Wall clock time and date at job start Sun Mar 29 2020 22:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46998 * 2 1 4 4 N 1.46504 * 109.47178 * 175.28657 * 3 2 1 5 5 C 1.37100 * 120.00139 * 96.32360 * 4 3 2 6 6 H 1.07998 * 119.99575 * 212.72043 * 5 4 3 7 7 C 1.38941 * 120.00152 * 32.71414 * 5 4 3 8 8 N 1.31417 * 120.00035 * 212.31957 * 7 5 4 9 9 Si 1.86799 * 120.00026 * 32.32193 * 7 5 4 10 10 H 1.48505 * 109.47333 * 95.08185 * 9 7 5 11 11 H 1.48505 * 109.46984 * 215.07931 * 9 7 5 12 12 H 1.48503 * 109.47332 * 335.07926 * 9 7 5 13 13 C 1.34781 * 119.99425 * 276.32219 * 4 3 2 14 14 O 1.21286 * 120.00038 * 4.14761 * 13 4 3 15 15 C 1.50701 * 119.99424 * 184.15343 * 13 4 3 16 16 C 1.52998 * 119.30082 * 90.16584 * 15 13 4 17 17 C 1.53879 * 121.32835 * 161.99861 * 15 13 4 18 18 H 1.09001 * 121.33202 * 0.56126 * 17 15 13 19 19 C 1.54260 * 106.59780 * 138.05949 * 17 15 13 20 20 C 1.54889 * 104.19828 * 336.39038 * 19 17 15 21 21 C 1.54267 * 117.41006 * 295.81782 * 15 13 4 22 22 H 1.09003 * 109.47597 * 64.82888 * 1 2 3 23 23 H 1.09004 * 109.47202 * 184.83352 * 1 2 3 24 24 H 1.08999 * 109.47367 * 304.83258 * 1 2 3 25 25 H 1.09001 * 109.47037 * 240.00149 * 2 1 3 26 26 H 1.08992 * 109.47421 * 119.99872 * 2 1 3 27 27 H 1.09004 * 109.47119 * 295.27888 * 3 2 1 28 28 H 1.08997 * 109.47236 * 55.28455 * 3 2 1 29 29 H 0.97002 * 119.99774 * 180.02562 * 8 7 5 30 30 H 1.09000 * 117.46152 * 218.90432 * 16 15 13 31 31 H 1.09001 * 117.45850 * 3.70170 * 16 15 13 32 32 H 1.09002 * 110.48488 * 217.70997 * 19 17 15 33 33 H 1.09003 * 110.60077 * 95.12672 * 19 17 15 34 34 H 1.08995 * 110.75450 * 279.62656 * 20 19 17 35 35 H 1.09003 * 110.91180 * 156.32962 * 20 19 17 36 36 H 1.08995 * 110.49269 * 2.31465 * 21 15 13 37 37 H 1.09003 * 110.48331 * 124.82655 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5006 1.4441 0.1135 5 6 4.2756 1.5433 -1.0131 6 1 5.2337 1.0466 -1.0547 7 6 3.8284 2.2826 -2.1011 8 7 4.1560 1.9202 -3.3211 9 14 2.7614 3.7917 -1.8299 10 1 3.6167 5.0056 -1.8099 11 1 1.7711 3.9021 -2.9310 12 1 2.0483 3.6672 -0.5333 13 6 4.0823 1.3481 1.3255 14 8 3.3997 1.1849 2.3146 15 6 5.5810 1.4438 1.4515 16 6 6.2282 2.8130 1.6693 17 6 6.2525 1.7486 2.8021 18 1 5.6636 1.8949 3.7077 19 6 7.4782 0.8176 2.9048 20 6 7.1388 -0.3629 1.9612 21 6 6.4221 0.3383 0.7806 22 1 -0.3634 0.4371 -0.9301 23 1 -0.3634 -1.0240 0.0866 24 1 -0.3634 0.5870 0.8435 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.7473 1.9314 -0.9293 28 1 1.6093 1.9801 0.8447 29 1 3.8441 2.4365 -4.0807 30 1 7.1663 3.0136 1.1517 31 1 5.5645 3.6696 1.7872 32 1 7.6040 0.4640 3.9282 33 1 8.3786 1.3302 2.5659 34 1 6.4714 -1.0706 2.4528 35 1 8.0460 -0.8621 1.6208 36 1 5.7773 -0.3650 0.2538 37 1 7.1490 0.7748 0.0956 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421444374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:23 Heat of formation + Delta-G solvation = -24.132167 kcal Electronic energy + Delta-G solvation = -17840.681086 eV Core-core repulsion = 15197.150768 eV Total energy + Delta-G solvation = -2643.530318 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35489 -39.20907 -36.99913 -34.70138 -33.49366 -32.39048 -29.52971 -27.50912 -26.79980 -23.98186 -22.88944 -22.34295 -21.10456 -20.15868 -18.71731 -17.63432 -17.03056 -16.44582 -16.08536 -15.81005 -15.39118 -15.05132 -14.54477 -14.24005 -14.10244 -13.92037 -13.79912 -13.22072 -13.17827 -12.71831 -12.54971 -12.51392 -12.29935 -11.93506 -11.85620 -11.76010 -11.68093 -11.45047 -11.15343 -10.94782 -10.46634 -10.26830 -9.75128 -8.54861 -5.97726 1.20418 1.32656 1.40948 1.84454 2.20272 2.48406 2.83587 2.97079 3.65613 3.82595 3.95433 3.98555 4.14064 4.21754 4.35176 4.40472 4.53151 4.57494 4.60420 4.66091 4.73668 4.85166 4.90462 4.93823 5.02583 5.08033 5.12810 5.21504 5.24854 5.28825 5.29430 5.37728 5.48626 5.53113 6.11258 6.32705 7.00330 7.48195 7.83954 8.59110 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.010377 C = 0.008620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.667107 B = 2697.747938 C = 3247.600991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.111 3.889 4 N -0.462 5.462 5 C -0.347 4.347 6 H 0.099 0.901 7 C 0.041 3.959 8 N -0.877 5.877 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.254 1.254 13 C 0.500 3.500 14 O -0.627 6.627 15 C -0.156 4.156 16 C -0.122 4.122 17 C -0.138 4.138 18 H 0.100 0.900 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.073 4.073 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.279 0.721 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -0.908 6.388 7.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.012 4.012 4 N -0.180 5.180 5 C -0.474 4.474 6 H 0.117 0.883 7 C -0.165 4.165 8 N -0.513 5.513 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.178 1.178 13 C 0.291 3.709 14 O -0.515 6.515 15 C -0.159 4.159 16 C -0.159 4.159 17 C -0.157 4.157 18 H 0.119 0.881 19 C -0.120 4.120 20 C -0.155 4.155 21 C -0.111 4.111 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.466 -0.983 6.608 7.121 hybrid contribution -0.779 0.865 -0.534 1.280 sum 1.687 -0.118 6.074 6.305 Atomic orbital electron populations 1.21666 0.93154 1.02808 1.02088 1.21720 0.97612 0.96198 1.01006 1.21797 0.81805 0.97620 0.99991 1.43861 1.04841 1.63693 1.05627 1.19142 1.05012 1.32771 0.90486 0.88324 1.25677 0.97684 0.98915 0.94195 1.69971 1.45296 1.37223 0.98785 0.86736 0.79783 0.82147 0.79326 1.20563 1.19846 1.17826 1.19940 0.89445 0.79523 0.81991 1.90480 1.66032 1.56569 1.38370 1.22008 0.90948 1.00001 1.02948 1.23396 1.01787 0.90601 1.00158 1.23833 0.99501 1.00970 0.91366 0.88149 1.21947 0.95453 0.94039 1.00517 1.22686 1.00246 0.97562 0.94970 1.21820 0.96988 0.94869 0.97449 0.92089 0.90801 0.92440 0.92644 0.93495 0.91825 0.92678 0.91131 0.86683 0.89774 0.89559 0.89398 0.92501 0.88865 0.93675 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.91 71.98 0.71 -3.63 16 2 C -0.13 -5.14 6.21 30.59 0.19 -4.95 16 3 C 0.11 5.08 3.38 86.38 0.29 5.37 16 4 N -0.46 -22.91 2.25 -635.53 -1.43 -24.34 16 5 C -0.35 -18.09 8.91 84.04 0.75 -17.34 16 6 H 0.10 5.32 5.37 -2.91 -0.02 5.31 16 7 C 0.04 2.14 5.08 84.92 0.43 2.57 16 8 N -0.88 -47.63 13.96 21.66 0.30 -47.33 16 9 Si 0.90 40.66 26.15 68.60 1.79 42.45 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.25 -11.44 5.52 99.48 0.55 -10.89 16 13 C 0.50 24.38 7.08 87.66 0.62 25.00 16 14 O -0.63 -33.08 16.42 -3.05 -0.05 -33.13 16 15 C -0.16 -6.29 1.70 -52.20 -0.09 -6.38 16 16 C -0.12 -4.24 10.00 31.44 0.31 -3.93 16 17 C -0.14 -4.56 6.70 -9.22 -0.06 -4.62 16 18 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 19 C -0.08 -2.07 6.64 31.67 0.21 -1.86 16 20 C -0.12 -3.26 6.91 31.89 0.22 -3.04 16 21 C -0.07 -2.65 4.65 31.67 0.15 -2.51 16 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.05 2.02 7.97 -2.39 -0.02 2.00 16 27 H 0.06 2.90 4.00 -2.38 -0.01 2.89 16 28 H 0.05 2.55 7.63 -2.39 -0.02 2.53 16 29 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.04 1.86 7.31 -2.39 -0.02 1.84 16 37 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 Total: -1.00 -61.44 293.94 5.23 -56.21 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.88 Total: 21.45 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 3.74 Total: -15.31 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.13 Total: -71.67 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.05 Total: -33.13 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.79 Total: 42.45 kcal Total: -61.44 5.23 -56.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421444374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.076 kcal (2) G-P(sol) polarization free energy of solvation -61.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds