Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99936 * 2 1 4 4 H 1.48497 * 109.46989 * 239.99971 * 3 2 1 5 5 H 1.48505 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47277 * 119.99883 * 3 2 1 7 7 C 1.37878 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00510 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47251 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47159 * 179.97438 * 10 9 7 12 12 C 1.46847 * 110.99816 * 66.04366 * 11 10 9 13 13 C 1.53035 * 109.56886 * 185.82287 * 12 11 10 14 14 C 1.53139 * 109.29453 * 300.90908 * 13 12 11 15 15 C 1.53087 * 109.11674 * 57.56589 * 14 13 12 16 16 H 1.09008 * 109.45563 * 62.04901 * 15 14 13 17 17 C 1.52914 * 109.56976 * 182.08303 * 15 14 13 18 18 C 1.52996 * 109.55483 * 60.18874 * 17 15 14 19 19 C 1.53015 * 109.42811 * 59.94360 * 18 17 15 20 20 C 1.52979 * 109.39795 * 299.81758 * 19 18 17 21 21 C 1.46906 * 111.00131 * 190.13435 * 11 10 9 22 22 H 1.08999 * 109.46060 * 54.04191 * 21 11 10 23 23 H 0.96993 * 119.99975 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47234 * 59.99293 * 9 7 2 25 25 H 1.09004 * 109.46870 * 300.00066 * 9 7 2 26 26 H 1.09001 * 109.46878 * 59.99594 * 10 9 7 27 27 H 1.09006 * 109.46560 * 300.00020 * 10 9 7 28 28 H 1.09005 * 109.45652 * 65.79909 * 12 11 10 29 29 H 1.08995 * 109.45673 * 305.85559 * 12 11 10 30 30 H 1.09007 * 109.49878 * 180.96498 * 13 12 11 31 31 H 1.09002 * 109.49867 * 60.85687 * 13 12 11 32 32 H 1.08999 * 109.53203 * 297.67513 * 14 13 12 33 33 H 1.08994 * 109.53066 * 177.45668 * 14 13 12 34 34 H 1.09001 * 109.45673 * 300.16860 * 17 15 14 35 35 H 1.08993 * 109.44741 * 180.20494 * 17 15 14 36 36 H 1.08998 * 109.47959 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.47561 * 299.95950 * 18 17 15 38 38 H 1.09004 * 109.47292 * 59.87683 * 19 18 17 39 39 H 1.09000 * 109.47210 * 179.88979 * 19 18 17 40 40 H 1.09004 * 109.53661 * 300.16207 * 20 19 18 41 41 H 1.08999 * 109.42645 * 180.17943 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 0.7652 -5.1120 -1.2514 13 6 -0.0996 -6.3713 -1.1589 14 6 0.7988 -7.5841 -0.9001 15 6 1.5988 -7.3506 0.3841 16 1 0.9134 -7.2540 1.2262 17 6 2.5378 -8.5332 0.6247 18 6 3.5045 -8.6675 -0.5536 19 6 4.3249 -7.3829 -0.6878 20 6 3.3838 -6.2025 -0.9353 21 6 2.4168 -6.0652 0.2425 22 1 2.9804 -5.8899 1.1589 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 1.4662 -5.2132 -2.0800 29 1 0.1268 -4.2448 -1.4201 30 1 -0.6394 -6.5115 -2.0954 31 1 -0.8115 -6.2644 -0.3404 32 1 1.4841 -7.7153 -1.7375 33 1 0.1830 -8.4765 -0.7886 34 1 1.9527 -9.4479 0.7203 35 1 3.1037 -8.3666 1.5412 36 1 4.1735 -9.5105 -0.3806 37 1 2.9390 -8.8351 -1.4703 38 1 4.8885 -7.2141 0.2298 39 1 5.0152 -7.4786 -1.5259 40 1 2.8185 -6.3729 -1.8516 41 1 3.9681 -5.2877 -1.0342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035174421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = -28.722847 kcal Electronic energy + Delta-G solvation = -17900.898997 eV Core-core repulsion = 15393.002707 eV Total energy + Delta-G solvation = -2507.896290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23391 -35.91176 -33.67229 -32.67656 -30.36803 -29.96917 -28.24524 -25.11505 -23.77063 -22.32575 -22.17155 -21.19579 -19.48081 -17.65758 -16.49308 -15.59992 -15.23229 -15.08063 -14.45062 -14.15946 -13.64239 -13.50220 -13.05190 -12.74478 -12.53545 -12.34928 -12.11131 -11.96389 -11.78577 -11.16842 -11.10097 -10.90719 -10.89017 -10.62600 -10.55295 -10.29449 -10.15706 -9.92871 -9.76151 -9.60412 -9.19938 -9.07296 -8.28818 -7.52753 -5.96137 -3.98353 3.35314 3.39588 3.41996 4.39897 4.56015 4.71865 4.81854 5.00850 5.15328 5.26942 5.32192 5.39072 5.40017 5.50601 5.56554 5.66602 5.71515 5.83814 5.86051 5.94289 6.03103 6.05498 6.09637 6.14427 6.22910 6.25423 6.32079 6.39288 6.45867 6.52925 6.57373 6.65607 6.77483 7.04792 7.61590 7.69262 7.87805 7.97106 8.14349 8.48194 9.08922 9.64950 11.15231 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040769 B = 0.005607 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.624630 B = 4992.863142 C = 5404.348295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.531 5.531 12 C 0.051 3.949 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.078 4.078 16 H 0.075 0.925 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.113 4.113 20 C -0.156 4.156 21 C 0.091 3.909 22 H 0.075 0.925 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.028 0.972 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 -17.054 -1.725 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.254 5.254 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.097 4.097 16 H 0.093 0.907 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.195 4.195 21 C -0.018 4.018 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.813 -16.895 -1.333 17.371 hybrid contribution 1.090 1.005 -0.687 1.635 sum 4.903 -15.889 -2.020 16.751 Atomic orbital electron populations 1.69964 1.06005 1.26617 1.50704 1.24984 0.94813 0.99100 0.95360 0.86673 0.79587 0.83250 0.78561 1.20343 1.21281 1.20251 1.21170 0.92909 0.91149 1.50816 0.92938 1.19094 0.93998 0.90120 0.97695 1.22302 0.96741 0.88481 0.98772 1.62255 1.26875 1.02089 1.34194 1.22115 0.96712 0.98291 0.90603 1.21592 0.98073 0.94392 1.01359 1.21697 0.98121 0.97697 0.97766 1.21104 0.96604 0.93617 0.98349 0.90658 1.21525 0.97392 0.97938 0.98200 1.21574 0.97929 0.97279 0.98977 1.21454 0.97607 0.94805 1.01265 1.22262 0.98388 0.98303 1.00503 1.21662 0.91979 0.90953 0.97195 0.90715 0.92987 0.96543 0.95814 0.92369 0.96181 0.95380 0.89839 0.92255 0.91336 0.91982 0.92621 0.92215 0.92080 0.92581 0.91914 0.92196 0.92610 0.91471 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.75 4.91 -27.88 -0.14 0.61 16 10 C 0.06 1.38 4.36 -3.82 -0.02 1.36 16 11 N -0.53 -9.84 4.61 -226.65 -1.04 -10.89 16 12 C 0.05 0.88 4.99 -3.83 -0.02 0.86 16 13 C -0.12 -1.65 6.09 -26.64 -0.16 -1.81 16 14 C -0.12 -1.42 4.70 -26.61 -0.13 -1.55 16 15 C -0.08 -1.01 2.61 -90.61 -0.24 -1.24 16 16 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 17 C -0.11 -1.20 5.45 -26.78 -0.15 -1.34 16 18 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 19 C -0.11 -1.29 5.92 -26.73 -0.16 -1.44 16 20 C -0.16 -2.17 4.25 -26.74 -0.11 -2.28 16 21 C 0.09 1.39 2.21 -67.69 -0.15 1.24 16 22 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.46 6.44 -51.93 -0.33 0.12 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 27 H 0.02 0.43 6.97 -51.93 -0.36 0.07 16 28 H 0.03 0.48 6.16 -51.93 -0.32 0.16 16 29 H 0.08 1.65 6.22 -51.93 -0.32 1.33 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.75 4.84 -51.93 -0.25 0.50 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.64 6.41 -51.93 -0.33 0.31 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.96 4.77 -51.93 -0.25 0.71 16 41 H 0.06 0.97 6.79 -51.93 -0.35 0.62 16 LS Contribution 296.53 15.07 4.47 4.47 Total: -1.00 -29.54 296.53 -9.81 -39.35 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.12 Total: -2.66 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -1.83 Total: -20.68 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.31 Total: -37.35 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.54 -9.81 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035174421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.626 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds