 * 21 16 14 37 37 H 1.08999 * 109.36222 * 42.76498 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3366 2.6299 -0.4649 16 6 0.0772 3.3115 -2.6549 17 6 -1.1208 3.8475 -2.7447 18 6 -1.6352 4.5410 -3.9723 19 6 -0.4746 4.8938 -4.9051 20 6 0.3927 3.6437 -5.0973 21 6 1.0819 3.3216 -3.7699 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8117 0.4042 0.4383 28 1 2.2954 2.1150 -1.9977 29 1 -1.7701 3.7890 -1.8837 30 1 -2.1566 5.4535 -3.6833 31 1 -2.3275 3.8783 -4.4917 32 1 0.1232 5.6896 -4.4608 33 1 -0.8627 5.2220 -5.8693 34 1 1.1443 3.8337 -5.8636 35 1 -0.2353 2.8046 -5.3964 36 1 1.8415 4.0760 -3.5650 37 1 1.5550 2.3420 -3.8389 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276007426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:26 Heat of formation + Delta-G solvation = -70.301053 kcal Electronic energy + Delta-G solvation = -17294.680193 eV Core-core repulsion = 14649.147842 eV Total energy + Delta-G solvation = -2645.532351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15562 -38.76125 -37.01726 -34.54062 -33.45325 -31.91298 -31.50051 -29.07912 -24.94092 -24.38797 -23.66416 -22.13297 -21.27185 -20.09711 -18.68175 -18.10425 -17.24231 -16.45805 -15.79323 -15.44864 -15.28024 -14.81106 -14.63453 -14.50850 -14.22867 -14.06386 -13.81183 -13.63480 -13.15126 -13.12909 -12.68162 -12.52044 -12.32388 -11.81454 -11.71809 -11.64560 -11.58032 -11.28921 -11.24531 -10.64964 -10.43270 -10.02673 -9.75173 -8.83862 -6.42725 0.51918 1.44434 1.46500 1.68407 2.38693 2.40154 2.54953 2.90813 3.71474 3.78568 4.05514 4.21767 4.27580 4.29353 4.36757 4.42151 4.54176 4.65182 4.67451 4.82532 4.91012 4.97731 5.03707 5.04681 5.16596 5.18560 5.26932 5.28053 5.47249 5.50887 5.52705 5.63196 5.68237 5.82638 6.00859 6.52381 6.86943 7.24881 7.44331 8.52961 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.006516 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.204509 B = 4296.072861 C = 4615.369985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.253 3.747 4 H 0.018 0.982 5 C -0.628 4.628 6 H 0.041 0.959 7 C 0.009 3.991 8 N -0.913 5.913 9 Si 1.062 2.938 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.256 1.256 13 N -0.699 5.699 14 C 0.529 3.471 15 O -0.591 6.591 16 C -0.188 4.188 17 C -0.070 4.070 18 C -0.091 4.091 19 C -0.120 4.120 20 C -0.113 4.113 21 C -0.084 4.084 22 H 0.038 0.962 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.262 0.738 28 H 0.401 0.599 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 6.286 -13.409 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.148 3.852 4 H 0.036 0.964 5 C -0.665 4.665 6 H 0.059 0.941 7 C -0.194 4.194 8 N -0.546 5.546 9 Si 0.885 3.115 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.181 1.181 13 N -0.347 5.347 14 C 0.319 3.681 15 O -0.475 6.475 16 C -0.191 4.191 17 C -0.090 4.090 18 C -0.127 4.127 19 C -0.158 4.158 20 C -0.151 4.151 21 C -0.121 4.121 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.236 0.764 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.645 5.948 -11.131 17.865 hybrid contribution 0.803 0.129 -1.538 1.740 sum -11.842 6.077 -12.669 18.376 Atomic orbital electron populations 1.21758 0.95643 1.00290 1.01258 1.22111 0.95196 0.98360 1.00938 1.18734 0.93625 0.89550 0.83296 0.96376 1.22132 0.91324 1.48952 1.04085 0.94073 1.26643 0.96733 0.91192 1.04877 1.70963 1.14942 1.38698 1.30038 0.83778 0.75837 0.78223 0.73686 1.20290 1.20148 1.18100 1.46086 1.15476 1.56002 1.17146 1.19241 0.81659 0.78316 0.88922 1.90692 1.51731 1.62054 1.42977 1.20889 0.98672 1.04846 0.94643 1.23066 0.94377 0.91961 0.99582 1.20665 0.98804 1.00720 0.92527 1.21648 0.96433 0.97486 1.00201 1.21584 0.99551 0.98637 0.95307 1.20419 0.96327 1.02245 0.93102 0.94292 0.93478 0.92417 0.92861 0.92977 0.92872 0.76371 0.87837 0.88681 0.88380 0.92062 0.89037 0.89775 0.91303 0.90634 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.53 71.98 0.61 -4.81 16 2 C -0.13 -5.81 5.37 30.60 0.16 -5.65 16 3 C 0.25 12.50 1.84 44.25 0.08 12.58 16 4 H 0.02 0.99 6.12 -2.39 -0.01 0.98 16 5 C -0.63 -34.92 8.92 25.60 0.23 -34.69 16 6 H 0.04 2.41 7.96 -2.91 -0.02 2.39 16 7 C 0.01 0.50 5.15 84.66 0.44 0.94 16 8 N -0.91 -55.10 13.70 21.45 0.29 -54.80 16 9 Si 1.06 51.33 26.56 68.60 1.82 53.16 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.26 -11.60 6.34 99.48 0.63 -10.97 16 13 N -0.70 -29.58 4.96 -449.72 -2.23 -31.81 16 14 C 0.53 21.20 6.32 86.57 0.55 21.75 16 15 O -0.59 -27.32 13.09 -4.07 -0.05 -27.38 16 16 C -0.19 -5.63 5.79 -18.29 -0.11 -5.73 16 17 C -0.07 -1.81 9.42 24.93 0.23 -1.57 16 18 C -0.09 -1.48 6.11 29.66 0.18 -1.30 16 19 C -0.12 -1.76 6.00 30.72 0.18 -1.57 16 20 C -0.11 -1.90 6.00 30.71 0.18 -1.71 16 21 C -0.08 -1.98 5.01 29.66 0.15 -1.83 16 22 H 0.04 1.67 7.88 -2.39 -0.02 1.65 16 23 H 0.05 1.94 5.63 -2.39 -0.01 1.92 16 24 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.05 2.47 5.77 -2.39 -0.01 2.46 16 27 H 0.26 15.77 8.73 -92.70 -0.81 14.96 16 28 H 0.40 15.35 6.73 -92.70 -0.62 14.73 16 29 H 0.10 3.06 7.17 -2.91 -0.02 3.04 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.70 7.21 -2.39 -0.02 1.68 16 Total: -1.00 -66.59 289.74 3.05 -63.55 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.31 Total: 20.88 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 2.90 Total: -23.60 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -1.94 Total: -86.61 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 1.82 Total: 53.16 kcal Total: -66.59 3.05 -63.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276007426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.755 kcal (2) G-P(sol) polarization free energy of solvation -66.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds