Wall clock time and date at job start Sun Mar 29 2020 22:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47501 * 14.32498 * 3 2 1 5 5 C 1.36938 * 119.99456 * 269.15336 * 4 3 2 6 6 H 1.08006 * 119.99864 * 192.58359 * 5 4 3 7 7 C 1.38810 * 120.00298 * 12.59047 * 5 4 3 8 8 N 1.31623 * 120.00239 * 23.98142 * 7 5 4 9 9 Si 1.86804 * 119.99762 * 203.98918 * 7 5 4 10 10 H 1.48494 * 109.47342 * 59.99841 * 9 7 5 11 11 H 1.48501 * 109.46718 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46941 * 299.99238 * 9 7 5 13 13 C 1.46496 * 120.00166 * 89.14926 * 4 3 2 14 14 C 1.52999 * 109.47390 * 270.00234 * 13 4 3 15 15 C 1.53002 * 109.47039 * 305.00224 * 14 13 4 16 16 O 1.42900 * 109.47230 * 65.00168 * 14 13 4 17 17 C 1.42901 * 113.99830 * 65.63772 * 16 14 13 18 18 C 1.52998 * 109.47235 * 185.00382 * 14 13 4 19 19 C 1.53005 * 117.52222 * 110.13666 * 18 14 13 20 20 C 1.53002 * 59.99990 * 107.48033 * 19 18 14 21 21 H 4.40642 * 5.51298 * 179.97438 * 4 1 2 22 22 H 1.08997 * 109.47064 * 254.31478 * 3 2 1 23 23 H 1.09006 * 109.46337 * 134.32063 * 3 2 1 24 24 H 0.96999 * 120.00136 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.46901 * 150.00403 * 13 4 3 26 26 H 1.09000 * 109.47323 * 30.00472 * 13 4 3 27 27 H 1.09003 * 109.46893 * 299.99858 * 15 14 13 28 28 H 1.08997 * 109.47654 * 59.99861 * 15 14 13 29 29 H 1.08999 * 109.47125 * 180.02562 * 15 14 13 30 30 H 1.08999 * 109.46576 * 175.38759 * 17 16 14 31 31 H 1.08998 * 109.47052 * 295.38882 * 17 16 14 32 32 H 1.09001 * 109.46566 * 55.39446 * 17 16 14 33 33 H 1.09004 * 115.54542 * 324.43435 * 18 14 13 34 34 H 1.08993 * 117.49811 * 214.97295 * 19 18 14 35 35 H 1.08996 * 117.49075 * 359.97438 * 19 18 14 36 36 H 1.08994 * 117.50399 * 252.51300 * 20 19 18 37 37 H 1.09003 * 117.49699 * 107.48934 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3374 -0.3417 5 6 3.3802 -2.2503 0.6490 6 1 3.9265 -3.1551 0.4265 7 6 2.9266 -2.0131 1.9393 8 7 1.9020 -1.2116 2.1397 9 14 3.7704 -2.8313 3.3912 10 1 5.1967 -2.4199 3.4310 11 1 3.1009 -2.4173 4.6504 12 1 3.6846 -4.3068 3.2464 13 6 3.3617 -1.6986 -1.7433 14 6 2.0810 -2.2962 -2.3295 15 6 1.6233 -3.4711 -1.4629 16 8 1.0588 -1.2980 -2.3570 17 6 1.3320 -0.2105 -3.2429 18 6 2.3524 -2.7875 -3.7527 19 6 2.3585 -4.2991 -3.9898 20 6 1.1954 -3.4487 -4.5046 21 1 -1.0497 -0.0004 0.0001 22 1 3.0092 0.2786 0.9894 23 1 3.0089 0.7189 -0.7353 24 1 1.5852 -1.0455 3.0414 25 1 4.1657 -2.4321 -1.8039 26 1 3.6387 -0.8083 -2.3078 27 1 2.4030 -4.2325 -1.4420 28 1 1.4299 -3.1212 -0.4489 29 1 0.7112 -3.8971 -1.8808 30 1 0.4743 0.4616 -3.2683 31 1 2.2092 0.3327 -2.8915 32 1 1.5207 -0.5967 -4.2446 33 1 3.0505 -2.1843 -4.3332 34 1 3.0605 -4.6902 -4.7260 35 1 2.1695 -4.9437 -3.1314 36 1 0.2410 -3.5338 -3.9851 37 1 1.1324 -3.2803 -5.5797 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120071060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:43 Heat of formation + Delta-G solvation = 61.650155 kcal Electronic energy + Delta-G solvation = -18272.862485 eV Core-core repulsion = 15633.051968 eV Total energy + Delta-G solvation = -2639.810517 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55708 -37.54997 -36.63146 -33.38300 -33.16607 -31.18871 -28.18218 -27.79401 -26.86991 -24.99720 -23.21677 -22.54701 -19.85654 -19.23243 -18.08197 -17.40085 -16.96894 -16.36591 -16.06933 -15.75794 -15.21801 -14.97702 -14.52821 -14.37143 -13.51804 -13.33436 -13.23815 -13.00606 -12.68501 -12.59046 -12.32148 -12.23356 -12.08229 -11.95599 -11.80031 -11.34774 -11.17833 -11.00647 -10.64013 -10.40636 -10.13870 -10.01616 -8.76290 -7.70527 -5.07816 1.49773 1.53405 1.58191 2.52099 2.73517 2.85410 2.95130 3.35277 3.42534 3.71181 4.06670 4.10381 4.18589 4.29303 4.32254 4.40629 4.59005 4.71780 4.73808 4.83374 4.90146 4.95530 4.99046 5.02467 5.11424 5.14128 5.22380 5.35147 5.41559 5.42653 5.73738 5.76839 5.87464 6.35753 6.75925 7.20054 7.72876 7.94572 8.36296 9.28151 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.009942 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.468475 B = 2815.740838 C = 3390.538979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.088 4.088 3 C 0.278 3.722 4 N -0.589 5.589 5 C -0.248 4.248 6 H 0.074 0.926 7 C -0.047 4.047 8 N -0.907 5.907 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.304 1.304 12 H -0.283 1.283 13 C 0.128 3.872 14 C 0.128 3.872 15 C -0.114 4.114 16 O -0.374 6.374 17 C 0.035 3.965 18 C -0.186 4.186 19 C -0.171 4.171 20 C -0.163 4.163 21 H 0.199 0.801 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.242 0.758 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -1.200 -12.659 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.091 4.091 3 C 0.153 3.847 4 N -0.308 5.308 5 C -0.377 4.377 6 H 0.092 0.908 7 C -0.243 4.243 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.209 1.209 11 H -0.231 1.231 12 H -0.210 1.210 13 C 0.001 3.999 14 C 0.086 3.914 15 C -0.171 4.171 16 O -0.293 6.293 17 C -0.062 4.062 18 C -0.205 4.205 19 C -0.207 4.207 20 C -0.200 4.200 21 H 0.216 0.784 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.242 -1.184 -12.379 12.498 hybrid contribution -0.025 -0.382 1.144 1.206 sum 1.217 -1.565 -11.236 11.409 Atomic orbital electron populations 1.24356 0.95764 1.04917 1.07651 1.23946 0.95161 0.95993 0.93982 1.17617 0.83500 0.85672 0.97930 1.44233 1.74991 1.10201 1.01405 1.19278 1.27866 1.02361 0.88242 0.90790 1.25371 0.97642 1.01312 0.99985 1.70322 1.23444 1.42105 1.19419 0.85618 0.78525 0.78054 0.79886 1.20869 1.23077 1.20966 1.21572 0.95363 0.98404 0.84529 1.21633 0.89774 0.88413 0.91587 1.21545 0.99338 0.96124 1.00109 1.88122 1.43999 1.32829 1.64360 1.22616 1.00681 0.89718 0.93151 1.22878 1.03407 0.96876 0.97323 1.23123 1.01733 0.92419 1.03472 1.22813 0.93161 1.03993 1.00057 0.78422 0.92324 0.93005 0.94853 0.92238 0.92415 0.91820 0.93442 0.94234 0.90705 0.95199 0.92918 0.86981 0.87102 0.89102 0.90358 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.67 18.46 74.32 1.37 -13.30 16 2 C -0.09 -4.32 8.89 31.13 0.28 -4.04 16 3 C 0.28 13.26 5.44 84.57 0.46 13.72 16 4 N -0.59 -27.70 2.16 -712.55 -1.54 -29.24 16 5 C -0.25 -12.82 7.44 84.03 0.62 -12.19 16 6 H 0.07 3.75 7.92 -2.91 -0.02 3.73 16 7 C -0.05 -2.55 4.86 84.86 0.41 -2.14 16 8 N -0.91 -52.11 9.22 21.65 0.20 -51.91 16 9 Si 0.95 44.60 29.62 68.60 2.03 46.63 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.13 4.89 4.68 86.38 0.40 5.29 16 14 C 0.13 4.58 0.72 -10.79 -0.01 4.57 16 15 C -0.11 -4.60 6.67 71.98 0.48 -4.12 16 16 O -0.37 -14.44 7.11 -148.98 -1.06 -15.50 16 17 C 0.03 1.08 10.01 113.37 1.14 2.21 16 18 C -0.19 -5.12 3.66 -10.79 -0.04 -5.16 16 19 C -0.17 -4.15 9.59 30.60 0.29 -3.85 16 20 C -0.16 -4.03 9.81 30.60 0.30 -3.73 16 21 H 0.20 8.30 7.80 -4.43 -0.03 8.26 16 22 H 0.06 3.12 6.51 -2.39 -0.02 3.10 16 23 H 0.05 2.17 7.65 -2.38 -0.02 2.15 16 24 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 25 H 0.06 2.21 8.02 -2.38 -0.02 2.19 16 26 H 0.06 2.01 6.30 -2.39 -0.02 1.99 16 27 H 0.06 2.39 6.92 -2.39 -0.02 2.37 16 28 H 0.05 2.42 6.29 -2.39 -0.02 2.40 16 29 H 0.04 1.50 7.05 -2.39 -0.02 1.48 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.03 0.93 6.41 -2.39 -0.02 0.91 16 32 H 0.05 1.37 6.71 -2.39 -0.02 1.35 16 33 H 0.11 2.74 7.94 -2.38 -0.02 2.72 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.42 5.86 -2.39 -0.01 2.41 16 36 H 0.08 2.22 7.53 -2.39 -0.02 2.20 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -60.79 291.29 6.38 -54.40 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.04 Total: 18.35 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 5.71 Total: -22.75 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -1.34 Total: -81.15 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.06 Total: -15.50 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -60.79 6.38 -54.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120071060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.055 kcal (2) G-P(sol) polarization free energy of solvation -60.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds