Wall clock time and date at job start Sun Mar 29 2020 22:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47180 * 2 1 4 4 C 1.50700 * 109.47064 * 120.00351 * 2 1 3 5 5 H 1.08002 * 119.99842 * 119.99798 * 4 2 1 6 6 C 1.37874 * 120.00020 * 299.72067 * 4 2 1 7 7 N 1.31511 * 119.99809 * 0.27826 * 6 4 2 8 8 Si 1.86801 * 120.00338 * 180.27317 * 6 4 2 9 9 H 1.48505 * 109.46884 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47223 * 120.00165 * 8 6 4 11 11 H 1.48492 * 109.47385 * 240.00725 * 8 6 4 12 12 N 1.46500 * 109.47225 * 240.00224 * 2 1 3 13 13 C 1.34781 * 120.00323 * 84.99952 * 12 2 1 14 14 O 1.21283 * 119.99665 * 0.02562 * 13 12 2 15 15 C 1.50691 * 120.00221 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.64291 * 336.35438 * 15 13 12 17 17 C 1.53024 * 109.64207 * 215.93588 * 15 13 12 18 18 C 1.50069 * 110.14652 * 190.87801 * 17 15 13 19 19 C 1.29432 * 124.07659 * 17.13762 * 18 17 15 20 20 C 1.50068 * 124.08000 * 359.54837 * 19 18 17 21 21 C 1.52953 * 110.29716 * 16.94914 * 20 19 18 22 22 H 1.08998 * 109.43854 * 70.51583 * 21 20 19 23 23 C 1.52996 * 109.80126 * 191.12123 * 21 20 19 24 24 H 1.08999 * 109.46674 * 59.99588 * 1 2 3 25 25 H 1.09000 * 109.47176 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46902 * 300.00042 * 1 2 3 27 27 H 0.97004 * 119.99973 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00031 * 265.00240 * 12 2 1 29 29 H 1.08999 * 109.36033 * 311.09067 * 17 15 13 30 30 H 1.09007 * 109.35704 * 70.80899 * 17 15 13 31 31 H 1.08003 * 117.95832 * 197.10960 * 18 17 15 32 32 H 1.08000 * 117.96529 * 179.52707 * 19 18 17 33 33 H 1.08995 * 109.36447 * 137.31744 * 20 19 18 34 34 H 1.09001 * 109.35707 * 257.04602 * 20 19 18 35 35 H 1.08999 * 109.47686 * 185.01843 * 23 21 20 36 36 H 1.09002 * 109.47124 * 305.02309 * 23 21 20 37 37 H 1.09005 * 109.47404 * 65.01943 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.7040 -0.2362 2.4827 7 7 0.9479 0.8331 2.6034 8 14 2.3329 -1.1123 4.0079 9 1 3.1572 -2.2796 3.6037 10 1 3.1607 -0.1765 4.8105 11 1 1.1813 -1.5774 4.8219 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8591 1.1587 -2.4115 15 6 2.6489 -0.7287 -3.5877 16 1 3.2347 -1.5998 -3.2946 17 6 3.5190 0.2226 -4.4121 18 6 3.8063 -0.3752 -5.7582 19 6 3.1367 -1.3553 -6.2743 20 6 1.9856 -2.0373 -5.5947 21 6 1.4590 -1.1730 -4.4479 22 1 0.9544 -0.2972 -4.8558 23 6 0.4819 -1.9838 -3.5943 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7166 1.1666 3.4844 28 1 2.2490 -1.6317 -1.1527 29 1 2.9959 1.1701 -4.5416 30 1 4.4590 0.3976 -3.8886 31 1 4.6223 0.0384 -6.3322 32 1 3.4240 -1.7038 -7.2553 33 1 1.1874 -2.2055 -6.3175 34 1 2.3183 -2.9949 -5.1944 35 1 0.0425 -1.3389 -2.8333 36 1 -0.3074 -2.3866 -4.2291 37 1 1.0143 -2.8038 -3.1123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284177917.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:15 Heat of formation + Delta-G solvation = -67.559513 kcal Electronic energy + Delta-G solvation = -17309.572280 eV Core-core repulsion = 14664.158811 eV Total energy + Delta-G solvation = -2645.413469 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25656 -38.80026 -36.66978 -34.40851 -33.59931 -32.13566 -30.55588 -27.54996 -27.34678 -25.15237 -23.01268 -21.99967 -21.03344 -18.98988 -18.83088 -17.50664 -17.10688 -16.50793 -16.14636 -15.78138 -15.16480 -14.77610 -14.40117 -14.34495 -14.07131 -13.73448 -13.53567 -13.03603 -13.03000 -12.96176 -12.86427 -12.77525 -12.61852 -12.28431 -12.12565 -11.67474 -11.53085 -11.24860 -11.09885 -10.65339 -10.45249 -9.82243 -9.71310 -8.17941 -6.35665 1.43959 1.44797 1.45690 1.57105 1.84759 2.35636 2.65227 3.12462 3.66884 3.77149 3.82613 4.23639 4.24798 4.38491 4.42249 4.57256 4.61512 4.74607 4.82007 4.89215 4.91209 4.99203 5.04967 5.09210 5.16427 5.20692 5.31356 5.42302 5.45216 5.62073 5.69350 5.80691 5.91938 6.09417 6.10349 6.72904 6.99805 7.32463 7.58895 8.88670 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041037 B = 0.005704 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.152433 B = 4907.726003 C = 4951.957178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.270 3.730 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.702 5.702 13 C 0.506 3.494 14 O -0.606 6.606 15 C -0.094 4.094 16 H 0.107 0.893 17 C -0.079 4.079 18 C -0.163 4.163 19 C -0.153 4.153 20 C -0.080 4.080 21 C -0.074 4.074 22 H 0.056 0.944 23 C -0.151 4.151 24 H 0.009 0.991 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.265 0.735 28 H 0.403 0.597 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -9.472 -14.965 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.350 5.350 13 C 0.294 3.706 14 O -0.488 6.488 15 C -0.115 4.115 16 H 0.126 0.874 17 C -0.116 4.116 18 C -0.181 4.181 19 C -0.170 4.170 20 C -0.117 4.117 21 C -0.093 4.093 22 H 0.075 0.925 23 C -0.208 4.208 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.244 -8.540 -14.841 17.427 hybrid contribution 0.177 0.036 1.200 1.213 sum 3.421 -8.504 -13.641 16.435 Atomic orbital electron populations 1.21859 0.98322 0.99380 0.99274 1.18321 0.91115 0.91749 0.82208 0.98837 1.21573 1.32529 1.13402 0.90787 0.90871 1.25824 0.94894 0.95557 1.02404 1.70070 1.37157 1.23979 1.24530 0.85272 0.78095 0.78494 0.78309 1.18301 1.21022 1.20366 1.46343 1.64987 1.14005 1.09651 1.21253 0.77014 0.86830 0.85536 1.90607 1.53560 1.18674 1.85968 1.21453 0.98681 0.99413 0.91962 0.87446 1.20292 0.98898 0.97998 0.94438 1.22032 1.01173 0.98863 0.96001 1.22292 0.96918 0.97321 1.00501 1.20540 0.96911 0.98377 0.95848 1.21058 0.93895 0.98813 0.95573 0.92508 1.21904 0.99513 0.99911 0.99460 0.97225 0.93978 0.91703 0.92578 0.76182 0.91976 0.91229 0.86244 0.85421 0.88964 0.88956 0.95228 0.90422 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 2 C 0.27 14.30 2.56 44.24 0.11 14.41 16 3 H -0.01 -0.40 7.58 -2.39 -0.02 -0.41 16 4 C -0.54 -29.16 8.72 25.60 0.22 -28.94 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.71 5.31 84.65 0.45 1.16 16 7 N -0.92 -53.43 11.33 21.45 0.24 -53.19 16 8 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 9 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 12 N -0.70 -29.73 4.72 -446.10 -2.11 -31.83 16 13 C 0.51 20.81 5.50 87.65 0.48 21.30 16 14 O -0.61 -30.97 15.75 -3.04 -0.05 -31.02 16 15 C -0.09 -2.74 2.19 -11.40 -0.02 -2.77 16 16 H 0.11 2.65 8.09 -2.39 -0.02 2.63 16 17 C -0.08 -2.22 5.30 29.66 0.16 -2.06 16 18 C -0.16 -3.42 9.80 27.05 0.27 -3.15 16 19 C -0.15 -2.69 9.81 27.05 0.27 -2.42 16 20 C -0.08 -1.39 5.44 29.63 0.16 -1.23 16 21 C -0.07 -1.85 2.38 -10.68 -0.03 -1.88 16 22 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 23 C -0.15 -3.72 8.58 71.98 0.62 -3.10 16 24 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 3.67 6.08 -2.38 -0.01 3.66 16 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.40 14.40 8.51 -92.71 -0.79 13.61 16 29 H 0.06 2.07 7.47 -2.39 -0.02 2.05 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.03 0.94 7.16 -2.39 -0.02 0.92 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -67.62 299.63 3.72 -63.91 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.25 Total: 22.57 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 3.35 Total: -14.72 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.86 Total: -85.02 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.05 Total: -31.02 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -67.62 3.72 -63.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284177917.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.651 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds