Wall clock time and date at job start Sun Mar 29 2020 22:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46911 * 2 1 4 4 C 1.52994 * 109.47448 * 239.99623 * 2 1 3 5 5 C 1.50700 * 109.47141 * 65.00076 * 4 2 1 6 6 H 1.07995 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99966 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46684 * 60.00304 * 9 7 5 11 11 H 1.48500 * 109.47005 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47360 * 300.00486 * 9 7 5 13 13 C 1.52998 * 109.46912 * 119.99580 * 2 1 3 14 14 N 1.46902 * 109.47421 * 295.00475 * 13 2 1 15 15 C 1.46895 * 111.00209 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47315 * 180.02562 * 15 14 13 17 17 C 1.34669 * 126.59585 * 95.16173 * 16 15 14 18 18 N 1.34133 * 108.02235 * 180.28483 * 17 16 15 19 19 C 1.30502 * 109.25197 * 359.73051 * 18 17 16 20 20 N 1.35041 * 108.70384 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.39764 * 180.02562 * 20 19 18 22 22 H 1.09006 * 109.46907 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47768 * 300.00209 * 1 2 3 24 24 H 1.09002 * 109.47000 * 60.00614 * 1 2 3 25 25 H 1.09002 * 109.47426 * 185.00368 * 4 2 1 26 26 H 1.09004 * 109.47402 * 305.00376 * 4 2 1 27 27 H 0.96996 * 120.00024 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47363 * 175.00039 * 13 2 1 29 29 H 1.09006 * 109.47075 * 55.00347 * 13 2 1 30 30 H 1.00895 * 111.00290 * 56.04349 * 14 13 2 31 31 H 1.09000 * 109.47453 * 59.99508 * 15 14 13 32 32 H 1.09006 * 109.46924 * 299.99746 * 15 14 13 33 33 H 1.07993 * 125.98713 * 0.05405 * 17 16 15 34 34 H 1.07998 * 125.64430 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47391 * 90.01916 * 21 20 19 36 36 H 1.09001 * 109.46813 * 330.01972 * 21 20 19 37 37 H 1.09004 * 109.47041 * 210.02099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4765 6 1 1.0801 0.9740 -2.3757 7 6 1.9934 -0.4019 -3.7282 8 7 2.6766 -1.5189 -3.8510 9 14 1.4987 0.5624 -5.2496 10 1 2.0899 1.9233 -5.1870 11 1 1.9939 -0.1376 -6.4621 12 1 0.0187 0.6679 -5.3093 13 6 2.0400 -0.7212 1.2493 14 7 1.6512 0.0375 2.4457 15 6 2.1256 -0.6263 3.6672 16 6 1.7084 0.1788 4.8709 17 6 0.6093 -0.0148 5.6246 18 7 0.6006 0.9144 6.5919 19 6 1.6555 1.6728 6.4696 20 7 2.3753 1.2459 5.4098 21 6 3.6325 1.8204 4.9245 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 3.1264 -0.7996 -1.2054 26 1 1.6054 -1.7199 -1.2951 27 1 2.9246 -1.8414 -4.7315 28 1 3.1263 -0.7994 1.2057 29 1 1.6053 -1.7198 1.2952 30 1 0.6528 0.1794 2.4753 31 1 3.2125 -0.7036 3.6402 32 1 1.6919 -1.6244 3.7301 33 1 -0.1364 -0.7813 5.4741 34 1 1.9103 2.5046 7.1096 35 1 4.4710 1.3282 5.4171 36 1 3.6548 2.8870 5.1483 37 1 3.7070 1.6736 3.8469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877537969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:38 Heat of formation + Delta-G solvation = 43.818209 kcal Electronic energy + Delta-G solvation = -16385.554606 eV Core-core repulsion = 13777.263588 eV Total energy + Delta-G solvation = -2608.291017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.10221 -37.05869 -34.33170 -33.87997 -32.12925 -29.89167 -27.06550 -26.95056 -25.98026 -24.20792 -22.14761 -21.47172 -20.08603 -18.96959 -17.14558 -16.42548 -15.88886 -15.58265 -14.67466 -14.33364 -14.19703 -14.09137 -13.50651 -13.28355 -12.98624 -12.84726 -12.46186 -12.31418 -11.96671 -11.75100 -11.37494 -10.89441 -10.76580 -10.37354 -10.25777 -9.99747 -9.75223 -9.63236 -9.19865 -9.00902 -8.50633 -8.34346 -8.19433 -5.99162 -4.00503 1.94753 2.74300 3.10808 3.33500 3.37961 3.40482 4.40771 4.49960 4.61640 4.67852 4.69295 4.98811 5.16204 5.29635 5.34591 5.36652 5.53535 5.66494 5.72861 5.78876 6.02937 6.21841 6.31350 6.43327 6.52498 6.67099 6.88904 7.08624 7.11621 7.14076 7.27737 7.55682 7.67153 7.83106 8.00741 8.01151 8.44489 9.05603 9.63033 11.12317 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.049182 B = 0.003980 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.182961 B = 7034.184435 C = 7090.160344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.130 3.870 16 C -0.012 4.012 17 C -0.028 4.028 18 N -0.497 5.497 19 C 0.174 3.826 20 N -0.449 5.449 21 C 0.070 3.930 22 H 0.042 0.958 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.260 0.740 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.343 0.657 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.166 0.834 34 H 0.202 0.798 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 4.124 17.347 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.009 4.009 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.322 5.322 15 C 0.000 4.000 16 C -0.127 4.127 17 C -0.177 4.177 18 N -0.215 5.215 19 C -0.108 4.108 20 N -0.131 5.131 21 C -0.073 4.073 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.163 0.837 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.183 0.817 34 H 0.219 0.781 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.324 4.571 17.725 18.352 hybrid contribution -0.137 -0.298 -1.473 1.509 sum 1.187 4.273 16.252 16.846 Atomic orbital electron populations 1.21746 0.96593 1.00536 1.00328 1.21215 0.94960 0.99992 0.94051 0.91752 1.19106 0.96086 0.95403 0.90322 1.21197 1.34746 1.08321 0.91003 0.92629 1.25013 0.95301 0.95078 0.99086 1.69950 1.38998 1.21211 1.23520 0.86690 0.78902 0.80125 0.82476 1.20281 1.21357 1.20283 1.22171 1.00317 0.94642 0.89322 1.60634 1.20330 1.50372 1.00841 1.20256 1.00567 0.93603 0.85604 1.21231 0.96916 0.94309 1.00268 1.22072 0.98675 1.01646 0.95331 1.70254 1.20228 1.06603 1.24367 1.24879 0.90666 1.02533 0.92757 1.45244 1.19922 1.24366 1.23598 1.22087 0.83226 0.99362 1.02575 0.93923 0.94937 0.91852 0.96697 0.96697 0.93021 0.91457 0.95494 0.83741 0.90545 0.92914 0.81662 0.78113 0.90837 0.89617 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.77 37.16 0.33 -2.16 16 2 C -0.08 -1.66 2.54 -90.62 -0.23 -1.89 16 3 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 6 H 0.06 1.50 7.05 -52.49 -0.37 1.13 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 14 N -0.69 -9.68 6.49 -115.06 -0.75 -10.43 16 15 C 0.13 1.55 5.74 -4.98 -0.03 1.52 16 16 C -0.01 -0.14 6.46 -81.60 -0.53 -0.67 16 17 C -0.03 -0.37 11.79 -17.81 -0.21 -0.58 16 18 N -0.50 -6.87 11.25 -14.67 -0.17 -7.04 16 19 C 0.17 1.92 12.56 -90.37 -1.14 0.78 16 20 N -0.45 -4.86 3.15 -121.36 -0.38 -5.25 16 21 C 0.07 0.53 10.96 59.85 0.66 1.19 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 24 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.34 4.87 6.98 -39.29 -0.27 4.59 16 31 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.86 7.88 -51.93 -0.41 0.46 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -31.77 308.65 -8.57 -40.35 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.97 Total: 0.44 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.68 Total: -13.24 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.56 Total: -48.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.77 -8.57 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877537969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.168 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds