Wall clock time and date at job start Sun Mar 29 2020 21:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99813 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47256 * 34.99938 * 11 10 9 13 13 C 1.52995 * 109.47238 * 274.99652 * 11 10 9 14 14 C 1.53001 * 109.47205 * 300.00263 * 13 11 10 15 15 C 1.53001 * 109.47369 * 300.00228 * 14 13 11 16 16 H 1.09005 * 109.46610 * 300.00189 * 15 14 13 17 17 C 1.52995 * 109.47597 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47273 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.46944 * 60.00287 * 18 17 15 20 20 C 1.53001 * 109.47205 * 299.99847 * 19 18 17 21 21 C 1.53002 * 109.47045 * 60.00215 * 20 19 18 22 22 H 1.09000 * 109.47555 * 59.99900 * 21 20 19 23 23 C 1.53001 * 109.47045 * 179.97438 * 21 20 19 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.00905 * 110.99587 * 303.95108 * 10 9 7 28 28 H 1.09000 * 109.47077 * 60.00151 * 13 11 10 29 29 H 1.09000 * 109.46958 * 180.02562 * 13 11 10 30 30 H 1.09005 * 109.47108 * 59.99472 * 14 13 11 31 31 H 1.08999 * 109.47503 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47101 * 300.00167 * 17 15 14 33 33 H 1.09001 * 109.46689 * 59.99793 * 17 15 14 34 34 H 1.08991 * 109.47331 * 300.00437 * 18 17 15 35 35 H 1.09003 * 109.47001 * 180.02562 * 18 17 15 36 36 H 1.08993 * 109.47344 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47481 * 59.99632 * 19 18 17 38 38 H 1.09000 * 109.47026 * 299.99791 * 20 19 18 39 39 H 1.08999 * 109.47503 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.47108 * 60.00314 * 23 21 20 41 41 H 1.08997 * 109.47516 * 300.00304 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5050 -4.9071 0.0001 12 1 0.5916 -4.8252 -0.5891 13 6 1.1519 -5.2951 1.4373 14 6 2.4340 -5.4099 2.2642 15 6 3.3399 -6.4816 1.6546 16 1 2.8202 -7.4398 1.6550 17 6 4.6223 -6.5961 2.4811 18 6 5.5279 -7.6682 1.8717 19 6 5.8806 -7.2811 0.4342 20 6 4.5982 -7.1666 -0.3924 21 6 3.6926 -6.0944 0.2169 22 1 4.2123 -5.1363 0.2158 23 6 2.4105 -5.9795 -0.6100 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 0.8898 26 1 0.6239 -2.5567 -0.8903 27 1 2.8403 -3.5488 -0.7820 28 1 0.5066 -4.5315 1.8716 29 1 0.6326 -6.2534 1.4377 30 1 2.9538 -4.4517 2.2637 31 1 2.1826 -5.6868 3.2880 32 1 5.1418 -5.6378 2.4803 33 1 4.3710 -6.8723 3.5051 34 1 5.0082 -8.6263 1.8728 35 1 6.4413 -7.7501 2.4609 36 1 6.5260 -8.0446 0.0002 37 1 6.4003 -6.3229 0.4330 38 1 4.0785 -8.1248 -0.3913 39 1 4.8494 -6.8903 -1.4165 40 1 1.8906 -6.9376 -0.6093 41 1 2.6621 -5.7036 -1.6340 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035009900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:42 Heat of formation + Delta-G solvation = -45.965418 kcal Electronic energy + Delta-G solvation = -17732.887832 eV Core-core repulsion = 15224.243848 eV Total energy + Delta-G solvation = -2508.643984 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.66181 -36.25070 -33.43581 -32.27734 -31.51795 -29.09436 -28.17007 -25.68145 -23.10227 -22.05745 -21.37310 -21.31042 -19.59037 -18.48349 -16.33992 -15.13272 -14.89955 -14.67402 -14.48856 -14.22037 -13.81616 -13.45120 -13.27840 -12.64232 -12.38676 -11.90483 -11.78043 -11.68211 -11.53309 -11.17674 -11.05209 -10.97139 -10.80154 -10.62931 -10.57441 -10.48359 -10.29907 -10.01512 -9.82166 -9.47571 -9.25321 -9.08060 -8.43268 -7.16921 -5.99476 -4.00982 3.35268 3.39108 3.42218 4.45855 4.77285 4.83693 4.89906 5.20210 5.25678 5.34309 5.36514 5.44343 5.54080 5.61760 5.67963 5.77304 5.78053 5.81155 5.94261 6.00698 6.04513 6.10520 6.16530 6.24335 6.26273 6.33281 6.37829 6.43489 6.48021 6.69203 6.74756 6.79825 6.86738 7.08066 7.35668 7.49719 7.83949 8.19999 8.49579 8.70051 9.08880 9.63747 11.11619 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032600 B = 0.005691 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.686276 B = 4918.876294 C = 5141.052554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.679 5.679 11 C 0.085 3.915 12 H 0.031 0.969 13 C -0.102 4.102 14 C -0.104 4.104 15 C -0.073 4.073 16 H 0.057 0.943 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.074 4.074 22 H 0.083 0.917 23 C -0.112 4.112 24 H 0.261 0.739 25 H 0.027 0.973 26 H -0.017 1.017 27 H 0.326 0.674 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 -15.225 1.756 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.310 5.310 11 C -0.026 4.026 12 H 0.049 0.951 13 C -0.141 4.141 14 C -0.142 4.142 15 C -0.092 4.092 16 H 0.075 0.925 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.093 4.093 22 H 0.101 0.899 23 C -0.150 4.150 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.001 0.999 27 H 0.143 0.857 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.770 -15.088 2.442 17.146 hybrid contribution -0.062 0.925 -0.939 1.319 sum 7.707 -14.163 1.503 16.195 Atomic orbital electron populations 1.69959 1.06069 1.26770 1.51048 1.24984 0.94844 0.99281 0.95465 0.86570 0.79430 0.82840 0.78594 1.21397 1.20208 1.20339 1.21164 0.93414 0.90358 1.50125 0.92126 1.19567 0.90634 0.87463 0.95534 1.60683 1.20870 1.00876 1.48556 1.21429 0.95067 0.90759 0.95339 0.95137 1.21448 0.97295 0.99537 0.95777 1.21427 0.96049 0.99848 0.96828 1.21074 0.95140 0.98373 0.94597 0.92487 1.21586 0.96165 0.99024 0.98428 1.21518 0.99110 0.98791 0.96067 1.21514 0.97432 1.01214 0.95419 1.21619 0.95881 0.99126 0.98657 1.21056 0.95190 0.98982 0.94028 0.89866 1.21752 0.96305 0.98502 0.98431 0.92947 0.95478 0.99927 0.85673 0.92036 0.93467 0.89935 0.93681 0.91768 0.92566 0.92512 0.92639 0.92747 0.91968 0.92646 0.92429 0.92530 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.19 5.12 5.24 -4.98 -0.03 5.10 16 10 N -0.68 -14.29 4.81 -107.97 -0.52 -14.81 16 11 C 0.08 1.51 2.82 -67.69 -0.19 1.32 16 12 H 0.03 0.59 7.80 -51.93 -0.41 0.19 16 13 C -0.10 -1.72 5.53 -26.73 -0.15 -1.87 16 14 C -0.10 -1.61 5.05 -26.73 -0.13 -1.75 16 15 C -0.07 -0.97 1.99 -90.62 -0.18 -1.15 16 16 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 18 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 19 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 20 C -0.12 -1.32 5.20 -26.73 -0.14 -1.46 16 21 C -0.07 -1.00 1.83 -90.62 -0.17 -1.17 16 22 H 0.08 1.30 7.48 -51.93 -0.39 0.91 16 23 C -0.11 -1.62 4.59 -26.71 -0.12 -1.75 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.77 7.43 -51.93 -0.39 0.39 16 26 H -0.02 -0.48 8.06 -51.93 -0.42 -0.90 16 27 H 0.33 6.69 8.18 -39.29 -0.32 6.37 16 28 H 0.06 1.17 7.45 -51.93 -0.39 0.78 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.50 7.60 -51.93 -0.39 1.10 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.80 8.12 -51.93 -0.42 0.37 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -28.91 308.99 -9.87 -38.78 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.74 Total: 1.33 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.98 Total: -20.42 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.22 Total: -41.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.91 -9.87 -38.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035009900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.182 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds