Wall clock time and date at job start Sun Mar 29 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47295 * 126.48599 * 3 2 1 5 5 H 1.09004 * 110.62895 * 303.34624 * 4 3 2 6 6 C 1.55138 * 110.70598 * 66.44943 * 4 3 2 7 7 C 1.54908 * 101.68619 * 154.02265 * 6 4 3 8 8 N 1.47887 * 104.77420 * 322.97931 * 7 6 4 9 9 C 1.46907 * 111.01481 * 146.33028 * 8 7 6 10 10 C 1.52999 * 109.46947 * 49.12722 * 9 8 7 11 11 O 1.42901 * 109.47507 * 64.99664 * 10 9 8 12 12 C 1.42896 * 113.99986 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46871 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00495 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99974 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99690 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99989 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47269 * 59.99543 * 17 15 13 19 19 H 1.48501 * 109.47049 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46731 * 299.99546 * 17 15 13 21 21 C 1.47444 * 108.58784 * 24.04325 * 8 7 6 22 22 H 4.44653 * 5.63451 * 180.02562 * 4 1 2 23 23 H 1.09003 * 109.47340 * 6.48433 * 3 2 1 24 24 H 1.09000 * 109.47307 * 246.48617 * 3 2 1 25 25 H 1.09002 * 110.99302 * 272.13266 * 6 4 3 26 26 H 1.08995 * 110.99003 * 35.91153 * 6 4 3 27 27 H 1.08993 * 110.37866 * 81.77867 * 7 6 4 28 28 H 1.09005 * 110.37455 * 204.12444 * 7 6 4 29 29 H 1.09001 * 109.46696 * 169.12028 * 9 8 7 30 30 H 1.09004 * 109.47057 * 289.12370 * 9 8 7 31 31 H 1.09000 * 109.46749 * 184.99883 * 10 9 8 32 32 H 1.09000 * 109.46782 * 305.00005 * 10 9 8 33 33 H 1.09000 * 109.47474 * 300.00043 * 12 11 10 34 34 H 1.09001 * 109.46876 * 60.00694 * 12 11 10 35 35 H 0.97008 * 119.99336 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.89066 * 239.63908 * 21 8 7 37 37 H 1.09001 * 109.89084 * 118.44467 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1556 0.8586 -1.1598 5 1 2.7551 0.4998 -2.1079 6 6 2.7911 2.3505 -0.9399 7 6 3.8984 3.0670 -1.7525 8 7 5.1117 2.2488 -1.5395 9 6 5.9649 2.2505 -2.7355 10 6 6.1681 3.6892 -3.2149 11 8 6.8981 4.4215 -2.2286 12 6 7.1436 5.7846 -2.5802 13 6 7.9164 6.4571 -1.4749 14 1 8.1921 5.8995 -0.5921 15 6 8.2705 7.7846 -1.5903 16 7 7.9343 8.4638 -2.6652 17 14 9.2291 8.6180 -0.2206 18 1 10.5234 7.9171 -0.0248 19 1 9.4830 10.0349 -0.5853 20 1 8.4420 8.5647 1.0376 21 6 4.6984 0.8780 -1.1874 22 1 -1.0502 0.0000 0.0003 23 1 3.0097 -1.0203 -0.1161 24 1 3.0091 0.4108 0.9423 25 1 1.8036 2.5748 -1.3434 26 1 2.8485 2.6149 0.1159 27 1 3.6377 3.0904 -2.8105 28 1 4.0511 4.0785 -1.3759 29 1 6.9313 1.8086 -2.4929 30 1 5.4868 1.6689 -3.5237 31 1 6.7262 3.6847 -4.1511 32 1 5.1977 4.1600 -3.3725 33 1 7.7222 5.8233 -3.5031 34 1 6.1937 6.2991 -2.7249 35 1 8.1838 9.3977 -2.7464 36 1 5.0901 0.6134 -0.2052 37 1 5.0648 0.1762 -1.9366 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886365244.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:29 Heat of formation + Delta-G solvation = 2.148594 kcal Electronic energy + Delta-G solvation = -16401.087713 eV Core-core repulsion = 13758.697015 eV Total energy + Delta-G solvation = -2642.390699 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31283 -36.64879 -34.81206 -32.76108 -31.97759 -29.71589 -28.69415 -26.82963 -25.49393 -22.67355 -22.21915 -20.54515 -20.11472 -18.30573 -16.43753 -16.02203 -15.78496 -15.42758 -14.71030 -14.25108 -14.22457 -13.90558 -13.60134 -13.36861 -12.89472 -12.56265 -12.21961 -11.73827 -11.58265 -11.18512 -11.10619 -11.01571 -10.78895 -10.74702 -10.68877 -10.39295 -10.26000 -10.18338 -9.91573 -9.05271 -8.74658 -8.09337 -8.00406 -6.05826 -4.06798 2.64684 2.68542 3.36387 3.38397 3.42978 4.13610 4.15293 4.40002 4.58858 4.68601 4.86834 4.95101 5.29054 5.30569 5.34208 5.37835 5.42913 5.56755 5.62654 5.69729 5.79898 5.82526 5.93161 6.00559 6.03304 6.12043 6.26215 6.27112 6.40806 7.14900 7.20948 7.31919 7.45939 7.48433 7.85942 8.22077 8.66696 9.07745 9.57902 11.05838 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037801 B = 0.004172 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.534004 B = 6709.758748 C = 6981.410779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.177 4.177 3 C -0.004 4.004 4 C -0.105 4.105 5 H 0.076 0.924 6 C -0.123 4.123 7 C 0.044 3.956 8 N -0.514 5.514 9 C 0.056 3.944 10 C 0.060 3.940 11 O -0.380 6.380 12 C 0.194 3.806 13 C -0.511 4.511 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.046 3.954 22 H 0.215 0.785 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.264 0.736 36 H 0.079 0.921 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 -16.178 1.556 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.177 4.177 3 C -0.041 4.041 4 C -0.125 4.125 5 H 0.094 0.906 6 C -0.161 4.161 7 C -0.084 4.084 8 N -0.238 5.238 9 C -0.072 4.072 10 C -0.018 4.018 11 O -0.299 6.299 12 C 0.120 3.880 13 C -0.549 4.549 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.735 3.265 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.082 4.082 22 H 0.232 0.768 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.162 -15.850 2.038 19.493 hybrid contribution -0.306 0.358 -0.441 0.645 sum -11.468 -15.492 1.597 19.341 Atomic orbital electron populations 1.24868 0.95949 1.01593 1.01288 1.23149 0.94558 0.99915 1.00111 1.18757 0.84651 1.00969 0.99689 1.22393 0.96175 0.95900 0.98020 0.90582 1.22788 0.98315 0.93535 1.01449 1.23075 0.88298 0.98967 0.98036 1.63598 1.16543 1.08664 1.35000 1.22350 0.98012 0.96466 0.90350 1.22359 0.95740 0.91516 0.92155 1.87958 1.74262 1.25536 1.42169 1.20172 0.95032 0.76591 0.96224 1.21037 1.34662 0.95136 1.04101 0.91522 1.24952 0.96319 0.96954 0.96350 1.69963 1.46901 1.09655 1.27532 0.86396 0.80299 0.77982 0.81794 1.20024 1.21244 1.19998 1.22928 0.92712 0.90724 1.01839 0.76845 0.89512 0.89014 0.91222 0.90439 0.93909 0.89376 0.90006 0.94412 0.94311 0.94432 0.98022 0.97971 0.92695 0.90238 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.06 19.25 29.55 0.57 -1.49 16 2 C -0.18 -1.83 12.88 -37.13 -0.48 -2.31 16 3 C 0.00 -0.03 5.08 -29.52 -0.15 -0.18 16 4 C -0.11 -1.09 2.95 -88.80 -0.26 -1.35 16 5 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 6 C -0.12 -1.46 6.06 -24.59 -0.15 -1.61 16 7 C 0.04 0.64 5.22 -2.27 -0.01 0.63 16 8 N -0.51 -7.95 5.26 -231.20 -1.22 -9.17 16 9 C 0.06 0.87 5.21 -3.82 -0.02 0.85 16 10 C 0.06 1.15 5.74 37.16 0.21 1.36 16 11 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16 12 C 0.19 5.46 5.69 36.00 0.20 5.66 16 13 C -0.51 -15.40 9.43 -34.44 -0.32 -15.73 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 17 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.05 0.54 6.47 -2.83 -0.02 0.52 16 22 H 0.21 1.29 7.80 -54.08 -0.42 0.87 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 27 H 0.04 0.60 7.05 -51.93 -0.37 0.23 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.04 0.49 7.96 -51.93 -0.41 0.08 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.70 6.29 -51.93 -0.33 0.37 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 34 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.08 0.89 7.82 -51.93 -0.41 0.49 16 37 H 0.05 0.56 7.49 -51.93 -0.39 0.17 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -32.58 310.92 -7.79 -40.37 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -6.09 Total: -4.51 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.52 Total: -12.12 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.48 Total: -35.84 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.81 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.58 -7.79 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886365244.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.517 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds