Wall clock time and date at job start Sun Mar 29 2020 21:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 C 1.52999 * 109.46738 * 240.00509 * 2 1 3 5 5 N 1.46501 * 109.47556 * 59.99706 * 4 2 1 6 6 C 1.34768 * 120.00091 * 179.97438 * 5 4 2 7 7 O 1.21689 * 120.00161 * 0.02562 * 6 5 4 8 8 C 1.46381 * 119.99752 * 179.97438 * 6 5 4 9 9 H 1.07996 * 119.99976 * 0.02562 * 8 6 5 10 10 C 1.40054 * 119.99839 * 180.02562 * 8 6 5 11 11 N 1.30673 * 119.99730 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99900 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47089 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47101 * 120.00243 * 12 10 8 15 15 H 1.48500 * 109.46878 * 240.00138 * 12 10 8 16 16 C 1.50700 * 109.47082 * 120.00658 * 2 1 3 17 17 C 1.30525 * 124.44876 * 120.02679 * 16 2 1 18 18 C 1.51101 * 111.10317 * 180.22138 * 17 16 2 19 19 C 1.54803 * 104.64610 * 343.19479 * 18 17 16 20 20 C 1.51099 * 124.44617 * 299.99357 * 16 2 1 21 21 H 1.09004 * 109.46819 * 299.99802 * 1 2 3 22 22 H 1.09002 * 109.47177 * 59.99540 * 1 2 3 23 23 H 1.08999 * 109.47157 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46983 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47684 * 300.00753 * 3 2 1 26 26 H 1.09004 * 109.46629 * 60.00076 * 3 2 1 27 27 H 1.08995 * 109.46928 * 180.02562 * 4 2 1 28 28 H 1.09003 * 109.47319 * 299.99630 * 4 2 1 29 29 H 0.97003 * 119.99738 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99544 * 179.97438 * 11 10 8 31 31 H 1.08002 * 124.44516 * 359.94607 * 17 16 2 32 32 H 1.08996 * 110.39014 * 102.12741 * 18 17 16 33 33 H 1.08993 * 110.38575 * 224.50514 * 18 17 16 34 34 H 1.09005 * 111.24700 * 266.87567 * 19 18 17 35 35 H 1.08994 * 110.89817 * 142.88949 * 19 18 17 36 36 H 1.08999 * 110.39225 * 315.27634 * 20 16 2 37 37 H 1.09008 * 110.38334 * 77.65200 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.5516 -0.0305 -2.4455 6 6 1.8775 -0.4906 -3.6695 7 8 2.5771 -1.4800 -3.7813 8 6 1.3890 0.1992 -4.8646 9 1 0.7678 1.0770 -4.7655 10 6 1.7273 -0.2793 -6.1367 11 7 2.4786 -1.3417 -6.2566 12 14 1.1045 0.6014 -7.6618 13 1 0.2790 1.7677 -7.2575 14 1 2.2594 1.0680 -8.4702 15 1 0.2795 -0.3320 -8.4701 16 6 2.0324 -0.7105 1.2304 17 6 2.7863 -1.7759 1.2117 18 6 3.1074 -2.2398 2.6134 19 6 2.7739 -1.0254 3.5137 20 6 1.7300 -0.2828 2.6477 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1299 -0.7216 -1.2491 28 1 1.6767 -1.7488 -1.2494 29 1 0.9942 0.7584 -2.3564 30 1 2.7125 -1.6733 -7.1377 31 1 3.1313 -2.2644 0.3124 32 1 2.4880 -3.0957 2.8813 33 1 4.1640 -2.4939 2.6966 34 1 3.6544 -0.4054 3.6826 35 1 2.3387 -1.3500 4.4588 36 1 1.8480 0.7957 2.7523 37 1 0.7206 -0.5842 2.9280 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312286504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:01 Heat of formation + Delta-G solvation = -66.447982 kcal Electronic energy + Delta-G solvation = -16985.075133 eV Core-core repulsion = 14339.709864 eV Total energy + Delta-G solvation = -2645.365269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65254 -39.15669 -36.92560 -34.68435 -33.43803 -29.99445 -28.98129 -28.42240 -28.13886 -26.48218 -22.47715 -21.38900 -21.19287 -19.55027 -18.14531 -17.57272 -16.66384 -16.40362 -16.04315 -15.77321 -15.56973 -14.73185 -14.32321 -14.19426 -13.87797 -13.66237 -13.18318 -13.11485 -12.89459 -12.81704 -12.63024 -12.61964 -12.48613 -12.11320 -11.98980 -11.90582 -11.79246 -11.58925 -11.41785 -10.95689 -9.88947 -9.56225 -9.47921 -8.30074 -6.86716 1.31325 1.39821 1.40218 1.58488 2.24424 2.46504 3.09425 3.60085 3.60509 3.68790 4.01541 4.03336 4.14375 4.25292 4.32157 4.57261 4.71906 4.72059 4.85196 4.86720 4.91303 4.96560 4.99278 5.03960 5.08587 5.11236 5.26014 5.28961 5.31148 5.40097 5.45357 5.75578 5.86682 6.02371 6.23227 6.26566 6.85748 7.54960 8.48679 8.66991 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.049656 B = 0.005142 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.741769 B = 5444.055351 C = 5793.540406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.021 4.021 3 C -0.131 4.131 4 C 0.152 3.848 5 N -0.748 5.748 6 C 0.534 3.466 7 O -0.636 6.636 8 C -0.572 4.572 9 H 0.089 0.911 10 C 0.027 3.973 11 N -0.824 5.824 12 Si 1.001 2.999 13 H -0.245 1.245 14 H -0.269 1.269 15 H -0.269 1.269 16 C -0.119 4.119 17 C -0.198 4.198 18 C -0.095 4.095 19 C -0.118 4.118 20 C -0.085 4.085 21 H 0.085 0.915 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 5.809 16.955 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.022 4.022 3 C -0.188 4.188 4 C 0.027 3.973 5 N -0.404 5.404 6 C 0.339 3.661 7 O -0.524 6.524 8 C -0.609 4.609 9 H 0.107 0.893 10 C -0.188 4.188 11 N -0.454 5.454 12 Si 0.820 3.180 13 H -0.168 1.168 14 H -0.193 1.193 15 H -0.194 1.194 16 C -0.120 4.120 17 C -0.216 4.216 18 C -0.132 4.132 19 C -0.155 4.155 20 C -0.122 4.122 21 H 0.103 0.897 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.230 0.770 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.395 4.971 16.815 17.860 hybrid contribution -0.014 -0.027 -1.123 1.124 sum -3.409 4.945 15.692 16.802 Atomic orbital electron populations 1.21773 0.92397 1.01761 1.02833 1.19484 0.96818 0.95783 0.90079 1.21777 1.00560 0.93607 1.02831 1.20909 0.96317 0.94674 0.85391 1.45805 1.56960 1.33009 1.04580 1.18694 0.79954 0.83836 0.83651 1.90546 1.44005 1.30638 1.87234 1.21465 1.34583 1.14571 0.90269 0.89292 1.27028 0.92898 0.94657 1.04209 1.70215 1.28785 1.20924 1.25457 0.84932 0.78673 0.78832 0.75582 1.16777 1.19343 1.19352 1.21986 0.97920 0.96484 0.95573 1.23337 1.01085 0.98513 0.98679 1.21355 1.01665 0.99066 0.91110 1.22486 0.99011 0.95917 0.98115 1.21284 1.00111 1.01273 0.89491 0.89662 0.92487 0.93726 0.93737 0.92485 0.89620 0.95986 0.95975 0.77012 0.91605 0.88698 0.90297 0.91153 0.90752 0.89036 0.89889 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.20 71.98 0.59 -2.80 16 2 C -0.02 -0.63 0.71 -52.93 -0.04 -0.67 16 3 C -0.13 -3.39 8.17 71.98 0.59 -2.81 16 4 C 0.15 6.40 3.37 86.38 0.29 6.69 16 5 N -0.75 -35.11 4.95 -467.41 -2.32 -37.43 16 6 C 0.53 32.28 7.75 86.36 0.67 32.95 16 7 O -0.64 -44.66 15.02 -4.31 -0.06 -44.72 16 8 C -0.57 -33.21 9.54 24.83 0.24 -32.97 16 9 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 10 C 0.03 1.53 5.50 85.31 0.47 1.99 16 11 N -0.82 -51.81 11.83 21.84 0.26 -51.55 16 12 Si 1.00 41.56 29.56 68.60 2.03 43.59 16 13 H -0.24 -9.32 7.11 99.48 0.71 -8.61 16 14 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 15 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 16 C -0.12 -3.15 4.77 -15.87 -0.08 -3.23 16 17 C -0.20 -5.72 9.71 26.26 0.26 -5.47 16 18 C -0.09 -2.02 6.82 30.59 0.21 -1.81 16 19 C -0.12 -1.96 7.20 31.77 0.23 -1.73 16 20 C -0.08 -1.58 6.39 30.53 0.20 -1.38 16 21 H 0.08 1.67 8.01 -2.39 -0.02 1.65 16 22 H 0.06 1.53 6.86 -2.39 -0.02 1.52 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.54 6.86 -2.39 -0.02 1.52 16 26 H 0.08 1.67 7.42 -2.39 -0.02 1.65 16 27 H 0.02 1.02 7.78 -2.39 -0.02 1.01 16 28 H 0.02 1.03 7.78 -2.39 -0.02 1.01 16 29 H 0.39 15.85 6.14 -92.71 -0.57 15.28 16 30 H 0.27 15.52 8.29 -92.71 -0.77 14.76 16 31 H 0.09 3.31 6.77 -2.91 -0.02 3.29 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.33 7.39 -2.39 -0.02 1.32 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -77.40 298.96 4.01 -73.39 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.48 Total: 27.95 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 3.62 Total: -11.23 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -2.06 Total: -88.98 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.06 Total: -44.72 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -77.40 4.01 -73.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312286504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.945 kcal (2) G-P(sol) polarization free energy of solvation -77.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds