Wall clock time and date at job start Sun Mar 29 2020 21:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99813 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47256 * 34.99938 * 11 10 9 13 13 C 1.52995 * 109.47238 * 274.99652 * 11 10 9 14 14 C 1.53001 * 109.47205 * 300.00263 * 13 11 10 15 15 C 1.53001 * 109.47369 * 300.00228 * 14 13 11 16 16 H 1.09005 * 109.46610 * 300.00189 * 15 14 13 17 17 C 1.52995 * 109.47597 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47273 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.46944 * 60.00287 * 18 17 15 20 20 C 1.53001 * 109.47205 * 299.99847 * 19 18 17 21 21 C 1.53002 * 109.47045 * 60.00215 * 20 19 18 22 22 H 1.09000 * 109.47555 * 59.99900 * 21 20 19 23 23 C 1.53001 * 109.47045 * 179.97438 * 21 20 19 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.00905 * 110.99587 * 303.95108 * 10 9 7 28 28 H 1.09000 * 109.47077 * 60.00151 * 13 11 10 29 29 H 1.09000 * 109.46958 * 180.02562 * 13 11 10 30 30 H 1.09005 * 109.47108 * 59.99472 * 14 13 11 31 31 H 1.08999 * 109.47503 * 180.02562 * 14 13 11 32 32 H 1.09000 * 109.47101 * 300.00167 * 17 15 14 33 33 H 1.09001 * 109.46689 * 59.99793 * 17 15 14 34 34 H 1.08991 * 109.47331 * 300.00437 * 18 17 15 35 35 H 1.09003 * 109.47001 * 180.02562 * 18 17 15 36 36 H 1.08993 * 109.47344 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47481 * 59.99632 * 19 18 17 38 38 H 1.09000 * 109.47026 * 299.99791 * 20 19 18 39 39 H 1.08999 * 109.47503 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.47108 * 60.00314 * 23 21 20 41 41 H 1.08997 * 109.47516 * 300.00304 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5050 -4.9071 0.0001 12 1 0.5916 -4.8252 -0.5891 13 6 1.1519 -5.2951 1.4373 14 6 2.4340 -5.4099 2.2642 15 6 3.3399 -6.4816 1.6546 16 1 2.8202 -7.4398 1.6550 17 6 4.6223 -6.5961 2.4811 18 6 5.5279 -7.6682 1.8717 19 6 5.8806 -7.2811 0.4342 20 6 4.5982 -7.1666 -0.3924 21 6 3.6926 -6.0944 0.2169 22 1 4.2123 -5.1363 0.2158 23 6 2.4105 -5.9795 -0.6100 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 0.8898 26 1 0.6239 -2.5567 -0.8903 27 1 2.8403 -3.5488 -0.7820 28 1 0.5066 -4.5315 1.8716 29 1 0.6326 -6.2534 1.4377 30 1 2.9538 -4.4517 2.2637 31 1 2.1826 -5.6868 3.2880 32 1 5.1418 -5.6378 2.4803 33 1 4.3710 -6.8723 3.5051 34 1 5.0082 -8.6263 1.8728 35 1 6.4413 -7.7501 2.4609 36 1 6.5260 -8.0446 0.0002 37 1 6.4003 -6.3229 0.4330 38 1 4.0785 -8.1248 -0.3913 39 1 4.8494 -6.8903 -1.4165 40 1 1.8906 -6.9376 -0.6093 41 1 2.6621 -5.7036 -1.6340 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035009900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:42 Heat of formation + Delta-G solvation = -61.821351 kcal Electronic energy + Delta-G solvation = -17733.575397 eV Core-core repulsion = 15224.243848 eV Total energy + Delta-G solvation = -2509.331549 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83329 -37.62111 -35.29312 -33.77167 -32.91515 -30.40587 -29.48769 -27.59429 -24.27896 -23.84478 -22.68727 -22.45132 -20.56486 -19.91562 -18.48513 -16.75121 -16.45460 -16.02174 -15.83471 -15.44895 -15.03705 -14.69799 -14.49755 -14.29208 -13.93176 -13.48968 -13.27480 -13.18281 -12.77205 -12.70390 -12.49302 -12.28120 -12.24995 -12.07458 -11.90605 -11.65717 -11.62709 -11.42701 -11.22755 -11.13611 -10.67668 -10.54179 -10.39744 -9.00942 -8.22270 -6.33391 1.39644 1.43436 1.51430 2.39532 3.10790 3.56662 3.79209 3.84491 3.90247 4.17694 4.20872 4.33057 4.42409 4.51855 4.63086 4.66754 4.70454 4.77277 4.81894 4.83192 4.97373 4.98993 5.02834 5.13661 5.17061 5.23361 5.27485 5.30297 5.33221 5.36566 5.47872 5.50753 5.54946 5.59525 5.64490 5.67847 5.87567 6.05678 6.51794 6.77379 6.93402 7.37757 8.89242 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032600 B = 0.005691 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.686276 B = 4918.876294 C = 5141.052554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.282 1.282 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.670 5.670 11 C 0.079 3.921 12 H 0.012 0.988 13 C -0.101 4.101 14 C -0.099 4.099 15 C -0.068 4.068 16 H 0.072 0.928 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.110 4.110 21 C -0.071 4.071 22 H 0.057 0.943 23 C -0.103 4.103 24 H 0.264 0.736 25 H -0.004 1.004 26 H -0.047 1.047 27 H 0.330 0.670 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.591 -16.659 1.762 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.208 1.208 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.301 5.301 11 C -0.031 4.031 12 H 0.030 0.970 13 C -0.139 4.139 14 C -0.137 4.137 15 C -0.086 4.086 16 H 0.091 0.909 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.147 4.147 21 C -0.090 4.090 22 H 0.076 0.924 23 C -0.141 4.141 24 H 0.073 0.927 25 H 0.014 0.986 26 H -0.030 1.030 27 H 0.148 0.852 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.521 -16.546 2.446 19.246 hybrid contribution -0.658 1.339 -0.927 1.757 sum 8.863 -15.206 1.519 17.666 Atomic orbital electron populations 1.70099 1.07863 1.27971 1.51660 1.25962 0.95758 1.03394 0.94638 0.85390 0.78105 0.77682 0.79140 1.20780 1.19374 1.19066 1.21522 0.93721 0.91494 1.50416 0.91838 1.19174 0.90614 0.89159 0.92585 1.60577 1.19864 1.01031 1.48660 1.21581 0.94959 0.90261 0.96274 0.97047 1.21445 0.97796 0.99722 0.94979 1.21363 0.95439 0.99290 0.97606 1.21035 0.95427 0.97823 0.94324 0.90926 1.21562 0.95616 0.99039 0.98858 1.21498 0.99301 0.98425 0.95837 1.21521 0.97122 1.01328 0.95591 1.21568 0.95843 0.98612 0.98720 1.21003 0.94807 0.98805 0.94377 0.92413 1.21698 0.96191 0.97886 0.98339 0.92691 0.98554 1.02973 0.85229 0.95329 0.90765 0.93210 0.92434 0.93367 0.91723 0.91362 0.91485 0.90961 0.93012 0.91307 0.92168 0.90274 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.53 -31.19 9.32 25.60 0.24 -30.95 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.79 5.24 85.55 0.45 12.24 16 10 N -0.67 -29.39 4.81 -495.50 -2.39 -31.77 16 11 C 0.08 2.89 2.82 44.93 0.13 3.02 16 12 H 0.01 0.46 7.80 -2.39 -0.02 0.44 16 13 C -0.10 -3.45 5.53 30.59 0.17 -3.28 16 14 C -0.10 -3.06 5.05 30.59 0.15 -2.91 16 15 C -0.07 -1.67 1.99 -10.79 -0.02 -1.69 16 16 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 17 C -0.11 -2.48 5.20 30.59 0.16 -2.32 16 18 C -0.11 -2.00 5.92 30.59 0.18 -1.81 16 19 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 20 C -0.11 -2.21 5.20 30.60 0.16 -2.05 16 21 C -0.07 -1.83 1.83 -10.79 -0.02 -1.85 16 22 H 0.06 1.79 7.48 -2.39 -0.02 1.77 16 23 C -0.10 -2.86 4.59 30.61 0.14 -2.72 16 24 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 25 H 0.00 -0.22 7.43 -2.38 -0.02 -0.24 16 26 H -0.05 -2.85 8.06 -2.39 -0.02 -2.87 16 27 H 0.33 13.95 8.18 -89.69 -0.73 13.21 16 28 H 0.03 1.13 7.45 -2.39 -0.02 1.11 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.86 7.60 -2.38 -0.02 1.84 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 Total: -1.00 -63.90 308.99 2.54 -61.36 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.23 Total: 16.70 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 2.38 Total: -35.81 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -2.10 Total: -89.45 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -63.90 2.54 -61.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035009900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.462 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds