Wall clock time and date at job start Sun Mar 29 2020 22:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.63465 * 2 1 4 4 C 1.53012 * 109.79154 * 239.50399 * 2 1 3 5 5 C 1.50096 * 110.13393 * 190.45112 * 4 2 1 6 6 C 1.31552 * 123.79451 * 17.16939 * 5 4 2 7 7 C 1.47097 * 118.11058 * 179.85815 * 6 5 4 8 8 O 1.21606 * 120.00085 * 99.99164 * 7 6 5 9 9 N 1.34776 * 119.99860 * 280.00358 * 7 6 5 10 10 C 1.46500 * 120.00136 * 4.73094 * 9 7 6 11 11 C 1.46502 * 120.00056 * 184.73879 * 9 7 6 12 12 C 1.50702 * 109.47273 * 89.99454 * 11 9 7 13 13 H 1.07997 * 120.00199 * 0.02562 * 12 11 9 14 14 C 1.37881 * 119.99739 * 180.02562 * 12 11 9 15 15 N 1.31510 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99593 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47163 * 90.00215 * 16 14 12 18 18 H 1.48506 * 109.47226 * 209.99843 * 16 14 12 19 19 H 1.48500 * 109.47457 * 330.00063 * 16 14 12 20 20 C 1.50096 * 123.78603 * 359.58177 * 6 5 4 21 21 C 1.53003 * 110.13722 * 17.16321 * 20 6 5 22 22 H 1.09002 * 109.47390 * 299.61177 * 1 2 3 23 23 H 1.09009 * 109.46982 * 59.60377 * 1 2 3 24 24 H 1.08997 * 109.47383 * 179.60566 * 1 2 3 25 25 H 1.09001 * 109.36279 * 310.65398 * 4 2 1 26 26 H 1.09000 * 109.35813 * 70.38566 * 4 2 1 27 27 H 1.08002 * 118.10678 * 197.19210 * 5 4 2 28 28 H 1.09000 * 109.47143 * 94.38811 * 10 9 7 29 29 H 1.09004 * 109.47447 * 214.38226 * 10 9 7 30 30 H 1.08997 * 109.47536 * 334.38439 * 10 9 7 31 31 H 1.08997 * 109.47067 * 209.99820 * 11 9 7 32 32 H 1.09000 * 109.46850 * 329.99186 * 11 9 7 33 33 H 0.97004 * 119.99967 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.36223 * 137.37006 * 20 6 5 35 35 H 1.09001 * 109.36234 * 256.96125 * 20 6 5 36 36 H 1.09001 * 109.63002 * 69.96230 * 21 20 6 37 37 H 1.09007 * 109.63165 * 190.54388 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0480 -0.7306 -1.2406 5 6 3.5270 -0.9595 -1.1254 6 6 4.1935 -0.8817 0.0061 7 6 5.6425 -1.1332 -0.0243 8 8 6.4217 -0.1997 -0.0271 9 7 6.1064 -2.3984 -0.0495 10 6 5.1697 -3.5202 -0.1511 11 6 7.5474 -2.6518 0.0250 12 6 7.9580 -2.7973 1.4677 13 1 7.2194 -2.7103 2.2508 14 6 9.2767 -3.0417 1.7879 15 7 10.1760 -3.1482 0.8343 16 14 9.7856 -3.2214 3.5762 17 1 9.6824 -4.6470 3.9794 18 1 11.1879 -2.7609 3.7405 19 1 8.8913 -2.3994 4.4304 20 6 3.5619 -0.5453 1.3255 21 6 2.0452 -0.7308 1.2459 22 1 -0.3634 0.5078 0.8934 23 1 -0.3633 0.5200 -0.8865 24 1 -0.3634 -1.0276 -0.0071 25 1 1.5400 -1.6906 -1.3331 26 1 1.8456 -0.1278 -2.1258 27 1 4.0758 -1.2017 -2.0235 28 1 5.0579 -3.8065 -1.1969 29 1 5.5535 -4.3668 0.4182 30 1 4.2009 -3.2222 0.2496 31 1 7.7834 -3.5691 -0.5142 32 1 8.0867 -1.8176 -0.4238 33 1 11.1038 -3.3198 1.0596 34 1 3.9661 -1.2005 2.0972 35 1 3.7863 0.4906 1.5799 36 1 1.8095 -1.7924 1.1715 37 1 1.5776 -0.3106 2.1365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334570293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:19 Heat of formation + Delta-G solvation = -42.119418 kcal Electronic energy + Delta-G solvation = -17085.138740 eV Core-core repulsion = 14440.828436 eV Total energy + Delta-G solvation = -2644.310304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.61773 -37.76665 -34.71867 -32.98542 -32.27474 -30.77660 -28.05844 -26.88999 -25.54235 -23.18669 -23.02838 -21.21861 -19.38883 -17.51059 -16.52480 -16.41445 -15.47731 -14.62461 -14.53037 -14.39345 -14.09375 -13.61557 -13.35209 -12.85861 -12.54652 -12.37042 -12.24627 -12.09232 -11.89812 -11.76097 -11.57901 -11.19346 -10.90148 -10.78975 -10.59301 -10.57206 -10.26757 -10.14601 -9.61566 -8.95064 -8.62487 -8.42081 -7.61322 -6.03257 -4.08218 2.15412 3.30611 3.36479 3.38970 3.45336 4.07154 4.45432 4.65232 4.72545 4.77124 5.20610 5.24793 5.31826 5.34686 5.43525 5.48767 5.59090 5.64465 5.75771 5.77516 5.90329 5.94049 6.00130 6.04490 6.09596 6.10751 6.27102 6.36678 6.61480 6.95676 7.09232 7.46741 7.56410 7.93357 8.24601 8.43915 8.90637 9.10308 9.56838 11.04895 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041070 B = 0.005664 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.597505 B = 4942.362766 C = 5188.913877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.079 4.079 5 C -0.136 4.136 6 C -0.131 4.131 7 C 0.539 3.461 8 O -0.542 6.542 9 N -0.597 5.597 10 C 0.086 3.914 11 C 0.243 3.757 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.075 4.075 21 C -0.111 4.111 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.707 1.691 -2.171 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.092 0.908 4 C -0.116 4.116 5 C -0.155 4.155 6 C -0.134 4.134 7 C 0.325 3.675 8 O -0.420 6.420 9 N -0.328 5.328 10 C -0.058 4.058 11 C 0.124 3.876 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.113 4.113 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.056 2.121 -2.210 18.314 hybrid contribution 0.512 -0.252 0.917 1.080 sum -17.544 1.869 -1.293 17.691 Atomic orbital electron populations 1.21817 0.95147 1.01731 1.01561 1.21223 0.95212 0.99973 0.95050 0.90848 1.20479 0.92462 1.00580 0.98071 1.22392 0.95800 1.00373 0.96917 1.20955 0.93883 1.02067 0.96503 1.18558 0.88018 0.83550 0.77355 1.90767 1.58059 1.42843 1.50346 1.48165 1.09754 1.04494 1.70413 1.21615 0.93112 0.90713 1.00386 1.19310 0.73476 0.97479 0.97356 1.21432 0.93723 1.49114 0.92282 0.92465 1.24941 0.96290 0.95197 0.97687 1.69937 1.02277 1.49112 1.32040 0.86489 0.77906 0.78178 0.84804 1.20612 1.21052 1.19886 1.20281 0.94483 1.02516 0.93972 1.21655 0.94789 1.00756 0.97618 0.92696 0.92783 0.92676 0.90571 0.91027 0.87598 0.93847 0.91094 0.92100 0.94962 0.93751 0.92704 0.90530 0.90276 0.91598 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.20 37.15 0.34 -0.79 16 2 C -0.10 -0.95 2.76 -90.43 -0.25 -1.20 16 3 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 4 C -0.08 -0.82 5.43 -28.17 -0.15 -0.97 16 5 C -0.14 -1.90 9.03 -36.45 -0.33 -2.23 16 6 C -0.13 -2.19 3.76 -103.17 -0.39 -2.57 16 7 C 0.54 12.04 6.81 -12.67 -0.09 11.95 16 8 O -0.54 -14.68 16.66 5.27 0.09 -14.59 16 9 N -0.60 -13.35 2.86 -184.36 -0.53 -13.88 16 10 C 0.09 1.46 10.13 59.85 0.61 2.06 16 11 C 0.24 6.58 5.22 -5.19 -0.03 6.56 16 12 C -0.53 -15.26 9.39 -34.44 -0.32 -15.58 16 13 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 16 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.08 -1.08 5.79 -28.17 -0.16 -1.24 16 21 C -0.11 -1.19 5.29 -26.54 -0.14 -1.33 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.70 8.11 -51.93 -0.42 0.27 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.11 1.53 7.95 -52.49 -0.42 1.11 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 30 H 0.06 0.89 6.55 -51.93 -0.34 0.55 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.04 1.35 7.36 -51.93 -0.38 0.97 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -33.30 305.56 -7.30 -40.60 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -6.17 Total: -3.86 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.01 Total: -3.68 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.21 Total: -40.14 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.30 -7.30 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334570293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.520 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds