Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46817 * 2 1 4 4 N 1.46503 * 109.46947 * 119.99498 * 2 1 3 5 5 C 1.46496 * 120.00368 * 296.20783 * 4 2 1 6 6 C 1.50702 * 109.47238 * 89.99737 * 5 4 2 7 7 H 1.08002 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99917 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99748 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00197 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46985 * 89.99937 * 10 8 6 12 12 H 1.48493 * 109.47401 * 210.00028 * 10 8 6 13 13 H 1.48503 * 109.46935 * 330.00172 * 10 8 6 14 14 C 1.34775 * 119.99707 * 116.20874 * 4 2 1 15 15 O 1.21615 * 120.00129 * 185.08992 * 14 4 2 16 16 C 1.47109 * 120.00124 * 5.07766 * 14 4 2 17 17 C 1.32989 * 119.99886 * 180.39044 * 16 14 4 18 18 C 1.50694 * 120.00205 * 352.67164 * 17 16 14 19 19 C 1.53005 * 117.49878 * 180.57829 * 18 17 16 20 20 C 1.53006 * 117.49959 * 111.91712 * 18 17 16 21 21 H 1.08998 * 109.46943 * 60.00520 * 1 2 3 22 22 H 1.08998 * 109.47040 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47657 * 300.00126 * 1 2 3 24 24 H 1.08991 * 109.47201 * 239.99873 * 2 1 3 25 25 H 1.09004 * 109.47047 * 59.99868 * 3 2 1 26 26 H 1.09001 * 109.47224 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47372 * 299.99577 * 3 2 1 28 28 H 1.09004 * 109.47184 * 209.99911 * 5 4 2 29 29 H 1.09002 * 109.46761 * 330.00094 * 5 4 2 30 30 H 0.97000 * 119.99850 * 179.97438 * 9 8 6 31 31 H 1.07996 * 119.99849 * 0.39786 * 16 14 4 32 32 H 1.08001 * 119.99768 * 172.67455 * 17 16 14 33 33 H 1.09005 * 115.55316 * 326.24589 * 18 17 16 34 34 H 1.09000 * 117.49683 * 359.97438 * 19 18 17 35 35 H 1.09003 * 117.49923 * 145.02480 * 19 18 17 36 36 H 1.08997 * 117.49913 * 214.97682 * 20 18 17 37 37 H 1.08998 * 117.49608 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7342 -0.1434 2.5252 6 6 0.4349 -0.7116 3.0352 7 1 -0.1232 -1.4107 2.4301 8 6 -0.0413 -0.3389 4.2743 9 7 -1.1754 -0.8343 4.7191 10 14 0.9237 0.8709 5.3206 11 1 0.4832 2.2547 5.0104 12 1 0.6823 0.5849 6.7576 13 1 2.3727 0.7347 5.0253 14 6 2.7289 -1.8292 1.0741 15 8 3.0549 -2.4519 2.0666 16 6 3.1100 -2.3189 -0.2597 17 6 3.8045 -3.4466 -0.3805 18 6 4.3430 -4.1351 0.8470 19 6 5.1454 -5.4215 0.6407 20 6 3.7319 -5.4860 1.2247 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.6765 1.9564 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 2.5406 -0.4107 3.2082 29 1 1.6562 0.9420 2.4621 30 1 -1.5103 -0.5724 5.5910 31 1 2.8258 -1.7627 -1.1406 32 1 3.9826 -3.8689 -1.3585 33 1 4.6487 -3.4762 1.6597 34 1 5.2834 -5.7699 -0.3829 35 1 5.9787 -5.6090 1.3180 36 1 3.6359 -5.7159 2.2858 37 1 2.9400 -5.8765 0.5855 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493521563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = 14.391255 kcal Electronic energy + Delta-G solvation = -17282.959217 eV Core-core repulsion = 14641.099400 eV Total energy + Delta-G solvation = -2641.859817 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39649 -37.24317 -35.78722 -32.82751 -32.00297 -30.93756 -28.10410 -26.74224 -24.02943 -22.15068 -22.01385 -21.37519 -20.00462 -17.65937 -16.88728 -16.79409 -15.45270 -14.78490 -14.51474 -14.19200 -13.68444 -13.52580 -13.14995 -12.73638 -12.49344 -12.44875 -11.78950 -11.61647 -11.54525 -11.39373 -11.26134 -10.98443 -10.84487 -10.71680 -10.40722 -10.38341 -10.05796 -9.93372 -9.38036 -8.90644 -8.57961 -8.53168 -7.58351 -6.03057 -3.99653 1.73743 3.28809 3.37487 3.41708 3.86684 3.99287 4.24997 4.43941 4.80778 5.03832 5.17318 5.26466 5.29677 5.35094 5.48652 5.56718 5.61823 5.73327 5.77985 5.99919 6.09721 6.13537 6.26529 6.32438 6.34596 6.49660 6.50293 6.57282 6.75267 6.88008 7.03470 7.07694 7.47743 7.68556 8.39039 8.54562 9.01736 9.11129 9.58091 11.10385 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.008113 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.539325 B = 3450.491607 C = 4184.069595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.131 3.869 3 C -0.163 4.163 4 N -0.585 5.585 5 C 0.216 3.784 6 C -0.517 4.517 7 H 0.076 0.924 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.535 3.465 15 O -0.532 6.532 16 C -0.209 4.209 17 C -0.052 4.052 18 C -0.121 4.121 19 C -0.193 4.193 20 C -0.157 4.157 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.089 -0.945 -12.269 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 C -0.221 4.221 4 N -0.316 5.316 5 C 0.095 3.905 6 C -0.556 4.556 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.324 3.676 15 O -0.412 6.412 16 C -0.230 4.230 17 C -0.072 4.072 18 C -0.139 4.139 19 C -0.230 4.230 20 C -0.194 4.194 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.155 0.845 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.115 -1.231 -11.563 14.775 hybrid contribution 0.148 0.694 0.520 0.880 sum 9.263 -0.537 -11.042 14.423 Atomic orbital electron populations 1.22158 0.94546 1.02615 1.02291 1.21098 0.95194 0.92893 0.88096 1.22177 1.00887 0.96615 1.02420 1.47938 1.51944 1.23924 1.07808 1.19608 0.97690 0.93577 0.79623 1.21356 1.04457 1.27073 1.02698 0.90556 1.24856 0.94801 0.96211 0.97272 1.69899 1.20187 1.44274 1.19492 0.86923 0.81337 0.81638 0.80307 1.20222 1.21069 1.18945 1.18413 0.79221 0.80893 0.89078 1.90700 1.55277 1.55533 1.39659 1.22911 1.03456 0.99019 0.97598 1.22978 0.93090 0.93645 0.97476 1.21616 1.02893 0.90548 0.98797 1.23069 0.95156 1.03072 1.01660 1.22777 0.95418 0.99487 1.01705 0.93290 0.92614 0.90039 0.90173 0.91564 0.92839 0.92090 0.94495 0.95625 0.92723 0.85654 0.86337 0.84522 0.89365 0.88999 0.88592 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.58 37.16 0.32 -2.39 16 2 C 0.13 2.14 3.16 -67.93 -0.21 1.93 16 3 C -0.16 -2.31 9.10 37.16 0.34 -1.97 16 4 N -0.59 -12.18 2.39 -168.85 -0.40 -12.58 16 5 C 0.22 5.28 3.72 -5.19 -0.02 5.26 16 6 C -0.52 -14.75 8.40 -34.44 -0.29 -15.04 16 7 H 0.08 2.40 7.84 -52.49 -0.41 1.99 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 10 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 14 C 0.53 11.14 7.57 -12.66 -0.10 11.04 16 15 O -0.53 -12.94 12.82 5.26 0.07 -12.87 16 16 C -0.21 -3.28 9.33 -37.80 -0.35 -3.63 16 17 C -0.05 -0.73 9.74 -36.13 -0.35 -1.09 16 18 C -0.12 -1.88 4.39 -91.77 -0.40 -2.28 16 19 C -0.19 -2.37 10.24 -26.69 -0.27 -2.64 16 20 C -0.16 -2.30 10.24 -26.69 -0.27 -2.57 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.08 1.65 6.92 -51.93 -0.36 1.29 16 24 H 0.08 1.09 5.18 -51.93 -0.27 0.82 16 25 H 0.07 1.04 6.55 -51.93 -0.34 0.70 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.98 6.56 -51.93 -0.34 0.64 16 29 H 0.03 0.60 5.66 -51.93 -0.29 0.30 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.13 1.58 5.81 -52.49 -0.31 1.27 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 2.53 6.12 -51.93 -0.32 2.21 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -32.63 299.45 -7.04 -39.67 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.61 Total: 2.77 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.71 Total: -11.43 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.37 Total: -39.67 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.63 -7.04 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493521563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.058 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds