Wall clock time and date at job start Sun Mar 29 2020 22:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46816 * 2 1 4 4 H 1.08994 * 109.47079 * 55.95241 * 3 2 1 5 5 C 1.50695 * 109.47094 * 175.95114 * 3 2 1 6 6 H 1.08004 * 119.99976 * 119.99392 * 5 3 2 7 7 C 1.37880 * 120.00448 * 300.00363 * 5 3 2 8 8 N 1.31515 * 119.99484 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00237 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47406 * 59.99707 * 9 7 5 11 11 H 1.48504 * 109.47259 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47146 * 299.99511 * 9 7 5 13 13 N 1.46894 * 109.46957 * 295.95240 * 3 2 1 14 14 C 1.46872 * 110.99806 * 299.76323 * 13 3 2 15 15 C 1.53891 * 109.02414 * 178.71496 * 14 13 3 16 16 H 1.08997 * 113.16927 * 188.76299 * 15 14 13 17 17 C 1.54251 * 107.27401 * 313.56148 * 15 14 13 18 18 C 1.54112 * 105.63097 * 86.63169 * 17 15 14 19 19 C 1.54702 * 105.58585 * 359.80924 * 18 17 15 20 20 H 1.08996 * 112.68684 * 148.43204 * 19 18 17 21 21 C 1.47618 * 111.14733 * 174.14709 * 13 3 2 22 22 C 1.52869 * 103.64391 * 26.27946 * 19 18 17 23 23 O 1.20761 * 129.11310 * 137.46785 * 22 19 18 24 24 H 1.08995 * 109.47147 * 65.10110 * 1 2 3 25 25 H 1.09006 * 109.46627 * 185.09469 * 1 2 3 26 26 H 1.08996 * 109.47527 * 305.09454 * 1 2 3 27 27 H 1.08991 * 109.47821 * 239.99749 * 2 1 3 28 28 H 1.09003 * 109.47313 * 119.99329 * 2 1 3 29 29 H 0.97003 * 119.99930 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.55013 * 58.85326 * 14 13 3 31 31 H 1.08998 * 109.54445 * 298.57560 * 14 13 3 32 32 H 1.09001 * 110.36366 * 327.50493 * 17 15 14 33 33 H 1.08998 * 110.11292 * 205.62237 * 17 15 14 34 34 H 1.09004 * 110.22592 * 240.77945 * 18 17 15 35 35 H 1.09000 * 110.29753 * 118.87594 * 18 17 15 36 36 H 1.09000 * 109.45514 * 61.40471 * 21 13 3 37 37 H 1.08998 * 109.73547 * 301.06693 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6186 1.9769 0.8514 5 6 3.5436 1.4438 0.1003 6 1 4.1366 1.8927 -0.6828 7 6 4.1622 0.8718 1.1917 8 7 3.4400 0.3256 2.1454 9 14 6.0261 0.8728 1.3156 10 1 6.5215 2.2727 1.3153 11 1 6.4388 0.2025 2.5749 12 1 6.5997 0.1444 0.1557 13 7 1.6317 2.1062 -1.2453 14 6 2.1870 1.4153 -2.4163 15 6 1.7061 2.1268 -3.6933 16 1 1.9523 1.5835 -4.6056 17 6 0.1907 2.3699 -3.5391 18 6 0.0593 3.7108 -2.7908 19 6 1.5085 4.1888 -2.5369 20 1 1.5986 5.2750 -2.5350 21 6 1.9834 3.5397 -1.2249 22 6 2.3073 3.5321 -3.6627 23 8 3.1810 4.0020 -4.3513 24 1 -0.3633 0.4326 -0.9321 25 1 -0.3633 -1.0237 0.0913 26 1 -0.3634 0.5908 0.8408 27 1 1.8934 -0.5138 -0.8898 28 1 1.8934 -0.5137 0.8901 29 1 3.8752 -0.0765 2.9135 30 1 1.8455 0.3803 -2.4251 31 1 3.2758 1.4411 -2.3726 32 1 -0.2650 1.5680 -2.9582 33 1 -0.2797 2.4383 -4.5200 34 1 -0.4606 3.5645 -1.8440 35 1 -0.4745 4.4359 -3.4051 36 1 3.0644 3.6471 -1.1354 37 1 1.4960 4.0263 -0.3800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:39 Heat of formation + Delta-G solvation = -36.973051 kcal Electronic energy + Delta-G solvation = -18169.702402 eV Core-core repulsion = 15525.615262 eV Total energy + Delta-G solvation = -2644.087140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43134 -37.45984 -35.30375 -32.21699 -31.33947 -30.74081 -27.48873 -26.09165 -24.07790 -23.34847 -21.79181 -20.14160 -19.23048 -18.22355 -16.64144 -16.09325 -15.13658 -14.68372 -14.52302 -14.19428 -13.77225 -13.39326 -12.97035 -12.60898 -12.55269 -12.19367 -11.97828 -11.64318 -11.43471 -11.22900 -11.10075 -10.87687 -10.68301 -10.57918 -10.47082 -9.98428 -9.94352 -9.72619 -9.52706 -9.17526 -8.77723 -8.41336 -7.22970 -6.04777 -4.18535 2.24751 3.25446 3.30523 3.34319 4.35678 4.40072 4.76351 4.79001 5.15802 5.19398 5.22283 5.40438 5.53702 5.80549 5.82657 5.92016 5.99055 6.22439 6.24603 6.33131 6.35356 6.39641 6.47982 6.58373 6.60863 6.62216 6.70553 7.02703 7.12583 7.24418 7.52946 7.69271 7.75885 7.90100 8.07366 8.19741 8.37047 8.90106 9.49675 10.94252 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.009615 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.182487 B = 2911.381218 C = 3551.289973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.217 3.783 4 H 0.042 0.958 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.071 3.929 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.532 5.532 14 C 0.074 3.926 15 C -0.154 4.154 16 H 0.094 0.906 17 C -0.096 4.096 18 C -0.096 4.096 19 C -0.153 4.153 20 H 0.095 0.905 21 C 0.077 3.923 22 C 0.372 3.628 23 O -0.452 6.452 24 H 0.046 0.954 25 H 0.025 0.975 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.262 0.738 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 2.832 -7.069 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.060 0.940 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.257 5.257 14 C -0.054 4.054 15 C -0.173 4.173 16 H 0.113 0.887 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.172 4.172 20 H 0.113 0.887 21 C -0.052 4.052 22 C 0.247 3.753 23 O -0.324 6.324 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.978 2.943 -7.257 10.489 hybrid contribution 2.060 -0.011 0.266 2.077 sum -4.918 2.932 -6.992 9.037 Atomic orbital electron populations 1.21710 0.98708 0.98466 1.00558 1.21635 0.92305 0.99018 1.02144 1.19258 0.92890 0.91098 0.85613 0.94027 1.21676 0.92792 1.38285 1.05954 0.92815 1.24873 0.97853 0.94873 0.95552 1.69853 1.35006 1.37783 1.09513 0.86757 0.86194 0.78300 0.77392 1.20347 1.21169 1.20317 1.62392 1.58786 1.00577 1.03951 1.22018 0.98024 0.97909 0.87471 1.23122 0.97810 0.96023 1.00389 0.88746 1.21910 0.93405 0.98801 0.99252 1.21977 0.94113 0.95897 1.01333 1.23174 0.97231 1.00303 0.96529 0.88669 1.22063 0.99188 0.90162 0.93793 1.25799 0.78740 0.90611 0.80160 1.90347 1.26457 1.72897 1.42719 0.93514 0.95591 0.94077 0.94783 0.88884 0.92758 0.89689 0.93991 0.89606 0.92881 0.89685 0.92816 0.93985 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.73 37.16 0.36 -2.18 16 2 C -0.11 -2.48 5.01 -26.73 -0.13 -2.61 16 3 C 0.22 4.96 1.76 -68.87 -0.12 4.84 16 4 H 0.04 1.06 8.13 -51.93 -0.42 0.64 16 5 C -0.55 -14.08 7.10 -34.44 -0.24 -14.33 16 6 H 0.05 1.42 5.94 -52.48 -0.31 1.11 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.00 11.30 55.43 0.63 -23.38 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 N -0.53 -10.09 2.99 -226.31 -0.68 -10.77 16 14 C 0.07 1.36 4.21 -3.38 -0.01 1.34 16 15 C -0.15 -2.37 4.12 -89.56 -0.37 -2.74 16 16 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 17 C -0.10 -1.27 5.94 -25.50 -0.15 -1.42 16 18 C -0.10 -1.25 5.96 -25.26 -0.15 -1.40 16 19 C -0.15 -2.33 4.14 -89.33 -0.37 -2.70 16 20 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 21 C 0.08 1.38 4.69 -2.97 -0.01 1.37 16 22 C 0.37 6.40 7.00 -26.86 -0.19 6.21 16 23 O -0.45 -9.00 17.99 6.00 0.11 -8.89 16 24 H 0.05 0.80 7.59 -51.93 -0.39 0.41 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.73 6.18 -51.93 -0.32 0.41 16 28 H 0.09 2.34 5.97 -51.93 -0.31 2.03 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.08 1.53 6.17 -51.93 -0.32 1.21 16 31 H 0.04 0.88 6.49 -51.93 -0.34 0.55 16 32 H 0.09 1.17 7.50 -51.93 -0.39 0.78 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.15 7.80 -51.93 -0.40 0.74 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.87 6.90 -51.93 -0.36 0.51 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 282.06 15.07 4.25 4.25 Total: -1.00 -27.09 282.06 -7.87 -34.96 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.66 Total: -0.23 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.49 Total: -11.82 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.05 Total: -34.14 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.11 Total: -8.89 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.09 -7.87 -34.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.016 kcal (2) G-P(sol) polarization free energy of solvation -27.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds