Wall clock time and date at job start Sun Mar 29 2020 22:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09003 * 109.50369 * 130.25862 * 3 2 1 5 5 C 1.53095 * 109.50682 * 250.34734 * 3 2 1 6 6 O 1.43015 * 109.25602 * 176.78606 * 5 3 2 7 7 C 1.43015 * 113.73889 * 301.32808 * 6 5 3 8 8 C 1.53094 * 109.25878 * 58.67327 * 7 6 5 9 9 N 1.47015 * 109.50509 * 10.17515 * 3 2 1 10 10 C 1.46898 * 111.00122 * 57.67268 * 9 3 2 11 11 C 1.53005 * 109.46836 * 169.99917 * 10 9 3 12 12 H 1.09002 * 109.46976 * 304.99834 * 11 10 9 13 13 C 1.52995 * 109.47125 * 65.00035 * 11 10 9 14 14 C 1.52996 * 109.46757 * 184.99820 * 11 10 9 15 15 C 1.50700 * 109.47121 * 174.99652 * 14 11 10 16 16 H 1.08001 * 120.00086 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00068 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99545 * 180.02562 * 17 15 14 19 19 Si 1.86790 * 120.00246 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47230 * 89.99689 * 19 17 15 21 21 H 1.48498 * 109.47403 * 210.00133 * 19 17 15 22 22 H 1.48506 * 109.47088 * 329.99901 * 19 17 15 23 23 H 4.18795 * 15.02926 * 0.02562 * 4 2 1 24 24 H 1.09001 * 109.50280 * 296.71968 * 5 3 2 25 25 H 1.08995 * 109.50640 * 56.85148 * 5 3 2 26 26 H 1.08997 * 109.50445 * 178.61133 * 7 6 5 27 27 H 1.09008 * 109.50318 * 298.73481 * 7 6 5 28 28 H 1.08997 * 109.50849 * 63.08691 * 8 7 6 29 29 H 1.08996 * 109.50421 * 183.22385 * 8 7 6 30 30 H 1.09002 * 109.47051 * 289.99741 * 10 9 3 31 31 H 1.09001 * 109.47182 * 50.00095 * 10 9 3 32 32 H 1.09002 * 109.47087 * 179.97438 * 13 11 10 33 33 H 1.09001 * 109.47130 * 299.99559 * 13 11 10 34 34 H 1.09002 * 109.47358 * 60.00033 * 13 11 10 35 35 H 1.08997 * 109.47516 * 295.00040 * 14 11 10 36 36 H 1.09003 * 109.47135 * 55.00206 * 14 11 10 37 37 H 0.97005 * 119.99743 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 0.6648 -0.7841 5 6 3.1570 0.4862 1.3590 6 8 4.5851 0.4137 1.3792 7 6 5.0983 -0.9007 1.1459 8 6 4.6069 -1.4003 -0.2152 9 7 3.1375 -1.3631 -0.2448 10 6 2.6222 -1.8881 -1.5164 11 6 3.3429 -3.1937 -1.8585 12 1 4.4196 -3.0241 -1.8627 13 6 2.9980 -4.2558 -0.8126 14 6 2.8970 -3.6752 -3.2405 15 6 3.6955 -4.8924 -3.6302 16 1 4.4457 -5.2837 -2.9590 17 6 3.4676 -5.5072 -4.8431 18 7 4.1643 -6.5697 -5.1828 19 14 2.1696 -4.8310 -6.0037 20 1 2.7884 -3.8294 -6.9089 21 1 1.5993 -5.9406 -6.8091 22 1 1.0891 -4.1852 -5.2157 23 1 -1.0500 -0.0001 0.0009 24 1 2.8426 1.5176 1.5187 25 1 2.7492 -0.1456 2.1480 26 1 6.1878 -0.8723 1.1517 27 1 4.7469 -1.5728 1.9289 28 1 5.0025 -0.7590 -1.0028 29 1 4.9483 -2.4235 -0.3722 30 1 1.5525 -2.0767 -1.4248 31 1 2.7962 -1.1589 -2.3077 32 1 3.5110 -5.1860 -1.0566 33 1 3.3156 -3.9127 0.1720 34 1 1.9212 -4.4254 -0.8084 35 1 1.8374 -3.9295 -3.2124 36 1 3.0613 -2.8836 -3.9716 37 1 4.0037 -7.0025 -6.0360 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877585607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:40 Heat of formation + Delta-G solvation = -10.513339 kcal Electronic energy + Delta-G solvation = -17162.423304 eV Core-core repulsion = 14519.483543 eV Total energy + Delta-G solvation = -2642.939761 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95607 -38.14002 -36.05908 -34.65161 -33.64291 -31.41497 -29.92134 -28.75387 -26.12808 -25.46092 -23.92438 -22.08744 -20.43123 -19.30763 -18.92432 -17.37908 -17.18718 -16.45276 -16.32512 -16.21425 -15.98777 -15.28660 -15.01262 -14.75268 -14.16833 -13.82040 -13.65579 -13.46514 -12.87080 -12.74317 -12.55423 -12.51374 -12.09269 -11.95523 -11.81550 -11.56447 -11.41703 -11.31263 -11.23658 -11.02147 -10.75261 -10.55570 -9.42002 -8.27808 -6.29930 1.33325 1.35278 1.46753 1.70907 1.84965 2.35564 2.78391 2.94830 3.07346 3.42444 3.80143 3.99705 4.01395 4.07688 4.17597 4.31236 4.36159 4.38931 4.64119 4.72877 4.74504 4.80903 4.85785 4.92078 4.96523 5.05117 5.07723 5.33244 5.35201 5.47857 5.64529 5.67975 5.88527 5.94244 6.10395 6.32024 6.66233 6.77034 7.33645 8.88651 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031601 B = 0.006088 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.842862 B = 4598.050758 C = 5147.650520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.216 4.216 3 C 0.155 3.845 4 H 0.062 0.938 5 C 0.081 3.919 6 O -0.394 6.394 7 C 0.065 3.935 8 C 0.010 3.990 9 N -0.528 5.528 10 C 0.073 3.927 11 C -0.075 4.075 12 H 0.062 0.938 13 C -0.116 4.116 14 C -0.006 4.006 15 C -0.517 4.517 16 H 0.039 0.961 17 C 0.004 3.996 18 N -0.951 5.951 19 Si 0.944 3.056 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.250 1.250 23 H 0.250 0.750 24 H 0.118 0.882 25 H 0.065 0.935 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 15.289 12.790 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.217 4.217 3 C 0.048 3.952 4 H 0.079 0.921 5 C 0.004 3.996 6 O -0.312 6.312 7 C -0.012 4.012 8 C -0.118 4.118 9 N -0.253 5.253 10 C -0.054 4.054 11 C -0.093 4.093 12 H 0.081 0.919 13 C -0.173 4.173 14 C -0.043 4.043 15 C -0.555 4.555 16 H 0.057 0.943 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.768 3.232 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.174 1.174 23 H 0.266 0.734 24 H 0.136 0.864 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.697 15.028 13.083 20.471 hybrid contribution -0.323 -0.104 -1.783 1.815 sum -5.019 14.924 11.299 19.380 Atomic orbital electron populations 1.25705 0.96600 0.97839 0.98692 1.22712 0.94111 1.02490 1.02359 1.19276 0.85860 0.90276 0.99826 0.92079 1.22657 0.80531 1.02901 0.93547 1.87975 1.20676 1.30225 1.92346 1.22837 1.00160 0.83524 0.94632 1.23006 0.87122 1.02991 0.98686 1.62324 1.09056 1.19784 1.34166 1.22096 0.99541 0.95256 0.88555 1.21063 0.99195 0.93813 0.95263 0.91934 1.21511 1.00335 0.97600 0.97847 1.19549 0.96054 0.94724 0.94023 1.21402 1.19984 1.11549 1.02560 0.94283 1.25941 0.98326 0.95036 0.99926 1.70063 1.43291 1.22364 1.23502 0.85752 0.80230 0.78266 0.78971 1.19433 1.21000 1.17366 0.73358 0.86382 0.91670 0.86220 0.91534 0.94351 0.88581 0.91108 0.95582 0.94754 0.91646 0.93920 0.96587 0.97084 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 19.25 74.32 1.43 -2.05 16 2 C -0.22 -5.31 11.43 31.13 0.36 -4.95 16 3 C 0.16 3.88 2.40 43.12 0.10 3.98 16 4 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 5 C 0.08 1.69 6.25 72.01 0.45 2.14 16 6 O -0.39 -9.13 10.83 -148.98 -1.61 -10.75 16 7 C 0.07 1.38 7.01 72.01 0.50 1.88 16 8 C 0.01 0.25 4.79 86.31 0.41 0.66 16 9 N -0.53 -14.90 4.13 -880.64 -3.64 -18.54 16 10 C 0.07 2.40 4.11 86.31 0.35 2.76 16 11 C -0.07 -2.89 1.82 -10.79 -0.02 -2.91 16 12 H 0.06 2.46 5.95 -2.39 -0.01 2.45 16 13 C -0.12 -4.34 8.69 71.98 0.63 -3.71 16 14 C -0.01 -0.26 3.52 29.85 0.10 -0.16 16 15 C -0.52 -29.60 8.96 25.60 0.23 -29.38 16 16 H 0.04 2.44 7.30 -2.91 -0.02 2.42 16 17 C 0.00 0.24 5.47 84.65 0.46 0.71 16 18 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 19 Si 0.94 44.83 27.47 68.60 1.88 46.72 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.25 -11.13 6.54 99.48 0.65 -10.47 16 23 H 0.25 3.00 7.80 -4.42 -0.03 2.97 16 24 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 2.67 5.50 -2.39 -0.01 2.66 16 30 H 0.07 2.38 7.43 -2.39 -0.02 2.36 16 31 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.03 1.45 6.95 -2.39 -0.02 1.43 16 33 H 0.06 2.13 7.31 -2.39 -0.02 2.11 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 36 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 37 H 0.26 15.60 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -66.68 297.22 2.92 -63.76 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.97 Total: 9.42 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 5.02 Total: -31.02 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -3.34 Total: -78.13 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -1.61 Total: -10.75 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -66.68 2.92 -63.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877585607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.243 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds