Wall clock time and date at job start Sun Mar 29 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09004 * 115.56049 * 325.58211 * 16 14 13 18 18 C 1.53121 * 117.51518 * 111.31924 * 16 14 13 19 19 C 1.52465 * 117.51606 * 179.84475 * 16 14 13 20 20 C 1.53251 * 128.58638 * 134.94887 * 19 16 14 21 21 C 1.53887 * 86.88589 * 194.89050 * 20 19 16 22 22 C 1.53259 * 128.58035 * 10.15628 * 19 16 14 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 30 30 H 1.09000 * 117.51745 * 214.89810 * 18 16 14 31 31 H 1.09008 * 117.51374 * 359.97438 * 18 16 14 32 32 H 1.09000 * 113.65078 * 309.39128 * 20 19 16 33 33 H 1.09002 * 113.64849 * 80.39419 * 20 19 16 34 34 H 1.08991 * 113.59134 * 270.39591 * 21 20 19 35 35 H 1.09001 * 113.65791 * 139.57945 * 21 20 19 36 36 H 1.09005 * 113.64280 * 279.60517 * 22 19 16 37 37 H 1.08992 * 113.64838 * 50.61447 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.8405 3.8454 -3.1882 18 6 -1.0591 2.6733 -3.4917 19 6 -1.3548 3.9582 -2.7237 20 6 -1.7647 5.3282 -3.2747 21 6 -3.1059 5.1257 -2.5478 22 6 -2.3582 4.1839 -1.5874 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 5.8770 0.4826 2.1132 29 1 2.2718 2.1232 -1.9978 30 1 -0.9763 2.7429 -4.5763 31 1 -1.4913 1.7476 -3.1114 32 1 -1.1731 6.1536 -2.8787 33 1 -1.8555 5.3533 -4.3606 34 1 -3.8590 4.6223 -3.1540 35 1 -3.4837 6.0282 -2.0674 36 1 -2.9247 3.2917 -1.3208 37 1 -1.9318 4.6908 -0.7219 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:50 Heat of formation + Delta-G solvation = 6.127474 kcal Electronic energy + Delta-G solvation = -17313.860737 eV Core-core repulsion = 14671.642575 eV Total energy + Delta-G solvation = -2642.218161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03806 -38.21575 -35.24172 -33.48634 -32.29814 -31.37051 -27.57636 -25.60484 -24.05516 -23.02451 -22.49338 -20.38561 -19.47676 -18.29008 -17.21069 -16.00644 -15.80488 -15.18841 -14.98104 -14.69631 -14.12197 -13.54478 -13.12893 -12.56690 -12.45957 -12.13971 -12.07452 -11.79251 -11.74748 -11.48257 -11.33566 -11.06675 -10.86549 -10.61820 -10.25711 -9.98604 -9.89714 -9.63579 -9.50369 -9.20285 -8.94497 -8.73257 -7.99584 -6.19850 -4.21940 3.08886 3.24245 3.36040 3.41492 3.84389 3.99865 4.32732 4.59944 4.69766 4.86921 4.92771 5.00804 5.14102 5.40035 5.53809 5.63410 5.71940 5.77788 5.85450 5.88908 5.99005 6.04187 6.07340 6.20619 6.24233 6.38159 6.47939 6.68051 6.71916 6.87575 6.98266 7.30943 7.35665 7.55731 8.20432 8.59574 8.78615 9.04476 9.41711 10.92345 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042110 B = 0.006215 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.764145 B = 4503.930356 C = 4688.762693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.699 5.699 14 C 0.532 3.468 15 O -0.546 6.546 16 C -0.175 4.175 17 H 0.118 0.882 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.099 4.099 21 C -0.143 4.143 22 C -0.080 4.080 23 H 0.052 0.948 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.267 0.733 29 H 0.394 0.606 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.215 4.769 -9.372 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.346 5.346 14 C 0.317 3.683 15 O -0.425 6.425 16 C -0.196 4.196 17 H 0.136 0.864 18 C -0.163 4.163 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.180 4.180 22 C -0.117 4.117 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.227 0.773 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.579 4.686 -8.562 16.723 hybrid contribution 0.189 -0.583 0.326 0.695 sum -13.390 4.103 -8.236 16.247 Atomic orbital electron populations 1.21867 0.96979 0.98895 1.02249 1.22279 0.94339 1.00043 1.01004 1.19126 0.95517 0.88446 0.82994 0.93405 1.21071 0.88704 1.39648 1.07793 0.90248 1.24834 0.94857 0.95169 0.97674 1.69870 1.08696 1.44620 1.29826 0.86899 0.80972 0.79932 0.80885 1.20271 1.22192 1.18481 1.46116 1.14909 1.55832 1.17762 1.19458 0.82386 0.78659 0.87767 1.90641 1.51656 1.60028 1.40206 1.22248 0.93769 1.05166 0.98434 0.86433 1.22759 0.99976 0.95866 0.97665 1.22228 0.95511 0.94544 1.00673 1.22487 0.96728 0.94808 0.99570 1.22819 0.96194 1.00010 0.99017 1.22284 0.94818 0.99105 0.95477 0.92915 0.95101 0.92920 0.92873 0.92366 0.92317 0.77266 0.88102 0.88277 0.89729 0.91557 0.90425 0.91519 0.91438 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.10 5.11 -26.73 -0.14 -3.24 16 3 C 0.24 5.81 1.83 -69.08 -0.13 5.68 16 4 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 5 C -0.53 -14.56 9.31 -34.44 -0.32 -14.88 16 6 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 9 Si 0.88 21.98 24.41 -169.99 -4.15 17.83 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.27 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 13 N -0.70 -14.01 5.02 -54.93 -0.28 -14.28 16 14 C 0.53 10.01 6.18 -10.99 -0.07 9.94 16 15 O -0.55 -11.75 12.28 5.56 0.07 -11.69 16 16 C -0.17 -2.52 6.19 -91.99 -0.57 -3.09 16 17 H 0.12 1.49 8.14 -51.93 -0.42 1.06 16 18 C -0.13 -1.53 10.24 -26.88 -0.28 -1.80 16 19 C -0.13 -1.67 2.88 -154.73 -0.45 -2.12 16 20 C -0.10 -1.04 8.10 -26.14 -0.21 -1.25 16 21 C -0.14 -1.47 8.08 -25.81 -0.21 -1.68 16 22 C -0.08 -1.07 6.47 -26.13 -0.17 -1.24 16 23 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.04 5.65 -51.93 -0.29 0.75 16 26 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.39 7.07 8.54 -40.82 -0.35 6.73 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.29 8.14 -51.92 -0.42 0.86 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 LS Contribution 292.13 15.07 4.40 4.40 Total: -1.00 -30.45 292.13 -7.30 -37.75 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.81 Total: 6.01 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.31 Total: -14.16 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.50 Total: -40.16 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.15 Total: 17.83 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.45 -7.30 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.879 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds