Wall clock time and date at job start Sun Mar 29 2020 22:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47554 * 2 1 4 4 C 1.37099 * 119.99699 * 277.20234 * 3 2 1 5 5 H 1.07999 * 120.00296 * 140.58369 * 4 3 2 6 6 C 1.38947 * 120.00323 * 320.58806 * 4 3 2 7 7 N 1.31412 * 120.00477 * 161.00663 * 6 4 3 8 8 Si 1.86800 * 119.99806 * 341.28536 * 6 4 3 9 9 H 1.48502 * 109.47526 * 95.58895 * 8 6 4 10 10 H 1.48498 * 109.47491 * 215.59077 * 8 6 4 11 11 H 1.48506 * 109.47270 * 335.59009 * 8 6 4 12 12 C 1.34772 * 120.00588 * 97.19862 * 3 2 1 13 13 O 1.21286 * 120.00267 * 176.03003 * 12 3 2 14 14 C 1.50702 * 119.99697 * 356.03109 * 12 3 2 15 15 C 1.55930 * 115.91978 * 305.60051 * 14 12 3 16 16 C 1.54583 * 104.63965 * 199.96793 * 15 14 12 17 17 C 1.55919 * 104.64917 * 0.02562 * 16 15 14 18 18 C 1.55930 * 105.23187 * 289.53318 * 17 16 15 19 19 C 1.55925 * 115.92183 * 69.72666 * 14 12 3 20 20 C 1.56953 * 116.22599 * 187.66440 * 14 12 3 21 21 H 1.09006 * 109.46622 * 67.75410 * 1 2 3 22 22 H 1.08994 * 109.47727 * 187.75524 * 1 2 3 23 23 H 1.08998 * 109.47168 * 307.76490 * 1 2 3 24 24 H 1.08998 * 109.47236 * 239.99609 * 2 1 3 25 25 H 1.09002 * 109.46545 * 119.99882 * 2 1 3 26 26 H 0.97002 * 120.00311 * 180.02562 * 7 6 4 27 27 H 1.08988 * 110.40411 * 318.75558 * 15 14 12 28 28 H 1.09001 * 110.40033 * 81.18426 * 15 14 12 29 29 H 1.08998 * 110.40252 * 241.20592 * 16 15 14 30 30 H 1.08996 * 110.50009 * 118.84772 * 16 15 14 31 31 H 1.08996 * 115.92910 * 160.02863 * 17 16 15 32 32 H 1.09000 * 110.40298 * 189.25998 * 18 17 16 33 33 H 1.09002 * 110.39817 * 311.55647 * 18 17 16 34 34 H 1.09000 * 110.40644 * 278.82036 * 19 14 12 35 35 H 1.08997 * 110.40166 * 41.23876 * 19 14 12 36 36 H 1.09004 * 112.02527 * 296.35586 * 20 14 12 37 37 H 1.09000 * 112.02624 * 62.87009 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1066 2.0770 -1.1780 5 1 1.8372 3.1224 -1.2092 6 6 2.5425 1.4373 -2.3319 7 7 2.2842 1.9590 -3.5100 8 14 3.4890 -0.1685 -2.2088 9 1 2.5519 -1.3091 -2.3707 10 1 4.5193 -0.2189 -3.2769 11 1 4.1481 -0.2541 -0.8808 12 6 2.3810 1.9678 1.1579 13 8 2.8528 3.0851 1.1500 14 6 2.2002 1.2354 2.4625 15 6 0.7624 0.7072 2.7541 16 6 0.7297 0.4873 4.2838 17 6 2.1504 0.9040 4.7726 18 6 3.1075 -0.2087 4.2460 19 6 3.1405 0.0133 2.6941 20 6 2.4749 2.0640 3.7669 21 1 -0.3633 0.3891 -0.9513 22 1 -0.3634 -1.0182 0.1387 23 1 -0.3633 0.6294 0.8124 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.5882 1.5123 -4.3155 27 1 0.0187 1.4480 2.4607 28 1 0.5900 -0.2336 2.2312 29 1 0.5410 -0.5614 4.5130 30 1 -0.0304 1.1186 4.7440 31 1 2.2382 1.1459 5.8317 32 1 4.1017 -0.0899 4.6767 33 1 2.7082 -1.1955 4.4804 34 1 2.7558 -0.8656 2.1766 35 1 4.1512 0.2421 2.3564 36 1 3.5141 2.3860 3.8355 37 1 1.7848 2.9011 3.8724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335660607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:21 Heat of formation + Delta-G solvation = -17.147642 kcal Electronic energy + Delta-G solvation = -18326.657895 eV Core-core repulsion = 15683.430449 eV Total energy + Delta-G solvation = -2643.227446 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46453 -37.77058 -35.20280 -32.28320 -30.39352 -29.78058 -29.29094 -27.34768 -24.94529 -23.08186 -21.85497 -20.88128 -19.22404 -18.16348 -16.83866 -16.19744 -15.82232 -15.12572 -14.82376 -14.31194 -13.71104 -13.23268 -12.92719 -12.48076 -12.35277 -12.30405 -12.11289 -11.91408 -11.60836 -11.31127 -11.15136 -10.84423 -10.70457 -10.67568 -10.64596 -10.49189 -10.10304 -9.91752 -9.74207 -9.69458 -8.99692 -8.39096 -7.67938 -6.34200 -3.93956 3.05405 3.23522 3.27751 3.71209 4.18229 4.40013 4.64885 4.70559 4.76704 5.04854 5.29704 5.33264 5.40972 5.47373 5.57445 5.63915 5.65316 5.68782 5.93860 5.96443 5.99435 6.01613 6.09387 6.14588 6.21993 6.25267 6.35523 6.40398 6.45441 6.50578 6.53466 6.57821 6.88377 7.62427 8.34227 8.59137 9.02199 9.37064 9.85866 10.78132 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033956 B = 0.009196 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.388748 B = 3044.168153 C = 3100.060076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 N -0.463 5.463 4 C -0.310 4.310 5 H 0.103 0.897 6 C 0.060 3.940 7 N -0.869 5.869 8 Si 0.880 3.120 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.265 1.265 12 C 0.494 3.506 13 O -0.562 6.562 14 C -0.092 4.092 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.109 4.109 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.094 4.094 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.273 0.727 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 -8.343 13.599 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.043 4.043 3 N -0.184 5.184 4 C -0.437 4.437 5 H 0.120 0.880 6 C -0.145 4.145 7 N -0.506 5.506 8 Si 0.708 3.292 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.189 1.189 12 C 0.282 3.718 13 O -0.444 6.444 14 C -0.095 4.095 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.127 4.127 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.132 4.132 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.098 -7.789 13.342 15.591 hybrid contribution 0.464 -0.985 -0.318 1.134 sum -1.634 -8.774 13.023 15.788 Atomic orbital electron populations 1.22322 0.96314 1.00590 1.03482 1.22040 0.94939 0.86078 1.01273 1.43700 1.56652 1.11519 1.06575 1.19021 1.43935 0.97422 0.83322 0.87985 1.25363 0.96011 0.98215 0.94948 1.69727 1.42908 1.40449 0.97491 0.86889 0.80438 0.83364 0.78477 1.20305 1.21641 1.18935 1.19519 0.80956 0.87394 0.83958 1.90548 1.46819 1.20266 1.86738 1.22911 0.96264 0.95997 0.94370 1.22963 0.95717 1.01251 0.95493 1.22619 0.96545 1.00617 0.95790 1.23558 0.95126 0.95937 0.98125 1.22962 0.99205 0.98102 0.95077 1.23074 0.99683 0.96712 0.95603 1.23294 1.01595 0.96218 0.92103 0.91642 0.93094 0.91797 0.92301 0.90759 0.91712 0.91364 0.90544 0.91941 0.92015 0.88705 0.91886 0.91884 0.91234 0.91432 0.91040 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 8.89 37.16 0.33 -2.65 16 2 C 0.08 1.63 4.57 -4.04 -0.02 1.61 16 3 N -0.46 -11.41 2.17 -114.82 -0.25 -11.66 16 4 C -0.31 -8.93 9.28 -14.93 -0.14 -9.07 16 5 H 0.10 3.31 7.98 -52.49 -0.42 2.89 16 6 C 0.06 1.69 5.37 -17.47 -0.09 1.60 16 7 N -0.87 -25.59 13.96 55.50 0.77 -24.82 16 8 Si 0.88 21.17 24.86 -169.99 -4.23 16.95 16 9 H -0.28 -6.18 6.76 56.52 0.38 -5.80 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.49 11.83 7.05 -10.99 -0.08 11.76 16 13 O -0.56 -15.77 16.45 5.55 0.09 -15.68 16 14 C -0.09 -1.64 0.85 -150.39 -0.13 -1.77 16 15 C -0.12 -1.73 3.72 -24.33 -0.09 -1.82 16 16 C -0.12 -1.40 6.22 -24.34 -0.15 -1.56 16 17 C -0.11 -1.33 5.14 -85.37 -0.44 -1.77 16 18 C -0.12 -1.41 6.33 -23.11 -0.15 -1.55 16 19 C -0.11 -1.75 5.42 -23.11 -0.13 -1.88 16 20 C -0.09 -1.50 5.64 -22.47 -0.13 -1.63 16 21 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.07 5.21 -51.93 -0.27 0.80 16 24 H 0.06 1.28 2.95 -51.93 -0.15 1.13 16 25 H 0.07 1.31 3.07 -51.93 -0.16 1.15 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.07 1.07 7.21 -51.94 -0.37 0.70 16 28 H 0.08 1.07 4.93 -51.93 -0.26 0.81 16 29 H 0.06 0.65 7.88 -51.93 -0.41 0.24 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 34 H 0.07 1.02 5.81 -51.93 -0.30 0.71 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 273.27 15.07 4.12 4.12 Total: -1.00 -31.89 273.27 -5.98 -37.88 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.29 Total: 1.93 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.20 Total: -8.72 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.53 Total: -36.47 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.09 Total: -15.68 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.23 Total: 16.95 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.89 -5.98 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335660607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.731 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds