Wall clock time and date at job start Sun Mar 29 2020 21:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32995 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 C 1.52994 * 109.46916 * 94.49686 * 3 2 1 5 5 C 1.47104 * 119.99669 * 180.02562 * 2 1 3 6 6 O 1.21611 * 119.99449 * 260.58513 * 5 2 1 7 7 N 1.34767 * 120.00324 * 80.58720 * 5 2 1 8 8 C 1.46928 * 120.63144 * 175.06395 * 7 5 2 9 9 C 1.53192 * 108.89034 * 233.55676 * 8 7 5 10 10 C 1.53079 * 109.29627 * 305.57376 * 9 8 7 11 11 C 1.50701 * 109.44159 * 181.23533 * 10 9 8 12 12 H 1.07998 * 120.00050 * 239.79890 * 11 10 9 13 13 C 1.37874 * 119.99697 * 59.79703 * 11 10 9 14 14 N 1.31518 * 120.00636 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46975 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47173 * 120.00096 * 15 13 11 18 18 H 1.48497 * 109.47102 * 240.00307 * 15 13 11 19 19 C 1.53038 * 109.65515 * 61.15743 * 10 9 8 20 20 C 1.46927 * 120.63288 * 355.08228 * 7 5 2 21 21 H 1.08000 * 119.99923 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.00374 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47089 * 214.49766 * 3 2 1 24 24 H 1.08998 * 109.46809 * 334.49742 * 3 2 1 25 25 H 1.09002 * 109.47227 * 180.02562 * 4 3 2 26 26 H 1.09002 * 109.47307 * 299.99946 * 4 3 2 27 27 H 1.09002 * 109.47105 * 59.99930 * 4 3 2 28 28 H 1.08998 * 109.58251 * 353.41077 * 8 7 5 29 29 H 1.09002 * 109.58852 * 113.69857 * 8 7 5 30 30 H 1.09005 * 109.49738 * 65.38630 * 9 8 7 31 31 H 1.09002 * 109.49666 * 185.48337 * 9 8 7 32 32 H 1.08994 * 109.34792 * 301.12886 * 10 9 8 33 33 H 0.96999 * 120.00375 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.50010 * 178.75109 * 19 10 9 35 35 H 1.09004 * 109.53068 * 58.66591 * 19 10 9 36 36 H 1.09002 * 109.58462 * 246.15924 * 20 7 5 37 37 H 1.08998 * 109.58405 * 6.43928 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.4364 1.6901 1.4380 5 6 2.0654 -1.2740 -0.0006 6 8 2.5186 -1.7148 1.0383 7 7 2.2370 -1.9525 -1.1522 8 6 3.0598 -3.1693 -1.1888 9 6 4.1215 -3.0174 -2.2827 10 6 3.4363 -2.6784 -3.6090 11 6 4.4753 -2.5581 -4.6939 12 1 4.5872 -1.6295 -5.2339 13 6 5.2830 -3.6335 -4.9971 14 7 5.1465 -4.7645 -4.3399 15 14 6.5704 -3.4848 -6.3425 16 1 6.5219 -2.1197 -6.9252 17 1 7.9176 -3.7296 -5.7677 18 1 6.2955 -4.4865 -7.4037 19 6 2.6831 -1.3529 -3.4752 20 6 1.6052 -1.4895 -2.3953 21 1 -0.5400 0.9353 0.0004 22 1 -0.5401 -0.9353 -0.0004 23 1 2.9987 1.1962 -0.5821 24 1 1.4619 2.0835 -0.4425 25 1 2.9811 2.6343 1.4381 26 1 1.5213 1.7990 2.0201 27 1 3.0580 0.9117 1.8805 28 1 3.5469 -3.3100 -0.2239 29 1 2.4290 -4.0306 -1.4088 30 1 4.8081 -2.2144 -2.0144 31 1 4.6748 -3.9510 -2.3848 32 1 2.7336 -3.4711 -3.8654 33 1 5.7145 -5.5213 -4.5535 34 1 2.2147 -1.1029 -4.4271 35 1 3.3810 -0.5639 -3.1948 36 1 0.8562 -2.2135 -2.7161 37 1 1.1303 -0.5232 -2.2257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349412480.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:21 Heat of formation + Delta-G solvation = -35.900056 kcal Electronic energy + Delta-G solvation = -17350.216524 eV Core-core repulsion = 14706.175912 eV Total energy + Delta-G solvation = -2644.040612 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.80280 -36.88652 -35.28309 -33.48604 -31.14591 -30.59899 -29.73599 -26.30193 -24.11596 -23.24439 -22.50067 -21.31886 -19.27366 -17.89177 -16.60266 -16.12106 -15.65407 -15.05861 -14.56167 -14.15786 -13.89911 -13.34840 -13.13580 -12.90962 -12.75056 -12.55698 -12.20728 -12.07702 -11.78732 -11.32004 -11.18911 -10.96461 -10.94382 -10.63588 -10.42141 -10.11118 -9.58596 -9.50504 -9.37822 -9.02434 -8.91046 -8.38529 -8.00512 -6.03066 -4.09857 1.90158 2.92757 3.27037 3.35642 3.38794 3.55246 4.40339 4.71165 4.86542 5.19900 5.26734 5.35500 5.47136 5.55857 5.65264 5.78930 5.86364 5.92457 5.96086 6.04539 6.22631 6.25547 6.36981 6.42580 6.45058 6.54080 6.62978 6.84473 6.95544 7.18360 7.32998 7.68576 7.88657 7.92835 8.05402 8.38894 8.53634 8.93861 9.55485 11.02428 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038819 B = 0.005997 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.114051 B = 4667.637560 C = 4797.386976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.139 4.139 3 C -0.078 4.078 4 C -0.146 4.146 5 C 0.547 3.453 6 O -0.552 6.552 7 N -0.594 5.594 8 C 0.108 3.892 9 C -0.122 4.122 10 C 0.048 3.952 11 C -0.512 4.512 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.890 3.110 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.123 4.123 20 C 0.106 3.894 21 H 0.111 0.889 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.104 0.896 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.076 9.237 5.733 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C -0.116 4.116 4 C -0.203 4.203 5 C 0.335 3.665 6 O -0.431 6.431 7 N -0.325 5.325 8 C -0.013 4.013 9 C -0.161 4.161 10 C 0.029 3.971 11 C -0.551 4.551 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.161 4.161 20 C -0.017 4.017 21 H 0.129 0.871 22 H 0.120 0.880 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.748 8.801 6.265 13.294 hybrid contribution 0.693 -0.049 -0.847 1.095 sum -7.055 8.752 5.418 12.479 Atomic orbital electron populations 1.24214 0.94073 1.02515 0.98908 1.21678 0.95722 0.94926 1.01850 1.20494 1.00217 0.92550 0.98352 1.21722 1.01726 1.01327 0.95542 1.18569 0.79956 0.84335 0.83674 1.90756 1.51158 1.69650 1.31572 1.48269 1.49086 1.27081 1.08088 1.21913 0.93531 0.84662 1.01227 1.22025 0.96392 1.03806 0.93830 1.18654 0.94449 0.91059 0.92929 1.21220 1.17785 0.98139 1.17910 0.92653 1.24971 0.97328 0.95337 0.96361 1.69853 1.39677 1.02502 1.40920 0.86563 0.81574 0.78055 0.81962 1.19846 1.21053 1.21040 1.22002 0.96728 1.01359 0.96037 1.21882 0.96079 0.99099 0.84635 0.87113 0.88022 0.90795 0.90616 0.92481 0.92710 0.91866 0.90675 0.92275 0.94369 0.87751 0.95488 0.92988 0.92066 0.92888 0.91922 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 13.32 28.91 0.39 -1.44 16 2 C -0.14 -1.95 3.32 -102.84 -0.34 -2.29 16 3 C -0.08 -0.95 6.09 -27.89 -0.17 -1.12 16 4 C -0.15 -1.68 9.89 37.15 0.37 -1.31 16 5 C 0.55 9.99 7.08 -12.67 -0.09 9.90 16 6 O -0.55 -11.89 16.54 5.27 0.09 -11.81 16 7 N -0.59 -10.99 2.97 -174.16 -0.52 -11.50 16 8 C 0.11 2.21 6.41 -3.71 -0.02 2.18 16 9 C -0.12 -2.84 5.16 -26.59 -0.14 -2.97 16 10 C 0.05 1.13 2.06 -91.71 -0.19 0.94 16 11 C -0.51 -13.59 8.56 -34.44 -0.29 -13.89 16 12 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 14 N -0.89 -24.78 11.30 55.43 0.63 -24.16 16 15 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 20 C 0.11 1.74 6.28 -3.71 -0.02 1.72 16 21 H 0.11 0.96 8.02 -52.49 -0.42 0.54 16 22 H 0.10 1.16 8.05 -52.49 -0.42 0.74 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 0.73 8.02 -51.93 -0.42 0.31 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.57 7.03 -51.93 -0.37 1.20 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 2.70 6.03 -51.93 -0.31 2.39 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.01 5.87 -51.93 -0.31 0.71 16 LS Contribution 300.94 15.07 4.54 4.54 Total: -1.00 -29.50 300.94 -7.05 -36.55 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.01 Total: -0.24 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -0.75 Total: -9.24 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.11 Total: -35.66 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.50 -7.05 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349412480.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.654 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds