Wall clock time and date at job start Sun Mar 29 2020 21:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33123 * 1 3 3 C 1.50690 * 120.00236 * 2 1 4 4 C 1.52997 * 109.47263 * 60.22602 * 3 2 1 5 5 C 1.46953 * 119.99765 * 179.97438 * 2 1 3 6 6 O 1.21663 * 119.99913 * 33.40508 * 5 2 1 7 7 N 1.34768 * 120.00328 * 213.41289 * 5 2 1 8 8 C 1.36814 * 120.00551 * 183.94483 * 7 5 2 9 9 H 1.08003 * 120.00153 * 221.67112 * 8 7 5 10 10 C 1.39079 * 119.99809 * 41.66640 * 8 7 5 11 11 N 1.31346 * 120.00206 * 25.70026 * 10 8 7 12 12 Si 1.86798 * 120.00020 * 205.69890 * 10 8 7 13 13 H 1.48505 * 109.47268 * 60.00011 * 12 10 8 14 14 H 1.48493 * 109.47361 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47270 * 300.00409 * 12 10 8 16 16 C 1.46505 * 119.99904 * 3.66184 * 7 5 2 17 17 C 1.54264 * 110.03421 * 241.59194 * 16 7 5 18 18 C 1.54963 * 104.15749 * 217.13508 * 17 16 7 19 19 C 1.54887 * 102.77875 * 37.88911 * 18 17 16 20 20 C 1.53879 * 110.02985 * 124.37254 * 16 7 5 21 21 H 1.07999 * 119.99947 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.00371 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47490 * 180.22523 * 3 2 1 24 24 H 1.08997 * 109.47153 * 300.22530 * 3 2 1 25 25 H 1.08998 * 109.47266 * 291.74192 * 4 3 2 26 26 H 1.09007 * 109.46991 * 51.74336 * 4 3 2 27 27 H 1.08998 * 109.47435 * 171.74134 * 4 3 2 28 28 H 0.97001 * 120.00264 * 184.97450 * 11 10 8 29 29 H 1.09004 * 110.01167 * 2.98853 * 16 7 5 30 30 H 1.08993 * 110.48614 * 335.78027 * 17 16 7 31 31 H 1.09002 * 110.48559 * 98.43116 * 17 16 7 32 32 H 1.09000 * 110.72150 * 279.57314 * 18 17 16 33 33 H 1.09005 * 110.92348 * 156.30118 * 18 17 16 34 34 H 1.09003 * 110.48955 * 203.40121 * 19 18 17 35 35 H 1.09003 * 110.59537 * 80.81670 * 19 18 17 36 36 H 1.09003 * 110.03162 * 238.57419 * 20 16 7 37 37 H 1.08990 * 110.03310 * 0.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3312 0.0000 0.0000 3 6 2.0847 1.3050 0.0000 4 6 1.7194 2.1048 1.2520 5 6 2.0659 -1.2727 0.0006 6 8 1.6083 -2.2395 -0.5791 7 7 3.2466 -1.3690 0.6433 8 6 3.9693 -2.5287 0.5766 9 1 4.4554 -2.9137 1.4608 10 6 4.0779 -3.2119 -0.6300 11 7 3.9554 -2.5632 -1.7654 12 14 4.3980 -5.0523 -0.6357 13 1 3.2944 -5.7489 0.0730 14 1 4.4712 -5.5377 -2.0371 15 1 5.6835 -5.3333 0.0528 16 6 3.7591 -0.2295 1.4084 17 6 5.1031 0.2428 0.8165 18 6 5.9414 0.6479 2.0553 19 6 5.5484 -0.4254 3.1007 20 6 4.0418 -0.6539 2.8602 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 3.1564 1.1058 -0.0040 24 1 1.8184 1.8783 -0.8879 25 1 0.6812 2.4298 1.1855 26 1 1.8481 1.4776 2.1343 27 1 2.3689 2.9769 1.3285 28 1 3.9589 -3.0495 -2.6047 29 1 3.0364 0.5863 1.3919 30 1 5.5888 -0.5699 0.2766 31 1 4.9509 1.1003 0.1610 32 1 5.6630 1.6436 2.4006 33 1 7.0080 0.6010 1.8358 34 1 5.7216 -0.0552 4.1112 35 1 6.1057 -1.3469 2.9323 36 1 3.4570 -0.0434 3.5483 37 1 3.7981 -1.7076 2.9954 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263738407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:36 Heat of formation + Delta-G solvation = 2.987315 kcal Electronic energy + Delta-G solvation = -18254.897850 eV Core-core repulsion = 15612.543522 eV Total energy + Delta-G solvation = -2642.354329 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37942 -36.70440 -34.99041 -33.30647 -31.32976 -29.54517 -28.07110 -26.75394 -25.24949 -23.36585 -21.20221 -20.05336 -19.50396 -18.28883 -16.27641 -15.75273 -15.44764 -14.74714 -14.33019 -13.71250 -13.57659 -13.42144 -12.87497 -12.73044 -12.23501 -12.07248 -11.69093 -11.34846 -11.15968 -11.06159 -10.76467 -10.70550 -10.55138 -10.47016 -10.41961 -10.20098 -10.11507 -9.94965 -9.45195 -8.64240 -8.55544 -7.99185 -7.10016 -6.10633 -3.76225 2.47179 3.36058 3.43302 3.49129 4.36305 4.62647 4.97800 5.19975 5.28409 5.32276 5.38353 5.45172 5.56889 5.64814 5.89432 5.93141 6.04918 6.10871 6.14387 6.17429 6.26188 6.27697 6.32730 6.44276 6.46739 6.53986 6.57886 6.68575 6.84445 7.00925 7.10589 7.23768 7.35249 7.68965 8.33111 9.11030 9.26473 9.72942 10.37073 10.96816 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.012749 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.832945 B = 2195.793213 C = 3163.435897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C -0.112 4.112 4 C -0.150 4.150 5 C 0.504 3.496 6 O -0.549 6.549 7 N -0.434 5.434 8 C -0.343 4.343 9 H 0.079 0.921 10 C 0.080 3.920 11 N -0.828 5.828 12 Si 0.900 3.100 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.279 1.279 16 C 0.090 3.910 17 C -0.128 4.128 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.131 4.131 21 H 0.096 0.904 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.265 0.735 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 9.074 6.852 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.149 4.149 4 C -0.207 4.207 5 C 0.293 3.707 6 O -0.430 6.430 7 N -0.154 5.154 8 C -0.469 4.469 9 H 0.096 0.904 10 C -0.131 4.131 11 N -0.461 5.461 12 Si 0.727 3.273 13 H -0.200 1.200 14 H -0.214 1.214 15 H -0.205 1.205 16 C -0.014 4.014 17 C -0.167 4.167 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.170 4.170 21 H 0.114 0.886 22 H 0.120 0.880 23 H 0.115 0.885 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.214 8.564 6.350 10.664 hybrid contribution 0.141 -0.854 -0.200 0.888 sum 0.356 7.710 6.150 9.869 Atomic orbital electron populations 1.24063 0.94719 1.01338 1.00307 1.22029 0.95685 0.95369 1.00674 1.21102 1.02420 0.93435 0.97933 1.21918 1.01230 0.99569 0.97978 1.17986 0.81406 0.87225 0.84102 1.90604 1.68011 1.38784 1.45607 1.43272 1.15431 1.11105 1.45581 1.18772 1.33006 1.00680 0.94453 0.90363 1.25111 0.94288 0.98988 0.94701 1.69896 1.42390 1.36127 0.97690 0.86479 0.78216 0.85589 0.77015 1.20013 1.21371 1.20452 1.22717 0.96396 0.91391 0.90887 1.22717 0.96319 1.00939 0.96678 1.22442 0.99243 0.97871 0.96441 1.22263 0.96676 0.99004 0.97543 1.22450 0.95509 1.02258 0.96761 0.88581 0.87968 0.88549 0.91579 0.92684 0.91961 0.92521 0.92517 0.87351 0.89122 0.92857 0.92508 0.92379 0.92978 0.91649 0.93059 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 13.50 28.95 0.39 -2.67 16 2 C -0.13 -2.80 4.94 -102.88 -0.51 -3.31 16 3 C -0.11 -1.91 5.22 -27.89 -0.15 -2.05 16 4 C -0.15 -1.99 8.83 37.16 0.33 -1.66 16 5 C 0.50 13.29 6.62 -12.73 -0.08 13.20 16 6 O -0.55 -16.87 14.69 5.22 0.08 -16.79 16 7 N -0.43 -10.86 2.46 -107.92 -0.27 -11.13 16 8 C -0.34 -9.36 7.45 -15.02 -0.11 -9.47 16 9 H 0.08 2.07 7.02 -52.48 -0.37 1.70 16 10 C 0.08 2.27 4.12 -17.45 -0.07 2.20 16 11 N -0.83 -24.66 12.21 55.50 0.68 -23.99 16 12 Si 0.90 22.32 29.63 -169.99 -5.04 17.29 16 13 H -0.27 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 C 0.09 1.78 2.26 -66.81 -0.15 1.63 16 17 C -0.13 -2.41 6.02 -25.03 -0.15 -2.56 16 18 C -0.12 -1.84 6.91 -24.70 -0.17 -2.01 16 19 C -0.12 -1.82 6.83 -25.08 -0.17 -1.99 16 20 C -0.13 -2.32 6.18 -25.61 -0.16 -2.48 16 21 H 0.10 1.41 7.63 -52.49 -0.40 1.01 16 22 H 0.10 2.01 7.85 -52.49 -0.41 1.60 16 23 H 0.10 1.77 3.54 -51.93 -0.18 1.59 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.65 7.64 -51.93 -0.40 0.26 16 26 H 0.06 0.86 6.90 -51.92 -0.36 0.50 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 29 H 0.11 1.94 1.56 -51.93 -0.08 1.86 16 30 H 0.09 2.05 7.17 -51.93 -0.37 1.68 16 31 H 0.05 0.94 6.85 -51.93 -0.36 0.58 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.48 6.74 -51.93 -0.35 1.13 16 LS Contribution 287.39 15.07 4.33 4.33 Total: -1.00 -32.25 287.39 -6.59 -38.84 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.37 Total: 2.62 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.00 Total: -11.18 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.41 Total: -35.11 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.08 Total: -16.79 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.04 Total: 17.29 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.25 -6.59 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263738407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.828 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds