Wall clock time and date at job start Sun Mar 29 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09003 * 109.50369 * 130.25862 * 3 2 1 5 5 C 1.53095 * 109.50682 * 250.34734 * 3 2 1 6 6 O 1.43015 * 109.25602 * 176.78606 * 5 3 2 7 7 C 1.43015 * 113.73889 * 301.32808 * 6 5 3 8 8 C 1.53094 * 109.25878 * 58.67327 * 7 6 5 9 9 N 1.47015 * 109.50509 * 10.17515 * 3 2 1 10 10 C 1.46898 * 111.00122 * 57.67268 * 9 3 2 11 11 C 1.53005 * 109.46836 * 169.99917 * 10 9 3 12 12 H 1.09002 * 109.46976 * 304.99834 * 11 10 9 13 13 C 1.52995 * 109.47125 * 65.00035 * 11 10 9 14 14 C 1.52996 * 109.46757 * 184.99820 * 11 10 9 15 15 C 1.50700 * 109.47121 * 174.99652 * 14 11 10 16 16 H 1.08001 * 120.00086 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00068 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99545 * 180.02562 * 17 15 14 19 19 Si 1.86790 * 120.00246 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47230 * 89.99689 * 19 17 15 21 21 H 1.48498 * 109.47403 * 210.00133 * 19 17 15 22 22 H 1.48506 * 109.47088 * 329.99901 * 19 17 15 23 23 H 4.18795 * 15.02926 * 0.02562 * 4 2 1 24 24 H 1.09001 * 109.50280 * 296.71968 * 5 3 2 25 25 H 1.08995 * 109.50640 * 56.85148 * 5 3 2 26 26 H 1.08997 * 109.50445 * 178.61133 * 7 6 5 27 27 H 1.09008 * 109.50318 * 298.73481 * 7 6 5 28 28 H 1.08997 * 109.50849 * 63.08691 * 8 7 6 29 29 H 1.08996 * 109.50421 * 183.22385 * 8 7 6 30 30 H 1.09002 * 109.47051 * 289.99741 * 10 9 3 31 31 H 1.09001 * 109.47182 * 50.00095 * 10 9 3 32 32 H 1.09002 * 109.47087 * 179.97438 * 13 11 10 33 33 H 1.09001 * 109.47130 * 299.99559 * 13 11 10 34 34 H 1.09002 * 109.47358 * 60.00033 * 13 11 10 35 35 H 1.08997 * 109.47516 * 295.00040 * 14 11 10 36 36 H 1.09003 * 109.47135 * 55.00206 * 14 11 10 37 37 H 0.97005 * 119.99743 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 0.6648 -0.7841 5 6 3.1570 0.4862 1.3590 6 8 4.5851 0.4137 1.3792 7 6 5.0983 -0.9007 1.1459 8 6 4.6069 -1.4003 -0.2152 9 7 3.1375 -1.3631 -0.2448 10 6 2.6222 -1.8881 -1.5164 11 6 3.3429 -3.1937 -1.8585 12 1 4.4196 -3.0241 -1.8627 13 6 2.9980 -4.2558 -0.8126 14 6 2.8970 -3.6752 -3.2405 15 6 3.6955 -4.8924 -3.6302 16 1 4.4457 -5.2837 -2.9590 17 6 3.4676 -5.5072 -4.8431 18 7 4.1643 -6.5697 -5.1828 19 14 2.1696 -4.8310 -6.0037 20 1 2.7884 -3.8294 -6.9089 21 1 1.5993 -5.9406 -6.8091 22 1 1.0891 -4.1852 -5.2157 23 1 -1.0500 -0.0001 0.0009 24 1 2.8426 1.5176 1.5187 25 1 2.7492 -0.1456 2.1480 26 1 6.1878 -0.8723 1.1517 27 1 4.7469 -1.5728 1.9289 28 1 5.0025 -0.7590 -1.0028 29 1 4.9483 -2.4235 -0.3722 30 1 1.5525 -2.0767 -1.4248 31 1 2.7962 -1.1589 -2.3077 32 1 3.5110 -5.1860 -1.0566 33 1 3.3156 -3.9127 0.1720 34 1 1.9212 -4.4254 -0.8084 35 1 1.8374 -3.9295 -3.2124 36 1 3.0613 -2.8836 -3.9716 37 1 4.0037 -7.0025 -6.0360 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877585607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:41 Heat of formation + Delta-G solvation = 10.059738 kcal Electronic energy + Delta-G solvation = -17161.531188 eV Core-core repulsion = 14519.483543 eV Total energy + Delta-G solvation = -2642.047646 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89415 -36.84429 -34.70582 -33.18177 -31.89914 -30.47392 -28.34205 -27.20227 -24.65232 -24.47779 -22.20155 -20.95068 -18.87054 -18.32200 -16.87180 -16.29294 -16.17684 -15.35084 -15.14025 -14.93387 -14.35453 -13.79597 -13.67824 -13.08606 -12.63187 -12.47715 -12.25428 -11.76826 -11.63044 -11.40131 -11.00168 -10.97144 -10.75913 -10.51486 -10.42136 -10.33343 -9.93044 -9.70783 -9.61584 -9.43195 -9.04729 -8.53046 -8.24965 -6.03742 -4.00826 2.66660 2.77414 3.30080 3.37850 3.41761 3.70092 4.00781 4.32498 4.45548 4.82449 5.00494 5.06842 5.13322 5.25504 5.30345 5.52277 5.58842 5.64790 5.67371 5.83975 5.88316 5.94227 5.98876 6.28897 6.33757 6.48500 6.79026 6.93358 6.96146 7.05799 7.13892 7.14980 7.26900 7.44967 7.56988 7.80440 8.54909 9.01270 9.59220 11.09579 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031601 B = 0.006088 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.842862 B = 4598.050758 C = 5147.650520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.155 3.845 4 H 0.068 0.932 5 C 0.077 3.923 6 O -0.384 6.384 7 C 0.061 3.939 8 C 0.011 3.989 9 N -0.525 5.525 10 C 0.059 3.941 11 C -0.080 4.080 12 H 0.066 0.934 13 C -0.126 4.126 14 C -0.008 4.008 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.218 0.782 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.016 0.984 36 H 0.008 0.992 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 13.453 12.107 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.047 3.953 4 H 0.085 0.915 5 C 0.000 4.000 6 O -0.303 6.303 7 C -0.016 4.016 8 C -0.117 4.117 9 N -0.251 5.251 10 C -0.068 4.068 11 C -0.099 4.099 12 H 0.084 0.916 13 C -0.183 4.183 14 C -0.046 4.046 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.544 5.544 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.235 0.765 24 H 0.116 0.884 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.026 0.974 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.172 13.174 12.379 18.354 hybrid contribution -0.827 0.486 -1.634 1.895 sum -3.999 13.661 10.745 17.834 Atomic orbital electron populations 1.24862 0.95767 0.99838 1.00500 1.22469 0.93579 1.00650 1.00613 1.19246 0.85344 0.91621 0.99065 0.91463 1.22573 0.81117 1.01701 0.94608 1.87981 1.20041 1.29790 1.92464 1.22779 0.99000 0.83806 0.95988 1.22974 0.87746 1.03569 0.97377 1.62349 1.08421 1.18332 1.35948 1.22397 1.00181 0.96876 0.87361 1.21197 0.99091 0.92247 0.97350 0.91579 1.21630 1.00738 0.99066 0.96904 1.19605 0.96933 0.96555 0.91532 1.21105 1.20527 1.10289 1.03170 0.90809 1.25017 0.95871 0.94735 0.97891 1.69916 1.41147 1.20627 1.22661 0.86818 0.82801 0.78703 0.81191 1.20429 1.21414 1.19087 0.76470 0.88386 0.91870 0.88238 0.92087 0.93756 0.87610 0.90787 0.95169 0.91981 0.93883 0.93966 0.96569 0.97391 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 19.25 29.55 0.57 -1.67 16 2 C -0.17 -2.30 11.43 -37.12 -0.42 -2.73 16 3 C 0.16 2.06 2.40 -70.39 -0.17 1.90 16 4 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 5 C 0.08 0.89 6.25 37.21 0.23 1.13 16 6 O -0.38 -4.86 10.83 -35.23 -0.38 -5.24 16 7 C 0.06 0.70 7.01 37.21 0.26 0.96 16 8 C 0.01 0.15 4.79 -3.71 -0.02 0.13 16 9 N -0.53 -7.77 4.13 -229.70 -0.95 -8.72 16 10 C 0.06 1.00 4.11 -3.82 -0.02 0.99 16 11 C -0.08 -1.57 1.82 -90.62 -0.16 -1.73 16 12 H 0.07 1.29 5.95 -51.93 -0.31 0.98 16 13 C -0.13 -2.38 8.69 37.15 0.32 -2.06 16 14 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 15 C -0.51 -14.40 8.96 -34.44 -0.31 -14.71 16 16 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 23 H 0.22 1.74 7.80 -54.09 -0.42 1.32 16 24 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.11 1.50 5.50 -51.93 -0.29 1.21 16 30 H 0.07 1.31 7.43 -51.93 -0.39 0.92 16 31 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 33 H 0.04 0.72 7.31 -51.93 -0.38 0.34 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 36 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 297.22 15.07 4.48 4.48 Total: -1.00 -30.98 297.22 -6.49 -37.48 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.84 Total: -1.87 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 0.09 Total: -16.28 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.17 Total: -35.79 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.38 Total: -5.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.98 -6.49 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877585607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.535 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds