Wall clock time and date at job start Sun Mar 29 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33123 * 1 3 3 C 1.50690 * 120.00236 * 2 1 4 4 C 1.52997 * 109.47263 * 60.22602 * 3 2 1 5 5 C 1.46953 * 119.99765 * 179.97438 * 2 1 3 6 6 O 1.21663 * 119.99913 * 33.40508 * 5 2 1 7 7 N 1.34768 * 120.00328 * 213.41289 * 5 2 1 8 8 C 1.36814 * 120.00551 * 183.94483 * 7 5 2 9 9 H 1.08003 * 120.00153 * 221.67112 * 8 7 5 10 10 C 1.39079 * 119.99809 * 41.66640 * 8 7 5 11 11 N 1.31346 * 120.00206 * 25.70026 * 10 8 7 12 12 Si 1.86798 * 120.00020 * 205.69890 * 10 8 7 13 13 H 1.48505 * 109.47268 * 60.00011 * 12 10 8 14 14 H 1.48493 * 109.47361 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47270 * 300.00409 * 12 10 8 16 16 C 1.46505 * 119.99904 * 3.66184 * 7 5 2 17 17 C 1.54264 * 110.03421 * 241.59194 * 16 7 5 18 18 C 1.54963 * 104.15749 * 217.13508 * 17 16 7 19 19 C 1.54887 * 102.77875 * 37.88911 * 18 17 16 20 20 C 1.53879 * 110.02985 * 124.37254 * 16 7 5 21 21 H 1.07999 * 119.99947 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.00371 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47490 * 180.22523 * 3 2 1 24 24 H 1.08997 * 109.47153 * 300.22530 * 3 2 1 25 25 H 1.08998 * 109.47266 * 291.74192 * 4 3 2 26 26 H 1.09007 * 109.46991 * 51.74336 * 4 3 2 27 27 H 1.08998 * 109.47435 * 171.74134 * 4 3 2 28 28 H 0.97001 * 120.00264 * 184.97450 * 11 10 8 29 29 H 1.09004 * 110.01167 * 2.98853 * 16 7 5 30 30 H 1.08993 * 110.48614 * 335.78027 * 17 16 7 31 31 H 1.09002 * 110.48559 * 98.43116 * 17 16 7 32 32 H 1.09000 * 110.72150 * 279.57314 * 18 17 16 33 33 H 1.09005 * 110.92348 * 156.30118 * 18 17 16 34 34 H 1.09003 * 110.48955 * 203.40121 * 19 18 17 35 35 H 1.09003 * 110.59537 * 80.81670 * 19 18 17 36 36 H 1.09003 * 110.03162 * 238.57419 * 20 16 7 37 37 H 1.08990 * 110.03310 * 0.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3312 0.0000 0.0000 3 6 2.0847 1.3050 0.0000 4 6 1.7194 2.1048 1.2520 5 6 2.0659 -1.2727 0.0006 6 8 1.6083 -2.2395 -0.5791 7 7 3.2466 -1.3690 0.6433 8 6 3.9693 -2.5287 0.5766 9 1 4.4554 -2.9137 1.4608 10 6 4.0779 -3.2119 -0.6300 11 7 3.9554 -2.5632 -1.7654 12 14 4.3980 -5.0523 -0.6357 13 1 3.2944 -5.7489 0.0730 14 1 4.4712 -5.5377 -2.0371 15 1 5.6835 -5.3333 0.0528 16 6 3.7591 -0.2295 1.4084 17 6 5.1031 0.2428 0.8165 18 6 5.9414 0.6479 2.0553 19 6 5.5484 -0.4254 3.1007 20 6 4.0418 -0.6539 2.8602 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 3.1564 1.1058 -0.0040 24 1 1.8184 1.8783 -0.8879 25 1 0.6812 2.4298 1.1855 26 1 1.8481 1.4776 2.1343 27 1 2.3689 2.9769 1.3285 28 1 3.9589 -3.0495 -2.6047 29 1 3.0364 0.5863 1.3919 30 1 5.5888 -0.5699 0.2766 31 1 4.9509 1.1003 0.1610 32 1 5.6630 1.6436 2.4006 33 1 7.0080 0.6010 1.8358 34 1 5.7216 -0.0552 4.1112 35 1 6.1057 -1.3469 2.9323 36 1 3.4570 -0.0434 3.5483 37 1 3.7981 -1.7076 2.9954 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263738407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:35 Heat of formation + Delta-G solvation = -17.068723 kcal Electronic energy + Delta-G solvation = -18255.767546 eV Core-core repulsion = 15612.543522 eV Total energy + Delta-G solvation = -2643.224024 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09621 -38.38121 -36.53932 -35.21314 -33.31982 -30.94755 -29.46940 -28.34735 -27.12406 -24.79610 -22.92331 -21.37104 -21.09102 -20.07216 -18.11075 -17.40734 -16.99008 -16.66278 -15.90745 -15.41496 -15.26116 -15.09940 -14.34465 -14.14367 -13.79135 -13.53948 -13.35527 -12.87650 -12.83318 -12.70724 -12.63713 -12.29741 -12.15578 -11.97825 -11.93171 -11.81173 -11.48603 -11.30178 -10.97677 -10.68992 -10.16478 -9.94482 -9.14121 -8.24907 -5.92257 0.88004 1.33084 1.41674 1.45628 2.33429 2.70362 3.17415 3.29347 3.90964 3.95852 4.00368 4.03941 4.28666 4.40157 4.54506 4.65838 4.72226 4.76916 4.83192 4.87400 4.88671 4.97598 5.10020 5.14321 5.17824 5.22185 5.30116 5.41913 5.44075 5.53068 5.57575 5.61937 5.69717 5.85902 6.22379 7.03042 7.24760 7.72249 8.36281 8.81959 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.012749 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.832945 B = 2195.793213 C = 3163.435897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.164 4.164 3 C -0.107 4.107 4 C -0.144 4.144 5 C 0.483 3.517 6 O -0.612 6.612 7 N -0.443 5.443 8 C -0.349 4.349 9 H 0.078 0.922 10 C 0.031 3.969 11 N -0.865 5.865 12 Si 0.953 3.047 13 H -0.286 1.286 14 H -0.288 1.288 15 H -0.255 1.255 16 C 0.080 3.920 17 C -0.128 4.128 18 C -0.110 4.110 19 C -0.114 4.114 20 C -0.131 4.131 21 H 0.146 0.854 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.258 0.742 29 H 0.135 0.865 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 11.783 8.781 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.168 4.168 3 C -0.144 4.144 4 C -0.201 4.201 5 C 0.274 3.726 6 O -0.497 6.497 7 N -0.161 5.161 8 C -0.476 4.476 9 H 0.095 0.905 10 C -0.176 4.176 11 N -0.500 5.500 12 Si 0.778 3.222 13 H -0.212 1.212 14 H -0.214 1.214 15 H -0.180 1.180 16 C -0.022 4.022 17 C -0.166 4.166 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.169 4.169 21 H 0.164 0.836 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.204 11.296 8.324 14.034 hybrid contribution 0.072 -1.666 -0.752 1.830 sum 0.276 9.630 7.572 12.254 Atomic orbital electron populations 1.24354 0.93900 1.02697 0.96561 1.22000 0.96454 0.94579 1.03727 1.21084 1.00677 0.91885 1.00725 1.21899 1.03194 0.99661 0.95322 1.19011 0.81801 0.88732 0.83009 1.90542 1.69648 1.41401 1.48139 1.43521 1.15183 1.12027 1.45416 1.18984 1.32408 1.02125 0.94110 0.90453 1.25880 0.94575 1.02519 0.94635 1.69990 1.45077 1.37101 0.97856 0.85646 0.78553 0.81095 0.76894 1.21230 1.21391 1.17967 1.23119 0.97374 0.90438 0.91305 1.22629 0.96163 0.99572 0.98219 1.22423 0.99158 0.99205 0.93934 1.22256 0.94599 0.98592 0.99688 1.22451 0.97750 1.00794 0.95918 0.83597 0.90027 0.90429 0.90239 0.90634 0.92460 0.89824 0.93293 0.84845 0.93991 0.91934 0.89104 0.91373 0.89473 0.93663 0.89943 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 13.50 66.67 0.90 -3.88 16 2 C -0.16 -6.73 4.94 -18.73 -0.09 -6.82 16 3 C -0.11 -3.36 5.22 29.84 0.16 -3.21 16 4 C -0.14 -3.15 8.83 71.98 0.64 -2.51 16 5 C 0.48 26.27 6.62 86.53 0.57 26.85 16 6 O -0.61 -39.43 14.69 -4.23 -0.06 -39.49 16 7 N -0.44 -22.81 2.46 -613.57 -1.51 -24.32 16 8 C -0.35 -19.85 7.45 84.12 0.63 -19.23 16 9 H 0.08 4.28 7.02 -2.91 -0.02 4.26 16 10 C 0.03 1.81 4.12 84.97 0.35 2.16 16 11 N -0.86 -54.16 12.21 21.69 0.26 -53.90 16 12 Si 0.95 47.63 29.63 68.60 2.03 49.66 16 13 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 14 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 C 0.08 3.12 2.26 45.72 0.10 3.22 16 17 C -0.13 -4.72 6.02 31.69 0.19 -4.53 16 18 C -0.11 -2.98 6.91 31.91 0.22 -2.76 16 19 C -0.11 -3.26 6.83 31.67 0.22 -3.04 16 20 C -0.13 -4.43 6.18 31.32 0.19 -4.23 16 21 H 0.15 3.61 7.63 -2.91 -0.02 3.59 16 22 H 0.08 3.19 7.85 -2.91 -0.02 3.16 16 23 H 0.08 2.74 3.54 -2.39 -0.01 2.73 16 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.07 1.37 7.64 -2.39 -0.02 1.35 16 26 H 0.06 1.32 6.90 -2.38 -0.02 1.31 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.13 4.49 1.56 -2.39 0.00 4.49 16 30 H 0.04 1.96 7.17 -2.39 -0.02 1.94 16 31 H 0.06 2.14 6.85 -2.39 -0.02 2.13 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.04 1.69 6.74 -2.39 -0.02 1.68 16 Total: -1.00 -75.89 287.39 5.85 -70.04 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.05 Total: 16.00 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.07 Total: -17.99 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.25 Total: -78.22 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.06 Total: -39.49 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -75.89 5.85 -70.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263738407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.974 kcal (2) G-P(sol) polarization free energy of solvation -75.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds