Wall clock time and date at job start Sun Mar 29 2020 22:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46911 * 2 1 4 4 C 1.52994 * 109.47448 * 239.99623 * 2 1 3 5 5 C 1.50700 * 109.47141 * 65.00076 * 4 2 1 6 6 H 1.07995 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00065 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99966 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46684 * 60.00304 * 9 7 5 11 11 H 1.48500 * 109.47005 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47360 * 300.00486 * 9 7 5 13 13 C 1.52998 * 109.46912 * 119.99580 * 2 1 3 14 14 N 1.46902 * 109.47421 * 295.00475 * 13 2 1 15 15 C 1.46895 * 111.00209 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47315 * 180.02562 * 15 14 13 17 17 C 1.34669 * 126.59585 * 95.16173 * 16 15 14 18 18 N 1.34133 * 108.02235 * 180.28483 * 17 16 15 19 19 C 1.30502 * 109.25197 * 359.73051 * 18 17 16 20 20 N 1.35041 * 108.70384 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.39764 * 180.02562 * 20 19 18 22 22 H 1.09006 * 109.46907 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47768 * 300.00209 * 1 2 3 24 24 H 1.09002 * 109.47000 * 60.00614 * 1 2 3 25 25 H 1.09002 * 109.47426 * 185.00368 * 4 2 1 26 26 H 1.09004 * 109.47402 * 305.00376 * 4 2 1 27 27 H 0.96996 * 120.00024 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47363 * 175.00039 * 13 2 1 29 29 H 1.09006 * 109.47075 * 55.00347 * 13 2 1 30 30 H 1.00895 * 111.00290 * 56.04349 * 14 13 2 31 31 H 1.09000 * 109.47453 * 59.99508 * 15 14 13 32 32 H 1.09006 * 109.46924 * 299.99746 * 15 14 13 33 33 H 1.07993 * 125.98713 * 0.05405 * 17 16 15 34 34 H 1.07998 * 125.64430 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47391 * 90.01916 * 21 20 19 36 36 H 1.09001 * 109.46813 * 330.01972 * 21 20 19 37 37 H 1.09004 * 109.47041 * 210.02099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4765 6 1 1.0801 0.9740 -2.3757 7 6 1.9934 -0.4019 -3.7282 8 7 2.6766 -1.5189 -3.8510 9 14 1.4987 0.5624 -5.2496 10 1 2.0899 1.9233 -5.1870 11 1 1.9939 -0.1376 -6.4621 12 1 0.0187 0.6679 -5.3093 13 6 2.0400 -0.7212 1.2493 14 7 1.6512 0.0375 2.4457 15 6 2.1256 -0.6263 3.6672 16 6 1.7084 0.1788 4.8709 17 6 0.6093 -0.0148 5.6246 18 7 0.6006 0.9144 6.5919 19 6 1.6555 1.6728 6.4696 20 7 2.3753 1.2459 5.4098 21 6 3.6325 1.8204 4.9245 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 3.1264 -0.7996 -1.2054 26 1 1.6054 -1.7199 -1.2951 27 1 2.9246 -1.8414 -4.7315 28 1 3.1263 -0.7994 1.2057 29 1 1.6053 -1.7198 1.2952 30 1 0.6528 0.1794 2.4753 31 1 3.2125 -0.7036 3.6402 32 1 1.6919 -1.6244 3.7301 33 1 -0.1364 -0.7813 5.4741 34 1 1.9103 2.5046 7.1096 35 1 4.4710 1.3282 5.4171 36 1 3.6548 2.8870 5.1483 37 1 3.7070 1.6736 3.8469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877537969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:38 Heat of formation + Delta-G solvation = 24.246155 kcal Electronic energy + Delta-G solvation = -16386.403314 eV Core-core repulsion = 13777.263588 eV Total energy + Delta-G solvation = -2609.139725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.96120 -38.46042 -35.81927 -34.81139 -33.98579 -31.04756 -28.82614 -27.74456 -27.27443 -25.67576 -23.80551 -22.32612 -21.08602 -20.48222 -18.54791 -17.92590 -16.85936 -16.75215 -16.49441 -15.54124 -15.33693 -15.30896 -14.62754 -14.47058 -14.17172 -13.95859 -13.65275 -13.51531 -13.31431 -13.15804 -12.95689 -12.75095 -12.55910 -12.22328 -11.93906 -11.50049 -11.08864 -11.01733 -10.85966 -10.51933 -10.45827 -9.51828 -9.25145 -8.16674 -6.25561 1.07501 1.40990 1.43214 1.50943 1.99434 2.19836 2.42820 3.16921 3.33483 3.75944 3.93550 4.02727 4.18500 4.23981 4.31800 4.43538 4.47394 4.52372 4.60813 4.77795 4.80044 4.83985 4.89993 5.03757 5.24607 5.38758 5.45022 5.48901 5.55813 5.77264 5.80935 5.90390 6.02515 6.31860 6.35059 6.41164 6.90357 7.13791 7.42693 8.95070 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.049182 B = 0.003980 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.182961 B = 7034.184435 C = 7090.160344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.531 4.531 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.078 3.922 14 N -0.686 5.686 15 C 0.136 3.864 16 C -0.022 4.022 17 C -0.045 4.045 18 N -0.536 5.536 19 C 0.180 3.820 20 N -0.451 5.451 21 C 0.067 3.933 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.043 0.957 25 H -0.011 1.011 26 H -0.009 1.009 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.344 0.656 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.172 0.828 34 H 0.238 0.762 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 5.500 18.140 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.051 4.051 14 N -0.319 5.319 15 C 0.006 3.994 16 C -0.138 4.138 17 C -0.194 4.194 18 N -0.254 5.254 19 C -0.103 4.103 20 N -0.132 5.132 21 C -0.075 4.075 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.164 0.836 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.189 0.811 34 H 0.254 0.746 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.241 5.959 18.528 19.502 hybrid contribution -0.075 -0.712 -1.652 1.801 sum 1.166 5.247 16.875 17.711 Atomic orbital electron populations 1.21654 0.95253 1.00703 1.00870 1.21000 0.95989 0.98988 0.93331 0.92586 1.18999 0.94347 0.94578 0.92527 1.21619 1.34482 1.08597 0.92166 0.92234 1.25916 0.95267 0.96063 1.02546 1.70083 1.40244 1.22889 1.24331 0.85597 0.78904 0.78822 0.78318 1.19300 1.21031 1.19321 1.21857 0.99932 0.94361 0.88938 1.60548 1.20404 1.50198 1.00737 1.20220 1.00906 0.93765 0.84480 1.21197 0.97158 0.95086 1.00366 1.22314 0.99328 1.02071 0.95667 1.70237 1.22014 1.07777 1.25407 1.25597 0.89630 1.02435 0.92607 1.45469 1.20592 1.23817 1.23355 1.22290 0.82384 1.00976 1.01802 0.93938 0.91871 0.93756 0.99249 0.99103 0.92942 0.91794 0.95379 0.83638 0.89891 0.92125 0.81103 0.74593 0.89113 0.87188 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 8.77 71.98 0.63 -3.96 16 2 C -0.07 -2.94 2.54 -10.80 -0.03 -2.97 16 3 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.03 1.70 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.73 8.41 25.60 0.22 -29.52 16 6 H 0.06 3.22 7.05 -2.91 -0.02 3.20 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 9 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.08 2.51 5.14 86.30 0.44 2.95 16 14 N -0.69 -18.24 6.49 -517.93 -3.36 -21.60 16 15 C 0.14 3.04 5.74 85.56 0.49 3.53 16 16 C -0.02 -0.50 6.46 40.95 0.26 -0.24 16 17 C -0.05 -1.14 11.79 83.52 0.98 -0.15 16 18 N -0.54 -14.14 11.25 -200.31 -2.25 -16.39 16 19 C 0.18 3.55 12.56 180.26 2.26 5.82 16 20 N -0.45 -8.76 3.15 -537.88 -1.70 -10.46 16 21 C 0.07 0.84 10.96 127.77 1.40 2.24 16 22 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 23 H 0.06 1.88 6.68 -2.39 -0.02 1.86 16 24 H 0.04 1.75 6.95 -2.39 -0.02 1.73 16 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 27 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.34 9.11 6.98 -89.70 -0.63 8.48 16 31 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 32 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.24 2.55 8.06 -2.91 -0.02 2.52 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.32 7.88 -2.38 -0.02 1.31 16 Total: -1.00 -68.57 308.65 2.68 -65.90 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.41 Total: 12.78 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 7.26 Total: -20.03 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -7.02 Total: -104.86 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.57 2.68 -65.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877537969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.143 kcal (2) G-P(sol) polarization free energy of solvation -68.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds