Wall clock time and date at job start Sun Mar 29 2020 22:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08999 * 109.46182 * 116.70460 * 3 2 1 5 5 C 1.53048 * 109.45146 * 236.61436 * 3 2 1 6 6 C 1.53120 * 109.27450 * 179.12791 * 5 3 2 7 7 C 1.53123 * 109.21163 * 302.43753 * 6 5 3 8 8 C 1.53039 * 109.27546 * 57.62218 * 7 6 5 9 9 N 1.46842 * 109.52666 * 300.81951 * 8 7 6 10 10 C 1.46892 * 111.00192 * 185.84212 * 9 8 7 11 11 C 1.53003 * 109.47390 * 293.95474 * 10 9 8 12 12 O 1.42898 * 109.46923 * 64.99514 * 11 10 9 13 13 C 1.42894 * 113.99926 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47134 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00233 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00056 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99766 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 119.99960 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47471 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47161 * 119.99930 * 18 16 14 21 21 H 1.48501 * 109.47189 * 239.99702 * 18 16 14 22 22 H 4.18727 * 15.04100 * 0.02562 * 4 2 1 23 23 H 1.09000 * 109.45669 * 59.21288 * 5 3 2 24 24 H 1.09003 * 109.55501 * 299.09532 * 5 3 2 25 25 H 1.09002 * 109.52427 * 182.50027 * 6 5 3 26 26 H 1.08995 * 109.52208 * 62.37346 * 6 5 3 27 27 H 1.08999 * 109.50194 * 177.56161 * 7 6 5 28 28 H 1.09002 * 109.50248 * 297.64565 * 7 6 5 29 29 H 1.08997 * 109.46051 * 60.83848 * 8 7 6 30 30 H 1.09004 * 109.45969 * 180.80356 * 8 7 6 31 31 H 1.08997 * 109.47341 * 53.95882 * 10 9 8 32 32 H 1.09004 * 109.47377 * 173.95469 * 10 9 8 33 33 H 1.09000 * 109.47227 * 185.00280 * 11 10 9 34 34 H 1.09005 * 109.46657 * 305.00061 * 11 10 9 35 35 H 1.08995 * 109.47577 * 300.00813 * 13 12 11 36 36 H 1.09005 * 109.47034 * 60.00545 * 13 12 11 37 37 H 0.96997 * 119.99508 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.4627 -0.9181 5 6 3.1553 0.7950 1.2050 6 6 4.6864 0.7747 1.2132 7 6 5.1709 -0.6774 1.2471 8 6 4.6031 -1.4277 0.0401 9 7 3.1359 -1.3814 0.0792 10 6 2.5546 -2.2079 -0.9870 11 6 2.9017 -1.6023 -2.3485 12 8 4.3150 -1.6636 -2.5507 13 6 4.7474 -1.1212 -3.8000 14 6 6.2461 -1.2379 -3.9064 15 1 6.8118 -1.6815 -3.1005 16 6 6.8952 -0.7774 -5.0324 17 7 6.2063 -0.2367 -6.0136 18 14 8.7528 -0.9227 -5.1646 19 1 9.2879 -1.5635 -3.9365 20 1 9.1016 -1.7501 -6.3474 21 1 9.3457 0.4305 -5.3149 22 1 -1.0500 0.0002 0.0006 23 1 2.7804 0.3424 2.1230 24 1 2.8054 1.8251 1.1372 25 1 5.0529 1.3017 2.0941 26 1 5.0619 1.2632 0.3141 27 1 6.2600 -0.6986 1.2093 28 1 4.8292 -1.1537 2.1660 29 1 4.9569 -0.9590 -0.8782 30 1 4.9346 -2.4657 0.0690 31 1 2.9589 -3.2182 -0.9250 32 1 1.4713 -2.2424 -0.8702 33 1 2.3973 -2.1636 -3.1351 34 1 2.5752 -0.5627 -2.3775 35 1 4.2814 -1.6728 -4.6164 36 1 4.4592 -0.0716 -3.8596 37 1 6.6631 0.0876 -6.8055 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934517963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:49 Heat of formation + Delta-G solvation = 2.103824 kcal Electronic energy + Delta-G solvation = -17339.701025 eV Core-core repulsion = 14697.308385 eV Total energy + Delta-G solvation = -2642.392640 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40621 -36.54966 -33.79365 -33.17228 -32.53033 -29.92379 -28.66802 -26.85851 -24.24166 -23.17010 -22.27884 -21.41382 -19.57541 -17.85496 -16.43670 -15.99120 -15.69832 -15.12101 -14.90424 -14.31807 -14.21010 -13.79479 -13.52415 -12.88471 -12.70183 -12.34624 -12.03271 -11.69743 -11.38027 -11.14659 -10.98315 -10.84265 -10.72537 -10.65355 -10.49283 -10.36015 -10.20325 -10.05063 -9.80554 -9.13618 -8.86412 -8.25466 -7.79003 -6.14932 -4.17102 2.86187 2.96072 3.26160 3.32981 3.38819 4.23491 4.31456 4.46493 4.86119 5.06498 5.15438 5.21760 5.22119 5.47541 5.58034 5.61294 5.65967 5.87831 5.91368 5.96690 5.99717 6.10763 6.14016 6.20775 6.25253 6.35429 6.41004 6.53514 6.85403 7.06444 7.34879 7.36879 7.42586 7.72940 7.74663 8.10087 8.49731 8.95955 9.48119 10.96618 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027789 B = 0.006539 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.356123 B = 4280.887265 C = 4765.139533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.160 4.160 3 C 0.183 3.817 4 H 0.070 0.930 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.117 4.117 8 C 0.044 3.956 9 N -0.525 5.525 10 C 0.058 3.942 11 C 0.024 3.976 12 O -0.387 6.387 13 C 0.192 3.808 14 C -0.513 4.513 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.215 0.785 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.004 0.996 36 H 0.002 0.998 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 0.696 12.694 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.160 4.160 3 C 0.075 3.925 4 H 0.088 0.912 5 C -0.140 4.140 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.083 4.083 9 N -0.249 5.249 10 C -0.070 4.070 11 C -0.055 4.055 12 O -0.307 6.307 13 C 0.118 3.882 14 C -0.551 4.551 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.232 0.768 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.020 0.980 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.190 0.497 13.108 14.959 hybrid contribution 0.664 0.434 -1.374 1.586 sum -6.525 0.931 11.735 13.459 Atomic orbital electron populations 1.24783 0.95716 1.00784 1.02090 1.22946 0.94033 0.99765 0.99295 1.18662 0.83951 0.90929 0.98926 0.91237 1.21542 0.96027 0.98914 0.97539 1.21593 0.94829 0.97475 1.02056 1.21628 0.99979 0.95040 0.98869 1.22432 0.85372 1.01436 0.99037 1.62249 1.08893 1.08129 1.45606 1.22274 0.99446 0.97747 0.87569 1.23018 0.85836 0.99192 0.97474 1.87908 1.18354 1.83630 1.40800 1.20210 0.95440 0.92505 0.80034 1.21069 0.90891 1.39880 1.03299 0.91476 1.24960 0.99212 0.95046 0.95288 1.69977 1.35846 1.40538 1.07360 0.86300 0.84292 0.77823 0.78212 1.19423 1.20834 1.20842 0.76774 0.91132 0.91625 0.91926 0.91587 0.91512 0.91999 0.89587 0.90832 0.89986 0.90121 0.94191 0.94456 0.97833 0.97979 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.68 19.25 29.55 0.57 -2.11 16 2 C -0.16 -2.33 10.97 -37.12 -0.41 -2.73 16 3 C 0.18 2.79 1.71 -70.50 -0.12 2.67 16 4 H 0.07 1.21 6.49 -51.93 -0.34 0.87 16 5 C -0.10 -1.34 5.33 -26.64 -0.14 -1.48 16 6 C -0.12 -1.58 6.00 -26.61 -0.16 -1.74 16 7 C -0.12 -1.62 6.10 -26.65 -0.16 -1.78 16 8 C 0.04 0.73 4.61 -3.84 -0.02 0.71 16 9 N -0.52 -8.35 4.68 -230.06 -1.08 -9.42 16 10 C 0.06 0.93 5.51 -3.83 -0.02 0.91 16 11 C 0.02 0.45 5.71 37.16 0.21 0.66 16 12 O -0.39 -8.95 7.00 -35.23 -0.25 -9.20 16 13 C 0.19 5.21 5.69 36.01 0.20 5.41 16 14 C -0.51 -14.80 9.43 -34.44 -0.32 -15.12 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.22 1.82 7.80 -54.09 -0.42 1.40 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.73 5.54 -51.93 -0.29 1.44 16 30 H 0.07 1.23 8.06 -51.93 -0.42 0.82 16 31 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 32 H 0.08 1.19 7.02 -51.93 -0.36 0.82 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.72 6.15 -51.93 -0.32 0.40 16 35 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 300.14 15.07 4.52 4.52 Total: -1.00 -30.27 300.14 -7.47 -37.74 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.92 Total: -1.10 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.47 Total: -13.09 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.34 Total: -35.48 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.25 Total: -9.20 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.27 -7.47 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934517963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.846 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds