Wall clock time and date at job start Sun Mar 29 2020 22:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.63465 * 2 1 4 4 C 1.53012 * 109.79154 * 239.50399 * 2 1 3 5 5 C 1.50096 * 110.13393 * 190.45112 * 4 2 1 6 6 C 1.31552 * 123.79451 * 17.16939 * 5 4 2 7 7 C 1.47097 * 118.11058 * 179.85815 * 6 5 4 8 8 O 1.21606 * 120.00085 * 99.99164 * 7 6 5 9 9 N 1.34776 * 119.99860 * 280.00358 * 7 6 5 10 10 C 1.46500 * 120.00136 * 4.73094 * 9 7 6 11 11 C 1.46502 * 120.00056 * 184.73879 * 9 7 6 12 12 C 1.50702 * 109.47273 * 89.99454 * 11 9 7 13 13 H 1.07997 * 120.00199 * 0.02562 * 12 11 9 14 14 C 1.37881 * 119.99739 * 180.02562 * 12 11 9 15 15 N 1.31510 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99593 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47163 * 90.00215 * 16 14 12 18 18 H 1.48506 * 109.47226 * 209.99843 * 16 14 12 19 19 H 1.48500 * 109.47457 * 330.00063 * 16 14 12 20 20 C 1.50096 * 123.78603 * 359.58177 * 6 5 4 21 21 C 1.53003 * 110.13722 * 17.16321 * 20 6 5 22 22 H 1.09002 * 109.47390 * 299.61177 * 1 2 3 23 23 H 1.09009 * 109.46982 * 59.60377 * 1 2 3 24 24 H 1.08997 * 109.47383 * 179.60566 * 1 2 3 25 25 H 1.09001 * 109.36279 * 310.65398 * 4 2 1 26 26 H 1.09000 * 109.35813 * 70.38566 * 4 2 1 27 27 H 1.08002 * 118.10678 * 197.19210 * 5 4 2 28 28 H 1.09000 * 109.47143 * 94.38811 * 10 9 7 29 29 H 1.09004 * 109.47447 * 214.38226 * 10 9 7 30 30 H 1.08997 * 109.47536 * 334.38439 * 10 9 7 31 31 H 1.08997 * 109.47067 * 209.99820 * 11 9 7 32 32 H 1.09000 * 109.46850 * 329.99186 * 11 9 7 33 33 H 0.97004 * 119.99967 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.36223 * 137.37006 * 20 6 5 35 35 H 1.09001 * 109.36234 * 256.96125 * 20 6 5 36 36 H 1.09001 * 109.63002 * 69.96230 * 21 20 6 37 37 H 1.09007 * 109.63165 * 190.54388 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0480 -0.7306 -1.2406 5 6 3.5270 -0.9595 -1.1254 6 6 4.1935 -0.8817 0.0061 7 6 5.6425 -1.1332 -0.0243 8 8 6.4217 -0.1997 -0.0271 9 7 6.1064 -2.3984 -0.0495 10 6 5.1697 -3.5202 -0.1511 11 6 7.5474 -2.6518 0.0250 12 6 7.9580 -2.7973 1.4677 13 1 7.2194 -2.7103 2.2508 14 6 9.2767 -3.0417 1.7879 15 7 10.1760 -3.1482 0.8343 16 14 9.7856 -3.2214 3.5762 17 1 9.6824 -4.6470 3.9794 18 1 11.1879 -2.7609 3.7405 19 1 8.8913 -2.3994 4.4304 20 6 3.5619 -0.5453 1.3255 21 6 2.0452 -0.7308 1.2459 22 1 -0.3634 0.5078 0.8934 23 1 -0.3633 0.5200 -0.8865 24 1 -0.3634 -1.0276 -0.0071 25 1 1.5400 -1.6906 -1.3331 26 1 1.8456 -0.1278 -2.1258 27 1 4.0758 -1.2017 -2.0235 28 1 5.0579 -3.8065 -1.1969 29 1 5.5535 -4.3668 0.4182 30 1 4.2009 -3.2222 0.2496 31 1 7.7834 -3.5691 -0.5142 32 1 8.0867 -1.8176 -0.4238 33 1 11.1038 -3.3198 1.0596 34 1 3.9661 -1.2005 2.0972 35 1 3.7863 0.4906 1.5799 36 1 1.8095 -1.7924 1.1715 37 1 1.5776 -0.3106 2.1365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334570293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:19 Heat of formation + Delta-G solvation = -62.904881 kcal Electronic energy + Delta-G solvation = -17086.040065 eV Core-core repulsion = 14440.828436 eV Total energy + Delta-G solvation = -2645.211629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12291 -39.01666 -36.63260 -34.83445 -33.66526 -31.77168 -29.94866 -28.03969 -27.14470 -25.01969 -24.10163 -22.32921 -20.78293 -18.79741 -18.72252 -17.92225 -17.31284 -16.42727 -16.09745 -15.39611 -15.22746 -14.93416 -14.65366 -14.07625 -13.88512 -13.82540 -13.53793 -13.49567 -13.32856 -13.13863 -12.85633 -12.80583 -12.57176 -12.39813 -12.25131 -11.79157 -11.73114 -11.40698 -11.14802 -10.68148 -10.57903 -9.87235 -9.50902 -8.26215 -6.41970 0.92273 1.34469 1.38055 1.48332 1.69219 2.31870 2.45935 3.03245 3.58145 3.75586 3.95512 4.12508 4.28487 4.33582 4.39009 4.57153 4.64306 4.65085 4.81779 4.87060 4.88915 4.93584 5.02578 5.03945 5.07417 5.11713 5.19215 5.29723 5.38739 5.50203 5.57237 5.60862 5.78253 5.80042 6.00859 6.63109 6.69852 7.21501 7.37511 8.81476 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041070 B = 0.005664 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.597505 B = 4942.362766 C = 5188.913877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.061 0.939 4 C -0.077 4.077 5 C -0.102 4.102 6 C -0.158 4.158 7 C 0.530 3.470 8 O -0.606 6.606 9 N -0.603 5.603 10 C 0.083 3.917 11 C 0.256 3.744 12 C -0.547 4.547 13 H 0.053 0.947 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.972 3.028 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.273 1.273 20 C -0.072 4.072 21 C -0.102 4.102 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.026 0.974 32 H -0.004 1.004 33 H 0.269 0.731 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.635 0.863 -1.616 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.080 0.920 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.161 4.161 7 C 0.320 3.680 8 O -0.488 6.488 9 N -0.333 5.333 10 C -0.059 4.059 11 C 0.135 3.865 12 C -0.585 4.585 13 H 0.071 0.929 14 C -0.192 4.192 15 N -0.568 5.568 16 Si 0.795 3.205 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.198 1.198 20 C -0.109 4.109 21 C -0.139 4.139 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.015 0.985 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.033 1.254 -1.667 21.137 hybrid contribution 1.428 0.007 0.623 1.558 sum -19.605 1.261 -1.043 19.673 Atomic orbital electron populations 1.21763 0.92957 1.02657 1.02295 1.21227 0.96904 0.99078 0.94210 0.92026 1.20627 0.89272 1.02378 0.99122 1.22736 0.97962 0.96127 0.95282 1.20687 0.90244 1.06339 0.98811 1.19593 0.90390 0.82518 0.75518 1.90712 1.60401 1.44627 1.53085 1.48219 1.08653 1.06414 1.70005 1.21874 0.93054 0.88754 1.02210 1.18809 0.76420 0.94970 0.96318 1.21670 0.94273 1.49693 0.92857 0.92881 1.25908 0.96130 0.94402 1.02713 1.70057 1.02776 1.49456 1.34493 0.85357 0.77421 0.79073 0.78606 1.18506 1.20436 1.19758 1.20279 0.97223 1.01239 0.92167 1.21644 0.91490 1.01843 0.98933 0.92220 0.91940 0.91617 0.87856 0.89193 0.88218 0.91377 0.91420 0.89135 0.95630 0.98548 0.92258 0.92105 0.91674 0.90351 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 71.98 0.66 -0.91 16 2 C -0.10 -1.57 2.76 -10.67 -0.03 -1.60 16 3 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 4 C -0.08 -1.29 5.43 29.66 0.16 -1.13 16 5 C -0.10 -2.64 9.03 24.93 0.23 -2.42 16 6 C -0.16 -5.22 3.76 -18.29 -0.07 -5.29 16 7 C 0.53 24.64 6.81 86.57 0.59 25.23 16 8 O -0.61 -34.96 16.66 -4.05 -0.07 -35.03 16 9 N -0.60 -27.80 2.86 -855.46 -2.44 -30.25 16 10 C 0.08 2.74 10.13 127.77 1.29 4.04 16 11 C 0.26 14.61 5.22 85.63 0.45 15.06 16 12 C -0.55 -32.71 9.39 25.60 0.24 -32.47 16 13 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 14 C 0.01 0.45 5.46 84.66 0.46 0.91 16 15 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 16 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 20 C -0.07 -2.02 5.79 29.66 0.17 -1.85 16 21 C -0.10 -1.88 5.29 30.72 0.16 -1.72 16 22 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.10 1.31 8.11 -2.39 -0.02 1.29 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 2.71 7.95 -2.91 -0.02 2.69 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 2.28 8.11 -2.39 -0.02 2.26 16 30 H 0.09 2.45 6.55 -2.39 -0.02 2.43 16 31 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 32 H 0.00 -0.24 7.36 -2.39 -0.02 -0.26 16 33 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 37 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -76.59 305.56 5.14 -71.46 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.02 Total: 5.39 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 4.32 Total: -2.15 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -2.16 Total: -87.42 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.07 Total: -35.03 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -76.59 5.14 -71.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334570293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.551 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds