Wall clock time and date at job start Sun Mar 29 2020 22:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99867 * 2 1 4 4 H 1.09005 * 109.47008 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47606 * 119.99642 * 3 2 1 6 6 C 1.53000 * 109.46873 * 294.99971 * 5 3 2 7 7 C 1.53002 * 109.47114 * 239.99744 * 3 2 1 8 8 C 1.50701 * 109.47093 * 64.99666 * 7 3 2 9 9 O 1.21283 * 119.99967 * 0.02562 * 8 7 3 10 10 N 1.34782 * 119.99781 * 180.02562 * 8 7 3 11 11 C 1.37094 * 119.99609 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99888 * 224.28366 * 11 10 8 13 13 C 1.38952 * 120.00321 * 44.28703 * 11 10 8 14 14 N 1.31411 * 119.99360 * 18.20775 * 13 11 10 15 15 Si 1.86793 * 120.00188 * 198.20646 * 13 11 10 16 16 H 1.48500 * 109.47086 * 89.99926 * 15 13 11 17 17 H 1.48499 * 109.47161 * 210.00315 * 15 13 11 18 18 H 1.48501 * 109.47126 * 330.00097 * 15 13 11 19 19 C 1.46497 * 119.99736 * 359.97438 * 10 8 7 20 20 C 1.53007 * 117.49663 * 183.22814 * 19 10 8 21 21 C 1.52998 * 117.50033 * 114.60833 * 19 10 8 22 22 H 1.08002 * 119.99806 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.00486 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.00199 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47460 * 175.00151 * 5 3 2 26 26 H 1.08995 * 109.47028 * 54.99345 * 5 3 2 27 27 H 1.09002 * 109.47146 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47412 * 59.99663 * 6 5 3 29 29 H 1.09001 * 109.47181 * 299.99568 * 6 5 3 30 30 H 1.08997 * 109.47229 * 184.99723 * 7 3 2 31 31 H 1.09001 * 109.46514 * 304.99586 * 7 3 2 32 32 H 0.97006 * 119.99671 * 174.94115 * 14 13 11 33 33 H 1.08994 * 115.55587 * 328.93007 * 19 10 8 34 34 H 1.09009 * 117.49732 * 359.97438 * 20 19 10 35 35 H 1.08994 * 117.50351 * 145.01822 * 20 19 10 36 36 H 1.08998 * 117.49882 * 214.97680 * 21 19 10 37 37 H 1.09006 * 117.49703 * 359.97254 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9430 1.3863 1.2492 6 6 2.0563 1.4309 2.4952 7 6 2.9431 1.3861 -1.2492 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3997 -2.3633 10 7 2.6303 1.5025 -3.7002 11 6 1.8358 1.5429 -4.8167 12 1 2.0813 0.9369 -5.6764 13 6 0.7146 2.3633 -4.8424 14 7 0.6017 3.3485 -3.9802 15 14 -0.6318 2.0659 -6.1026 16 1 -1.6373 1.1286 -5.5407 17 1 -1.2892 3.3544 -6.4381 18 1 -0.0391 1.4780 -7.3308 19 6 4.0884 1.5395 -3.8369 20 6 4.6620 1.6982 -5.2465 21 6 4.7637 0.3522 -4.5262 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5401 0.9353 -0.0004 24 1 1.8501 -0.9353 0.0004 25 1 3.5539 2.2880 1.2056 26 1 3.5904 0.5107 1.2953 27 1 2.6829 1.4883 3.3853 28 1 1.4454 0.5293 2.5390 29 1 1.4088 2.3066 2.4493 30 1 3.5540 2.2878 -1.2056 31 1 3.5906 0.5105 -1.2950 32 1 -0.1438 3.9659 -4.0442 33 1 4.6254 2.0180 -3.0180 34 1 3.9544 1.7747 -6.0721 35 1 5.5764 2.2813 -5.3551 36 1 5.7451 0.0498 -4.1609 37 1 4.1230 -0.4567 -4.8776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930615373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:28 Heat of formation + Delta-G solvation = 9.133549 kcal Electronic energy + Delta-G solvation = -17545.323036 eV Core-core repulsion = 14903.235228 eV Total energy + Delta-G solvation = -2642.087808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.68883 -36.78035 -35.41987 -32.67746 -31.29034 -30.91491 -29.42076 -25.42229 -23.46487 -21.65343 -21.21657 -21.03367 -19.36659 -18.68551 -16.22800 -15.95596 -14.82801 -14.64365 -14.42400 -13.97770 -13.82270 -13.51715 -13.16471 -12.70850 -12.35763 -11.96357 -11.56148 -11.34250 -11.10601 -10.88894 -10.86683 -10.79327 -10.71859 -10.36755 -10.24234 -10.11381 -9.93738 -9.87449 -9.66687 -8.70770 -8.53338 -7.77852 -6.89744 -6.03149 -3.77654 3.08017 3.34247 3.40907 3.44344 4.25849 4.34776 4.85618 4.89637 5.24410 5.25496 5.41398 5.48813 5.63179 5.67053 5.78727 5.83333 5.85889 6.02558 6.09041 6.12740 6.21494 6.25877 6.29087 6.35231 6.42132 6.46236 6.59654 6.64467 6.83013 6.88911 6.98608 7.33208 7.59377 7.69232 8.36794 9.17504 9.29178 9.78307 10.44656 11.06044 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.009263 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.430944 B = 3021.981557 C = 3902.958011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.041 4.041 4 H 0.079 0.921 5 C -0.115 4.115 6 C -0.149 4.149 7 C -0.127 4.127 8 C 0.485 3.515 9 O -0.522 6.522 10 N -0.435 5.435 11 C -0.346 4.346 12 H 0.073 0.927 13 C 0.075 3.925 14 N -0.835 5.835 15 Si 0.910 3.090 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.079 3.921 20 C -0.176 4.176 21 C -0.210 4.210 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.262 0.738 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 -3.412 6.731 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.060 4.060 4 H 0.097 0.903 5 C -0.153 4.153 6 C -0.206 4.206 7 C -0.167 4.167 8 C 0.272 3.728 9 O -0.399 6.399 10 N -0.157 5.157 11 C -0.473 4.473 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.469 5.469 15 Si 0.737 3.263 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.027 4.027 20 C -0.213 4.213 21 C -0.249 4.249 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.649 -3.293 6.907 9.511 hybrid contribution -0.486 -0.029 -0.818 0.952 sum 5.163 -3.322 6.088 8.646 Atomic orbital electron populations 1.23556 0.95989 1.00711 1.00247 1.22521 0.95829 0.96896 1.00369 1.20091 0.96601 0.96741 0.92564 0.90280 1.21548 0.97907 1.01360 0.94479 1.21754 0.99769 1.02040 0.97050 1.21641 0.98631 1.01789 0.94660 1.19796 0.88618 0.80791 0.83569 1.90523 1.14532 1.49676 1.85132 1.42821 1.00813 1.66542 1.05520 1.18798 1.07307 1.25967 0.95253 0.90885 1.25198 0.98601 0.93681 0.96057 1.69832 1.29798 1.12461 1.34788 0.86257 0.82093 0.77555 0.80350 1.20433 1.21418 1.20034 1.21657 0.85696 0.99943 0.95447 1.23051 1.01845 0.98897 0.97551 1.23305 1.01336 0.93105 1.07143 0.89971 0.88767 0.88845 0.92237 0.92352 0.93485 0.92564 0.92916 0.90983 0.91067 0.92814 0.88181 0.87586 0.89936 0.89947 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 13.22 29.01 0.38 -2.72 16 2 C -0.14 -2.47 6.76 -36.03 -0.24 -2.71 16 3 C -0.04 -0.73 1.82 -91.77 -0.17 -0.90 16 4 H 0.08 1.61 7.60 -51.93 -0.39 1.22 16 5 C -0.12 -1.59 5.39 -26.73 -0.14 -1.74 16 6 C -0.15 -1.87 9.73 37.16 0.36 -1.51 16 7 C -0.13 -2.45 3.78 -27.88 -0.11 -2.55 16 8 C 0.48 12.23 6.71 -10.98 -0.07 12.16 16 9 O -0.52 -14.96 11.93 5.55 0.07 -14.89 16 10 N -0.43 -11.02 2.83 -107.73 -0.31 -11.32 16 11 C -0.35 -9.60 7.92 -14.93 -0.12 -9.72 16 12 H 0.07 1.98 7.26 -52.49 -0.38 1.60 16 13 C 0.07 2.13 4.39 -17.47 -0.08 2.05 16 14 N -0.84 -24.95 11.74 55.50 0.65 -24.30 16 15 Si 0.91 22.36 29.59 -169.99 -5.03 17.33 16 16 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 C 0.08 1.61 5.87 -67.93 -0.40 1.21 16 20 C -0.18 -3.25 9.80 -26.73 -0.26 -3.51 16 21 C -0.21 -3.67 10.36 -26.73 -0.28 -3.95 16 22 H 0.08 1.36 8.06 -52.49 -0.42 0.94 16 23 H 0.09 1.87 7.83 -52.49 -0.41 1.46 16 24 H 0.09 1.54 8.06 -52.48 -0.42 1.11 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.71 7.38 -51.93 -0.38 0.33 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 31 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 32 H 0.26 7.53 8.32 -40.82 -0.34 7.19 16 33 H 0.10 1.83 6.96 -51.93 -0.36 1.47 16 34 H 0.11 2.18 6.72 -51.92 -0.35 1.83 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -31.74 304.01 -7.19 -38.93 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.03 Total: 3.55 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.12 Total: -13.88 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.35 Total: -35.62 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.07 Total: -14.89 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.74 -7.19 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.064 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds