Wall clock time and date at job start Sun Mar 29 2020 21:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 C 1.53001 * 109.47095 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47069 * 180.02562 * 4 3 2 6 6 C 1.36934 * 120.00399 * 269.43401 * 5 4 3 7 7 H 1.07999 * 119.99761 * 326.04804 * 6 5 4 8 8 C 1.38810 * 120.00405 * 146.03587 * 6 5 4 9 9 N 1.31615 * 119.99916 * 336.66915 * 8 6 5 10 10 Si 1.86803 * 119.99833 * 156.66279 * 8 6 5 11 11 H 1.48496 * 109.47276 * 60.00312 * 10 8 6 12 12 H 1.48508 * 109.47099 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47087 * 300.00146 * 10 8 6 14 14 C 1.46499 * 120.00018 * 89.43397 * 5 4 3 15 15 C 1.50707 * 109.47338 * 90.00024 * 14 5 4 16 16 C 1.34515 * 125.78547 * 89.99479 * 15 14 5 17 17 C 1.41388 * 106.83429 * 180.02562 * 16 15 14 18 18 C 1.34511 * 106.84512 * 0.02562 * 17 16 15 19 19 C 1.50694 * 125.79119 * 179.73935 * 18 17 16 20 20 O 1.34299 * 125.78931 * 270.02771 * 15 14 5 21 21 H 1.08994 * 109.47372 * 299.99523 * 1 2 3 22 22 H 1.08999 * 109.47001 * 59.99811 * 1 2 3 23 23 H 1.09000 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47010 * 240.00084 * 2 1 3 25 25 H 1.08996 * 109.47254 * 120.00639 * 2 1 3 26 26 H 1.09004 * 109.47123 * 60.00153 * 3 2 1 27 27 H 1.08996 * 109.47591 * 300.00432 * 3 2 1 28 28 H 1.08994 * 109.47007 * 60.00076 * 4 3 2 29 29 H 1.08999 * 109.47001 * 300.00189 * 4 3 2 30 30 H 0.97005 * 119.99634 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47358 * 330.00005 * 14 5 4 32 32 H 1.09006 * 109.47521 * 209.99862 * 14 5 4 33 33 H 1.07993 * 126.58167 * 0.05181 * 16 15 14 34 34 H 1.08004 * 126.57407 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.47596 * 89.99458 * 19 18 17 36 36 H 1.09002 * 109.47119 * 209.99838 * 19 18 17 37 37 H 1.09001 * 109.46814 * 329.99349 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2981 3.4657 -1.1842 7 1 4.6650 2.9102 -2.0346 8 6 4.0695 4.8305 -1.2931 9 7 3.2253 5.4236 -0.4758 10 14 4.9600 5.8254 -2.5995 11 1 4.6175 5.2960 -3.9440 12 1 4.5448 7.2482 -2.5068 13 1 6.4260 5.7231 -2.3859 14 6 4.2901 3.5181 1.2702 15 6 5.7091 3.2827 1.7199 16 6 6.7701 4.0490 1.4093 17 6 7.8945 3.4656 2.0372 18 6 7.4535 2.3773 2.6934 19 6 8.3026 1.4336 3.5055 20 8 6.1290 2.2718 2.4980 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 3.9337 0.9286 -0.8891 29 1 3.9329 0.9288 0.8908 30 1 3.0659 6.3774 -0.5517 31 1 3.6020 3.1363 2.0244 32 1 4.1245 4.5870 1.1351 33 1 6.7641 4.9393 0.7980 34 1 8.9123 3.8248 1.9975 35 1 8.3421 1.7781 4.5388 36 1 7.8687 0.4342 3.4719 37 1 9.3111 1.4058 3.0929 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203297745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:37 Heat of formation + Delta-G solvation = 11.718262 kcal Electronic energy + Delta-G solvation = -17101.067695 eV Core-core repulsion = 14459.091968 eV Total energy + Delta-G solvation = -2641.975727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68851 -36.36408 -34.08562 -32.41672 -31.61538 -31.07584 -28.50887 -27.04924 -24.44844 -23.37213 -21.17388 -20.80836 -20.06797 -19.30597 -16.99952 -15.59867 -15.31654 -14.84948 -14.74031 -13.88142 -13.59936 -13.53586 -13.19131 -12.86684 -12.65312 -12.18510 -12.04538 -11.91868 -11.84494 -11.44025 -11.25184 -10.82467 -10.73492 -10.61242 -10.46426 -10.29963 -10.12898 -9.93105 -9.66713 -9.06120 -8.56111 -7.44365 -6.75306 -5.89867 -3.39638 2.51235 3.34058 3.41020 3.44539 3.46770 3.75174 4.45549 5.23513 5.30672 5.35737 5.47588 5.59654 5.66923 5.67725 5.73330 5.77398 5.91665 6.01989 6.06801 6.22696 6.37340 6.42320 6.45366 6.51261 6.63677 6.65938 6.72223 6.89803 7.01167 7.07475 7.26490 7.40981 7.44139 7.76786 8.08518 8.42315 9.07709 9.71649 10.27937 11.13552 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.010471 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.553907 B = 2673.386815 C = 4384.718161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.147 3.853 5 N -0.572 5.572 6 C -0.256 4.256 7 H 0.063 0.937 8 C 0.012 3.988 9 N -0.887 5.887 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.281 1.281 14 C 0.210 3.790 15 C 0.009 3.991 16 C -0.219 4.219 17 C -0.209 4.209 18 C -0.057 4.057 19 C -0.063 4.063 20 O -0.183 6.183 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.258 0.742 31 H 0.041 0.959 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 -6.660 5.198 8.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.021 3.979 5 N -0.291 5.291 6 C -0.385 4.385 7 H 0.081 0.919 8 C -0.187 4.187 9 N -0.530 5.530 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.207 1.207 14 C 0.083 3.917 15 C -0.044 4.044 16 C -0.239 4.239 17 C -0.228 4.228 18 C -0.106 4.106 19 C -0.120 4.120 20 O -0.080 6.080 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.756 -6.725 5.292 8.990 hybrid contribution 0.710 0.804 -0.843 1.364 sum 3.466 -5.921 4.450 8.178 Atomic orbital electron populations 1.21755 0.96732 1.00409 1.01691 1.21526 0.95134 0.98541 1.00937 1.22132 0.98755 0.94105 1.02232 1.20969 0.91617 0.86808 0.98528 1.43841 1.73077 1.10449 1.01688 1.19041 1.37661 0.91435 0.90396 0.91917 1.25054 0.97011 0.98433 0.98250 1.69914 1.32363 1.10595 1.40096 0.86476 0.80280 0.79118 0.81678 1.20645 1.21484 1.20733 1.19867 0.82829 1.02789 0.86264 1.24908 1.00628 0.86259 0.92647 1.21451 0.91832 1.04077 1.06541 1.21456 0.99683 0.98118 1.03562 1.22147 0.82743 1.00256 1.05502 1.20110 0.96927 0.96951 0.97966 1.83988 1.22545 1.45428 1.56060 0.93074 0.92927 0.93710 0.92699 0.92911 0.92932 0.91720 0.93845 0.94674 0.93212 0.94041 0.85144 0.84399 0.84864 0.91137 0.91319 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.92 5.93 -26.73 -0.16 -2.08 16 3 C -0.13 -2.59 5.54 -26.73 -0.15 -2.74 16 4 C 0.15 3.15 5.67 -4.04 -0.02 3.13 16 5 N -0.57 -14.23 2.43 -174.61 -0.43 -14.65 16 6 C -0.26 -6.90 9.48 -15.06 -0.14 -7.04 16 7 H 0.06 1.71 7.93 -52.49 -0.42 1.29 16 8 C 0.01 0.33 4.94 -17.43 -0.09 0.25 16 9 N -0.89 -24.56 11.34 55.49 0.63 -23.93 16 10 Si 0.90 21.32 29.61 -169.99 -5.03 16.28 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.21 5.04 5.83 -5.19 -0.03 5.01 16 15 C 0.01 0.20 6.90 -35.62 -0.25 -0.05 16 16 C -0.22 -4.84 10.81 -39.70 -0.43 -5.27 16 17 C -0.21 -3.98 10.81 -39.70 -0.43 -4.41 16 18 C -0.06 -1.04 7.32 -35.63 -0.26 -1.30 16 19 C -0.06 -0.80 10.42 36.00 0.37 -0.42 16 20 O -0.18 -3.91 10.65 5.71 0.06 -3.85 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.04 0.92 8.04 -51.93 -0.42 0.51 16 29 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.13 3.43 5.33 -51.93 -0.28 3.15 16 33 H 0.14 3.12 8.06 -52.49 -0.42 2.69 16 34 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -28.63 312.20 -7.43 -36.07 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.16 Total: 1.99 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.21 Total: -16.61 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.20 Total: -38.58 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: 0.06 Total: -3.85 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.63 -7.43 -36.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203297745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.784 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds