Wall clock time and date at job start Sun Mar 29 2020 21:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47699 * 2 1 4 4 C 1.50698 * 109.47543 * 239.99649 * 2 1 3 5 5 H 1.08002 * 120.00375 * 240.00760 * 4 2 1 6 6 C 1.37875 * 120.00107 * 59.99808 * 4 2 1 7 7 N 1.31521 * 119.99727 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00357 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47333 * 90.00448 * 8 6 4 10 10 H 1.48499 * 109.47309 * 210.00256 * 8 6 4 11 11 H 1.48501 * 109.47498 * 330.00712 * 8 6 4 12 12 C 1.53003 * 109.46873 * 119.99858 * 2 1 3 13 13 N 1.46504 * 109.47199 * 299.99971 * 12 2 1 14 14 C 1.34774 * 119.99864 * 180.27499 * 13 12 2 15 15 O 1.21608 * 120.00485 * 359.72382 * 14 13 12 16 16 C 1.47105 * 119.99722 * 179.72381 * 14 13 12 17 17 C 1.32997 * 120.00009 * 174.03372 * 16 14 13 18 18 C 1.50694 * 119.99939 * 352.94994 * 17 16 14 19 19 C 1.53001 * 117.49796 * 181.82388 * 18 17 16 20 20 C 1.52994 * 117.50031 * 113.16120 * 18 17 16 21 21 H 1.09000 * 109.46995 * 300.00350 * 1 2 3 22 22 H 1.09004 * 109.46690 * 60.00146 * 1 2 3 23 23 H 1.08998 * 109.47397 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47866 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.46930 * 299.99706 * 3 2 1 26 26 H 1.09003 * 109.46758 * 59.99503 * 3 2 1 27 27 H 0.96991 * 119.99824 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47471 * 179.97438 * 12 2 1 29 29 H 1.08996 * 109.47325 * 59.99798 * 12 2 1 30 30 H 0.96998 * 120.00012 * 359.97438 * 13 12 2 31 31 H 1.08000 * 120.00197 * 354.03148 * 16 14 13 32 32 H 1.08001 * 119.99692 * 172.94704 * 17 16 14 33 33 H 1.09010 * 115.55044 * 327.49017 * 18 17 16 34 34 H 1.08998 * 117.49945 * 359.97438 * 19 18 17 35 35 H 1.09006 * 117.49536 * 145.01869 * 19 18 17 36 36 H 1.09005 * 117.50159 * 214.97950 * 20 18 17 37 37 H 1.09000 * 117.49831 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4118 10 1 2.4868 -0.1416 -5.1122 11 1 3.6294 -1.7586 -3.7120 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8817 -0.4878 3.6696 15 8 2.5808 -1.4766 3.7813 16 6 1.3963 0.2093 4.8706 17 6 1.6213 -0.3068 6.0755 18 6 2.2308 -1.6788 6.2057 19 6 2.4252 -2.2343 7.6180 20 6 3.6362 -1.7738 6.8027 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1301 1.4425 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.7096 1.1615 -3.4844 28 1 3.1300 -0.7217 1.2492 29 1 1.6766 -1.7489 1.2494 30 1 0.9942 0.7583 2.3565 31 1 0.8573 1.1401 4.7739 32 1 1.3673 0.2575 6.9606 33 1 1.9695 -2.3860 5.4183 34 1 2.1128 -1.6072 8.4530 35 1 2.2924 -3.3069 7.7596 36 1 4.2996 -2.5436 6.4084 37 1 4.1203 -0.8438 7.1009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493273147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:55 Heat of formation + Delta-G solvation = -2.840633 kcal Electronic energy + Delta-G solvation = -16771.688543 eV Core-core repulsion = 14129.081495 eV Total energy + Delta-G solvation = -2642.607048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42745 -37.34274 -36.16942 -33.20570 -32.29807 -30.75173 -25.93561 -25.71024 -25.16487 -23.16526 -22.30759 -21.03897 -19.32024 -18.63236 -16.78340 -15.75753 -15.71556 -14.83864 -14.75778 -14.44089 -14.10001 -13.28911 -12.90459 -12.81513 -12.63843 -12.15077 -11.62419 -11.51202 -11.38021 -11.17400 -10.99401 -10.82986 -10.68055 -10.37656 -10.31232 -10.18018 -9.61535 -9.38293 -9.18409 -8.93475 -8.76104 -8.40914 -8.21559 -6.01014 -4.11001 1.51916 3.28967 3.35930 3.39886 3.65291 3.90042 4.05678 4.41558 4.65531 4.96537 5.09641 5.21521 5.25700 5.39642 5.50539 5.61737 5.88912 6.12895 6.20597 6.28937 6.35753 6.36930 6.53124 6.62726 6.82035 6.84581 6.97358 7.03821 7.10103 7.37915 7.57200 7.70605 8.02408 8.11292 8.21196 8.40270 8.79498 8.90269 9.54736 11.00415 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.049615 B = 0.004790 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.210276 B = 5844.488251 C = 6159.534322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.133 3.867 13 N -0.713 5.713 14 C 0.531 3.469 15 O -0.547 6.547 16 C -0.208 4.208 17 C -0.048 4.048 18 C -0.121 4.121 19 C -0.191 4.191 20 C -0.158 4.158 21 H 0.006 0.994 22 H 0.085 0.915 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.085 0.915 26 H 0.006 0.994 27 H 0.260 0.740 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.397 0.603 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 0.248 14.691 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.363 5.363 14 C 0.319 3.681 15 O -0.428 6.428 16 C -0.229 4.229 17 C -0.068 4.068 18 C -0.138 4.138 19 C -0.228 4.228 20 C -0.195 4.195 21 H 0.025 0.975 22 H 0.104 0.896 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.104 0.896 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.232 0.768 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.070 -0.336 14.567 14.571 hybrid contribution -0.010 0.087 -0.938 0.942 sum 0.060 -0.249 13.629 13.632 Atomic orbital electron populations 1.21823 0.97762 0.99148 1.00066 1.18364 0.92806 0.92786 0.90651 1.21822 0.98550 0.98355 1.00058 1.20991 1.31416 1.12050 0.89921 0.92476 1.24881 0.94889 0.94919 0.98843 1.69807 1.36770 1.22732 1.23186 0.86573 0.79321 0.79386 0.82601 1.20724 1.21274 1.19912 1.21685 0.98070 0.95728 0.83527 1.46265 1.52212 1.31742 1.06069 1.18595 0.81097 0.84458 0.83983 1.90706 1.38830 1.26556 1.86745 1.22756 1.04825 1.02036 0.93277 1.22998 0.93193 0.94015 0.96599 1.21540 0.99508 0.96443 0.96337 1.23081 1.03832 1.01238 0.94628 1.22781 0.90769 1.02841 1.03077 0.97465 0.89641 0.95485 0.95483 0.89628 0.97487 0.93033 0.92803 0.92821 0.76752 0.85646 0.86072 0.84887 0.89172 0.88852 0.88660 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.33 8.01 -34.44 -0.28 -13.61 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.71 9.35 55.43 0.52 -23.19 16 8 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 13 N -0.71 -12.94 4.95 -61.49 -0.30 -13.25 16 14 C 0.53 9.34 7.67 -12.66 -0.10 9.24 16 15 O -0.55 -11.16 13.31 5.27 0.07 -11.09 16 16 C -0.21 -2.78 10.02 -37.80 -0.38 -3.16 16 17 C -0.05 -0.58 9.74 -36.13 -0.35 -0.93 16 18 C -0.12 -1.59 4.35 -91.78 -0.40 -1.99 16 19 C -0.19 -1.98 10.24 -26.69 -0.27 -2.25 16 20 C -0.16 -1.89 10.24 -26.69 -0.27 -2.16 16 21 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 22 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 26 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 27 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.40 6.53 6.15 -40.82 -0.25 6.27 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 2.14 6.23 -51.92 -0.32 1.81 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 300.60 15.07 4.53 4.53 Total: -1.00 -28.11 300.60 -7.53 -35.64 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.69 Total: 6.06 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.64 Total: -14.49 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.21 Total: -36.44 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.11 -7.53 -35.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493273147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.800 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds