Wall clock time and date at job start Sun Mar 29 2020 22:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46851 * 172.82101 * 3 2 1 5 5 N 1.46911 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.44250 * 110.99812 * 293.95233 * 5 4 3 7 7 C 1.54246 * 108.64092 * 219.84891 * 6 5 4 8 8 C 1.46136 * 111.90203 * 281.38083 * 7 6 5 9 9 N 1.48108 * 112.19147 * 60.87002 * 8 7 6 10 10 C 1.46894 * 111.00325 * 156.48879 * 9 8 7 11 11 C 1.50701 * 109.47264 * 66.03971 * 10 9 8 12 12 H 1.08001 * 120.00098 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99843 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99847 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00056 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47177 * 89.99890 * 15 13 11 17 17 H 1.48499 * 109.47006 * 209.99993 * 15 13 11 18 18 H 1.48498 * 109.47222 * 329.99655 * 15 13 11 19 19 C 1.44265 * 109.97523 * 279.71706 * 9 8 7 20 20 C 1.48194 * 110.99671 * 62.19182 * 5 4 3 21 21 H 1.09004 * 109.47019 * 52.81861 * 3 2 1 22 22 H 1.08996 * 109.46884 * 292.82074 * 3 2 1 23 23 H 1.08996 * 109.47683 * 60.00320 * 4 3 2 24 24 H 1.09005 * 109.47228 * 299.99706 * 4 3 2 25 25 H 1.09001 * 109.60634 * 100.09627 * 6 5 4 26 26 H 1.08998 * 109.61066 * 339.59715 * 6 5 4 27 27 H 1.08999 * 108.99103 * 160.75996 * 7 6 5 28 28 H 1.08996 * 108.99661 * 42.00255 * 7 6 5 29 29 H 1.09011 * 108.93841 * 181.56490 * 8 7 6 30 30 H 1.09000 * 108.94033 * 300.16670 * 8 7 6 31 31 H 1.08994 * 109.47152 * 186.04283 * 10 9 8 32 32 H 1.09004 * 109.47146 * 306.04471 * 10 9 8 33 33 H 0.96995 * 120.00081 * 180.02562 * 14 13 11 34 34 H 1.08993 * 108.86680 * 333.10661 * 19 9 8 35 35 H 1.08994 * 108.78253 * 214.63728 * 19 9 8 36 36 H 1.09003 * 108.82684 * 312.52933 * 20 5 4 37 37 H 1.09002 * 108.82807 * 70.94640 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1173 1.4321 -0.1803 5 7 4.5864 1.4327 -0.1809 6 6 5.1040 1.0440 1.1083 7 6 6.3281 1.9243 1.4339 8 6 7.5262 1.4744 0.7285 9 7 7.3622 1.5270 -0.7426 10 6 8.6649 1.6221 -1.4146 11 6 9.4422 0.3514 -1.1856 12 1 9.0114 -0.4471 -0.5998 13 6 10.7031 0.2080 -1.7248 14 7 11.3813 -0.9010 -1.5254 15 14 11.4481 1.5888 -2.7386 16 1 12.2041 2.5049 -1.8473 17 1 12.3673 1.0164 -3.7548 18 1 10.3651 2.3427 -3.4196 19 6 6.6286 0.3714 -1.1982 20 6 5.1173 0.6397 -1.3147 21 1 2.9717 -0.6203 -0.8188 22 1 2.9715 -0.3977 0.9472 23 1 2.7538 2.0530 0.6385 24 1 2.7538 1.8305 -1.1276 25 1 5.4036 -0.0037 1.0814 26 1 4.3370 1.1882 1.8691 27 1 6.5144 1.8898 2.5073 28 1 6.1120 2.9530 1.1456 29 1 8.3645 2.1102 1.0138 30 1 7.7462 0.4484 1.0235 31 1 8.5124 1.7669 -2.4840 32 1 9.2220 2.4668 -1.0092 33 1 12.2684 -1.0019 -1.9044 34 1 6.7882 -0.4468 -0.4961 35 1 7.0105 0.0761 -2.1755 36 1 4.5926 -0.3150 -1.3525 37 1 4.9283 1.1812 -2.2417 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331876310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:39 Heat of formation + Delta-G solvation = 20.594738 kcal Electronic energy + Delta-G solvation = -17122.433428 eV Core-core repulsion = 14513.135366 eV Total energy + Delta-G solvation = -2609.298063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41212 -38.20170 -37.03105 -34.74047 -33.61295 -32.07841 -30.08718 -27.59750 -26.60005 -24.32593 -23.58495 -21.14665 -20.51686 -18.88848 -18.53999 -17.21120 -16.86873 -16.28794 -16.10783 -15.44860 -15.36729 -14.90648 -14.53842 -14.37781 -14.17591 -13.96865 -13.52810 -13.41590 -13.26766 -13.02155 -12.78888 -12.67081 -12.20319 -11.96226 -11.80494 -11.68031 -11.66527 -11.46301 -11.39870 -11.22839 -10.76692 -8.96985 -8.79025 -8.29560 -6.34196 1.38137 1.39818 1.51578 1.80008 1.83811 2.36319 2.88749 3.06628 3.25941 3.45185 4.07963 4.13201 4.24888 4.28293 4.38140 4.42728 4.54593 4.67970 4.78934 4.83877 4.88972 5.01250 5.07333 5.15141 5.20123 5.22289 5.25252 5.29883 5.39163 5.51313 5.69119 6.15805 6.31510 6.44338 6.53397 6.62467 6.65473 6.75144 7.34141 8.86631 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045892 B = 0.005163 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.981799 B = 5421.660255 C = 5570.418589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.243 3.757 3 C -0.064 4.064 4 C 0.071 3.929 5 N -0.541 5.541 6 C 0.066 3.934 7 C -0.105 4.105 8 C 0.069 3.931 9 N -0.512 5.512 10 C 0.160 3.840 11 C -0.547 4.547 12 H 0.035 0.965 13 C 0.011 3.989 14 N -0.948 5.948 15 Si 0.947 3.053 16 H -0.269 1.269 17 H -0.286 1.286 18 H -0.245 1.245 19 C 0.067 3.933 20 C 0.075 3.925 21 H 0.123 0.877 22 H 0.125 0.875 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.033 0.967 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.005 0.995 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.265 0.735 34 H 0.013 0.987 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.611 4.909 3.577 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.074 4.074 3 C -0.106 4.106 4 C -0.058 4.058 5 N -0.264 5.264 6 C -0.062 4.062 7 C -0.144 4.144 8 C -0.059 4.059 9 N -0.234 5.234 10 C 0.032 3.968 11 C -0.586 4.586 12 H 0.053 0.947 13 C -0.187 4.187 14 N -0.589 5.589 15 Si 0.770 3.230 16 H -0.194 1.194 17 H -0.212 1.212 18 H -0.168 1.168 19 C -0.062 4.062 20 C -0.053 4.053 21 H 0.140 0.860 22 H 0.143 0.857 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.051 0.949 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.252 5.712 3.345 16.626 hybrid contribution 1.781 -1.614 -0.153 2.408 sum -13.471 4.098 3.193 14.438 Atomic orbital electron populations 1.81265 1.14902 1.10718 1.11170 1.29486 0.95339 0.91365 0.91185 1.20351 0.79997 1.03002 1.07241 1.22257 0.86207 0.92831 1.04506 1.60560 1.05590 1.56909 1.03357 1.21837 0.97069 0.96737 0.90572 1.20588 0.93836 1.01157 0.98790 1.20906 0.98470 0.98117 0.88364 1.61971 1.16942 1.39715 1.04777 1.20187 0.87363 0.94324 0.94881 1.21985 1.01445 1.02409 1.32755 0.94705 1.25904 0.97566 0.98026 0.97168 1.70073 1.13179 1.28467 1.47144 0.85711 0.78958 0.79389 0.78915 1.19421 1.21206 1.16847 1.21717 0.94135 0.91050 0.99347 1.22506 0.92414 0.96237 0.94095 0.85970 0.85731 0.88780 0.89654 0.94900 0.88455 0.90411 0.90973 0.93661 0.97623 0.95262 0.95809 0.92613 0.96823 0.92959 0.92163 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.29 18.54 20.01 0.37 -11.92 16 2 C 0.24 4.21 15.43 89.44 1.38 5.59 16 3 C -0.06 -0.71 5.22 28.79 0.15 -0.56 16 4 C 0.07 0.96 5.08 86.30 0.44 1.40 16 5 N -0.54 -11.01 4.32 -895.07 -3.87 -14.87 16 6 C 0.07 1.33 4.37 87.22 0.38 1.71 16 7 C -0.11 -2.68 5.66 28.91 0.16 -2.52 16 8 C 0.07 2.47 4.40 83.96 0.37 2.84 16 9 N -0.51 -19.75 4.62 -915.36 -4.23 -23.98 16 10 C 0.16 7.38 3.92 85.56 0.34 7.71 16 11 C -0.55 -30.06 8.33 25.60 0.21 -29.84 16 12 H 0.03 2.13 6.78 -2.91 -0.02 2.11 16 13 C 0.01 0.64 5.47 84.66 0.46 1.10 16 14 N -0.95 -58.02 13.96 21.45 0.30 -57.72 16 15 Si 0.95 43.11 27.47 68.60 1.88 45.00 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.25 -10.38 6.54 99.48 0.65 -9.73 16 19 C 0.07 2.35 4.08 87.11 0.36 2.71 16 20 C 0.07 1.77 5.64 86.37 0.49 2.26 16 21 H 0.12 1.18 6.20 -2.38 -0.01 1.17 16 22 H 0.12 1.05 7.28 -2.39 -0.02 1.03 16 23 H 0.09 1.10 7.90 -2.39 -0.02 1.08 16 24 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.03 0.73 6.96 -2.39 -0.02 0.71 16 26 H 0.10 1.34 7.31 -2.39 -0.02 1.32 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 29 H 0.04 1.72 7.71 -2.38 -0.02 1.70 16 30 H 0.01 0.22 6.89 -2.39 -0.02 0.20 16 31 H 0.03 1.35 7.17 -2.39 -0.02 1.34 16 32 H 0.02 1.10 7.33 -2.39 -0.02 1.08 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.01 0.51 6.20 -2.39 -0.01 0.50 16 35 H 0.05 2.05 7.36 -2.39 -0.02 2.03 16 36 H 0.06 1.10 5.80 -2.39 -0.01 1.09 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -68.15 289.00 0.19 -67.96 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.00 Total: 3.14 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.74 Total: -7.61 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -7.42 Total: -108.49 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Total: -68.15 0.19 -67.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331876310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.556 kcal (2) G-P(sol) polarization free energy of solvation -68.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds