Wall clock time and date at job start Sun Mar 29 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46851 * 172.82101 * 3 2 1 5 5 N 1.46911 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.44250 * 110.99812 * 293.95233 * 5 4 3 7 7 C 1.54246 * 108.64092 * 219.84891 * 6 5 4 8 8 C 1.46136 * 111.90203 * 281.38083 * 7 6 5 9 9 N 1.48108 * 112.19147 * 60.87002 * 8 7 6 10 10 C 1.46894 * 111.00325 * 156.48879 * 9 8 7 11 11 C 1.50701 * 109.47264 * 66.03971 * 10 9 8 12 12 H 1.08001 * 120.00098 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99843 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99847 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00056 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47177 * 89.99890 * 15 13 11 17 17 H 1.48499 * 109.47006 * 209.99993 * 15 13 11 18 18 H 1.48498 * 109.47222 * 329.99655 * 15 13 11 19 19 C 1.44265 * 109.97523 * 279.71706 * 9 8 7 20 20 C 1.48194 * 110.99671 * 62.19182 * 5 4 3 21 21 H 1.09004 * 109.47019 * 52.81861 * 3 2 1 22 22 H 1.08996 * 109.46884 * 292.82074 * 3 2 1 23 23 H 1.08996 * 109.47683 * 60.00320 * 4 3 2 24 24 H 1.09005 * 109.47228 * 299.99706 * 4 3 2 25 25 H 1.09001 * 109.60634 * 100.09627 * 6 5 4 26 26 H 1.08998 * 109.61066 * 339.59715 * 6 5 4 27 27 H 1.08999 * 108.99103 * 160.75996 * 7 6 5 28 28 H 1.08996 * 108.99661 * 42.00255 * 7 6 5 29 29 H 1.09011 * 108.93841 * 181.56490 * 8 7 6 30 30 H 1.09000 * 108.94033 * 300.16670 * 8 7 6 31 31 H 1.08994 * 109.47152 * 186.04283 * 10 9 8 32 32 H 1.09004 * 109.47146 * 306.04471 * 10 9 8 33 33 H 0.96995 * 120.00081 * 180.02562 * 14 13 11 34 34 H 1.08993 * 108.86680 * 333.10661 * 19 9 8 35 35 H 1.08994 * 108.78253 * 214.63728 * 19 9 8 36 36 H 1.09003 * 108.82684 * 312.52933 * 20 5 4 37 37 H 1.09002 * 108.82807 * 70.94640 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1173 1.4321 -0.1803 5 7 4.5864 1.4327 -0.1809 6 6 5.1040 1.0440 1.1083 7 6 6.3281 1.9243 1.4339 8 6 7.5262 1.4744 0.7285 9 7 7.3622 1.5270 -0.7426 10 6 8.6649 1.6221 -1.4146 11 6 9.4422 0.3514 -1.1856 12 1 9.0114 -0.4471 -0.5998 13 6 10.7031 0.2080 -1.7248 14 7 11.3813 -0.9010 -1.5254 15 14 11.4481 1.5888 -2.7386 16 1 12.2041 2.5049 -1.8473 17 1 12.3673 1.0164 -3.7548 18 1 10.3651 2.3427 -3.4196 19 6 6.6286 0.3714 -1.1982 20 6 5.1173 0.6397 -1.3147 21 1 2.9717 -0.6203 -0.8188 22 1 2.9715 -0.3977 0.9472 23 1 2.7538 2.0530 0.6385 24 1 2.7538 1.8305 -1.1276 25 1 5.4036 -0.0037 1.0814 26 1 4.3370 1.1882 1.8691 27 1 6.5144 1.8898 2.5073 28 1 6.1120 2.9530 1.1456 29 1 8.3645 2.1102 1.0138 30 1 7.7462 0.4484 1.0235 31 1 8.5124 1.7669 -2.4840 32 1 9.2220 2.4668 -1.0092 33 1 12.2684 -1.0019 -1.9044 34 1 6.7882 -0.4468 -0.4961 35 1 7.0105 0.0761 -2.1755 36 1 4.5926 -0.3150 -1.3525 37 1 4.9283 1.1812 -2.2417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331876310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:40 Heat of formation + Delta-G solvation = 42.758206 kcal Electronic energy + Delta-G solvation = -17121.472348 eV Core-core repulsion = 14513.135366 eV Total energy + Delta-G solvation = -2608.336983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.28263 -37.13504 -35.90877 -33.01792 -32.08251 -31.06802 -28.57096 -26.19580 -25.34424 -23.19008 -22.03180 -19.83023 -19.23421 -17.79992 -16.88131 -16.07174 -15.68335 -15.12534 -14.60069 -14.30786 -14.03169 -13.65064 -13.26475 -13.15433 -12.90868 -12.57002 -12.44190 -12.21090 -12.01879 -11.92065 -11.33581 -11.00947 -10.93769 -10.84659 -10.38694 -10.31221 -10.23251 -9.97894 -9.89749 -9.47360 -8.62395 -7.99941 -7.19910 -6.13633 -4.13739 2.57389 2.60112 3.26431 3.34419 3.38417 3.69407 4.13066 4.37694 4.74946 4.83313 4.84314 5.16972 5.19483 5.21371 5.41342 5.46837 5.59996 5.71636 5.75849 5.80305 5.93507 6.15895 6.24237 6.30008 6.46646 6.59906 6.72847 6.86053 6.96570 7.11173 7.22403 7.38414 7.44764 7.55329 8.09257 8.20651 8.42024 8.88818 9.49972 10.99391 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045892 B = 0.005163 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.981799 B = 5421.660255 C = 5570.418589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.214 3.786 3 C -0.073 4.073 4 C 0.067 3.933 5 N -0.529 5.529 6 C 0.063 3.937 7 C -0.108 4.108 8 C 0.064 3.936 9 N -0.516 5.516 10 C 0.154 3.846 11 C -0.552 4.552 12 H 0.072 0.928 13 C 0.072 3.928 14 N -0.900 5.900 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.263 1.263 19 C 0.066 3.934 20 C 0.064 3.936 21 H 0.112 0.888 22 H 0.107 0.893 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.219 3.486 3.558 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.104 4.104 3 C -0.115 4.115 4 C -0.063 4.063 5 N -0.252 5.252 6 C -0.065 4.065 7 C -0.147 4.147 8 C -0.064 4.064 9 N -0.238 5.238 10 C 0.028 3.972 11 C -0.591 4.591 12 H 0.090 0.910 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.706 3.294 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.064 4.064 20 C -0.063 4.063 21 H 0.130 0.870 22 H 0.125 0.875 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.825 4.280 3.317 14.848 hybrid contribution 1.338 -1.104 -0.209 1.747 sum -12.487 3.177 3.108 13.254 Atomic orbital electron populations 1.81224 1.13107 1.08884 1.09140 1.29167 0.95178 0.93065 0.92965 1.20282 0.81913 1.03510 1.05834 1.22264 0.88456 0.92011 1.03605 1.60644 1.03679 1.57032 1.03842 1.21842 0.97150 0.97834 0.89663 1.20626 0.94769 1.01068 0.98228 1.20847 0.96611 0.99890 0.89047 1.61813 1.19098 1.38948 1.03984 1.20326 0.85940 0.96502 0.94471 1.21771 1.01244 1.01931 1.34145 0.90954 1.24988 0.96937 0.95466 0.95705 1.69925 1.12552 1.26036 1.45287 0.86797 0.79522 0.82589 0.80536 1.20219 1.21371 1.18709 1.21681 0.91056 0.92192 1.01441 1.22706 0.95993 0.94384 0.93221 0.87032 0.87528 0.90074 0.90021 0.94157 0.91901 0.92463 0.90812 0.91960 0.95061 0.95270 0.95830 0.92693 0.95020 0.90508 0.94918 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.82 18.54 42.15 0.78 -5.04 16 2 C 0.21 2.15 15.43 -20.76 -0.32 1.83 16 3 C -0.07 -0.55 5.22 -29.52 -0.15 -0.70 16 4 C 0.07 0.58 5.08 -3.82 -0.02 0.57 16 5 N -0.53 -6.25 4.32 -234.26 -1.01 -7.26 16 6 C 0.06 0.74 4.37 -4.59 -0.02 0.72 16 7 C -0.11 -1.49 5.66 -29.34 -0.17 -1.66 16 8 C 0.06 1.14 4.40 -6.42 -0.03 1.11 16 9 N -0.52 -10.00 4.62 -240.68 -1.11 -11.11 16 10 C 0.15 3.55 3.92 -4.98 -0.02 3.53 16 11 C -0.55 -14.73 8.33 -34.44 -0.29 -15.02 16 12 H 0.07 2.10 6.78 -52.49 -0.36 1.74 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 15 Si 0.88 20.87 27.47 -169.99 -4.67 16.21 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 19 C 0.07 1.16 4.08 -4.75 -0.02 1.14 16 20 C 0.06 0.84 5.64 -2.62 -0.01 0.82 16 21 H 0.11 0.77 6.20 -51.93 -0.32 0.45 16 22 H 0.11 0.70 7.28 -51.93 -0.38 0.32 16 23 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.50 6.96 -51.93 -0.36 0.13 16 26 H 0.06 0.58 7.31 -51.93 -0.38 0.21 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 29 H 0.06 1.17 7.71 -51.92 -0.40 0.77 16 30 H 0.03 0.61 6.89 -51.93 -0.36 0.25 16 31 H 0.03 0.69 7.17 -51.93 -0.37 0.31 16 32 H 0.02 0.55 7.33 -51.93 -0.38 0.17 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.03 0.59 6.20 -51.93 -0.32 0.26 16 35 H 0.08 1.48 7.36 -51.93 -0.38 1.09 16 36 H 0.03 0.35 5.80 -51.93 -0.30 0.05 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 289.00 15.07 4.36 4.36 Total: -1.00 -30.39 289.00 -7.61 -38.00 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.58 Total: -3.41 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.15 Total: -5.77 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.57 Total: -49.38 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.39 -7.61 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331876310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.757 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds