Wall clock time and date at job start Sun Mar 29 2020 21:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32997 * 120.00286 * 2 1 4 4 C 1.50697 * 120.00286 * 179.97438 * 3 2 1 5 5 C 1.47102 * 119.99581 * 359.97438 * 3 2 1 6 6 O 1.21621 * 119.99768 * 334.85160 * 5 3 2 7 7 N 1.34777 * 120.00148 * 154.85394 * 5 3 2 8 8 C 1.46925 * 120.62914 * 173.70250 * 7 5 3 9 9 C 1.53197 * 108.77302 * 126.41667 * 8 7 5 10 10 C 1.53032 * 109.31312 * 54.63132 * 9 8 7 11 11 C 1.53043 * 109.54263 * 298.63629 * 10 9 8 12 12 H 1.09008 * 109.49524 * 301.41669 * 11 10 9 13 13 C 1.50698 * 109.52717 * 181.33592 * 11 10 9 14 14 H 1.08003 * 119.99768 * 0.07891 * 13 11 10 15 15 C 1.37878 * 119.99961 * 180.08289 * 13 11 10 16 16 N 1.31515 * 120.00066 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99763 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47157 * 60.00137 * 17 15 13 19 19 H 1.48505 * 109.46766 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47520 * 299.99481 * 17 15 13 21 21 C 1.46924 * 120.62572 * 353.72539 * 7 5 3 22 22 H 1.09002 * 109.46894 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47267 * 300.00210 * 1 2 3 24 24 H 1.09000 * 109.47204 * 60.00507 * 1 2 3 25 25 H 1.08008 * 120.00266 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46668 * 277.45679 * 4 3 2 27 27 H 1.08994 * 109.47582 * 37.46183 * 4 3 2 28 28 H 1.08997 * 109.46873 * 157.46761 * 4 3 2 29 29 H 1.09000 * 109.58475 * 246.19982 * 8 7 5 30 30 H 1.09000 * 109.58915 * 6.48354 * 8 7 5 31 31 H 1.09003 * 109.49354 * 174.58558 * 9 8 7 32 32 H 1.09004 * 109.49456 * 294.67860 * 9 8 7 33 33 H 1.09004 * 109.45979 * 178.61577 * 10 9 8 34 34 H 1.09000 * 109.46262 * 58.66017 * 10 9 8 35 35 H 0.96997 * 119.99890 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.58593 * 113.80086 * 21 7 5 37 37 H 1.08996 * 109.70895 * 353.44710 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.3069 2.4754 -0.4486 7 7 2.0143 3.5377 0.4954 8 6 1.3497 4.8428 0.3778 9 6 1.2534 5.4742 1.7702 10 6 2.6483 5.5334 2.3967 11 6 3.2026 4.1148 2.5470 12 1 2.5285 3.5248 3.1680 13 6 4.5625 4.1713 3.1940 14 1 4.9891 5.1238 3.4719 15 6 5.2620 3.0071 3.4310 16 7 4.7423 1.8472 3.0929 17 14 6.9479 3.0772 4.2323 18 1 6.8331 3.7059 5.5728 19 1 7.4851 1.7002 4.3764 20 1 7.8656 3.8808 3.3855 21 6 3.3210 3.4679 1.1634 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 2.0471 -0.9354 0.0004 26 1 4.0418 1.0186 1.0198 27 1 4.0426 0.3360 -0.6241 28 1 4.0424 2.1009 -0.3933 29 1 1.9309 5.4910 -0.2780 30 1 0.3498 4.7078 -0.0346 31 1 0.8497 6.4832 1.6849 32 1 0.5976 4.8714 2.3984 33 1 2.5862 6.0048 3.3776 34 1 3.3100 6.1158 1.7555 35 1 5.2343 1.0281 3.2601 36 1 4.0630 4.0041 0.5717 37 1 3.6233 2.4263 1.2717 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:10 Heat of formation + Delta-G solvation = -18.508757 kcal Electronic energy + Delta-G solvation = -17918.006974 eV Core-core repulsion = 15274.720506 eV Total energy + Delta-G solvation = -2643.286469 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.69022 -36.86748 -34.67774 -33.18568 -32.18262 -30.05403 -29.09790 -25.51292 -25.14085 -23.54678 -22.19229 -20.86118 -19.27323 -17.58865 -16.44090 -15.73583 -14.80553 -14.69619 -14.51198 -14.04640 -13.61637 -13.34301 -13.01462 -12.70051 -12.63651 -12.07044 -11.91352 -11.85805 -11.67109 -11.51321 -11.06229 -11.01427 -10.73574 -10.52695 -10.29953 -10.23157 -9.76923 -9.21056 -9.08630 -8.78795 -8.51952 -8.33223 -7.68324 -6.16277 -4.20739 2.02092 3.24119 3.29701 3.32447 3.73212 3.96145 4.32894 5.13901 5.23281 5.42773 5.57189 5.63384 5.69273 5.82287 5.91972 6.10237 6.17845 6.19063 6.28078 6.34886 6.38683 6.44454 6.57572 6.65683 6.79463 6.83919 6.94998 6.96656 7.02399 7.10440 7.36397 7.56499 7.76149 7.91433 8.18574 8.37423 8.82045 8.91040 9.44886 10.91048 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023226 B = 0.009690 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.250078 B = 2888.990822 C = 3814.746268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C -0.160 4.160 4 C -0.132 4.132 5 C 0.551 3.449 6 O -0.569 6.569 7 N -0.599 5.599 8 C 0.112 3.888 9 C -0.132 4.132 10 C -0.112 4.112 11 C 0.037 3.963 12 H 0.030 0.970 13 C -0.511 4.511 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.074 3.926 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.264 0.736 36 H 0.042 0.958 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -0.505 -4.711 5.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.124 4.124 3 C -0.163 4.163 4 C -0.188 4.188 5 C 0.341 3.659 6 O -0.451 6.451 7 N -0.330 5.330 8 C -0.011 4.011 9 C -0.170 4.170 10 C -0.149 4.149 11 C 0.018 3.982 12 H 0.048 0.952 13 C -0.549 4.549 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.046 4.046 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.136 0.864 26 H 0.137 0.863 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.486 -0.634 -4.928 6.070 hybrid contribution 1.100 0.121 0.564 1.242 sum -2.386 -0.513 -4.364 5.000 Atomic orbital electron populations 1.20925 0.92562 1.00475 1.03695 1.23299 0.96501 0.96579 0.96034 1.21486 0.96859 0.92958 1.05019 1.21401 0.90660 1.01715 1.04985 1.18546 0.85441 0.84334 0.77541 1.90650 1.18783 1.86106 1.49559 1.48404 1.22463 1.06288 1.55853 1.21468 0.98156 0.84367 0.97081 1.21924 0.99284 0.99406 0.96418 1.21638 0.93884 1.00316 0.99112 1.19007 0.96289 0.90474 0.92467 0.95205 1.21140 1.01766 0.92966 1.39038 0.92357 1.24967 0.98034 0.95412 0.95351 1.69725 1.38141 0.97555 1.47915 0.86609 0.84056 0.77100 0.79985 1.20309 1.21183 1.20250 1.23355 0.79919 1.08047 0.93312 0.93408 0.91720 0.89775 0.86412 0.86255 0.93127 0.91533 0.92505 0.90217 0.92350 0.92260 0.93096 0.93247 0.92625 0.93980 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.53 36.00 0.31 -1.63 16 2 C -0.10 -1.76 9.98 -36.13 -0.36 -2.12 16 3 C -0.16 -3.08 5.64 -102.85 -0.58 -3.66 16 4 C -0.13 -2.41 7.97 36.00 0.29 -2.13 16 5 C 0.55 11.68 7.24 -12.66 -0.09 11.58 16 6 O -0.57 -12.62 13.21 5.26 0.07 -12.55 16 7 N -0.60 -12.53 2.97 -174.16 -0.52 -13.04 16 8 C 0.11 2.08 6.44 -3.71 -0.02 2.05 16 9 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 10 C -0.11 -2.26 5.11 -26.69 -0.14 -2.40 16 11 C 0.04 0.87 2.25 -91.65 -0.21 0.67 16 12 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 13 C -0.51 -13.06 8.56 -34.44 -0.29 -13.35 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -22.83 10.17 55.43 0.56 -22.26 16 17 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 21 C 0.07 1.64 3.68 -3.71 -0.01 1.63 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.14 7.91 -51.93 -0.41 0.73 16 24 H 0.08 1.45 6.74 -51.93 -0.35 1.10 16 25 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 26 H 0.12 2.47 5.41 -51.93 -0.28 2.19 16 27 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 28 H 0.07 1.25 6.24 -51.93 -0.32 0.92 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.47 7.00 -51.93 -0.36 1.10 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 36 H 0.04 0.94 8.02 -51.93 -0.42 0.53 16 37 H 0.15 3.38 1.61 -52.29 -0.08 3.29 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -26.89 286.13 -7.54 -34.43 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.57 Total: 4.59 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.37 Total: -10.37 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.05 Total: -35.31 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.89 -7.54 -34.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.920 kcal (2) G-P(sol) polarization free energy of solvation -26.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds