Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99936 * 2 1 4 4 H 1.48497 * 109.46989 * 239.99971 * 3 2 1 5 5 H 1.48505 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47277 * 119.99883 * 3 2 1 7 7 C 1.37878 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00510 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47251 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47159 * 179.97438 * 10 9 7 12 12 C 1.46847 * 110.99816 * 66.04366 * 11 10 9 13 13 C 1.53035 * 109.56886 * 185.82287 * 12 11 10 14 14 C 1.53139 * 109.29453 * 300.90908 * 13 12 11 15 15 C 1.53087 * 109.11674 * 57.56589 * 14 13 12 16 16 H 1.09008 * 109.45563 * 62.04901 * 15 14 13 17 17 C 1.52914 * 109.56976 * 182.08303 * 15 14 13 18 18 C 1.52996 * 109.55483 * 60.18874 * 17 15 14 19 19 C 1.53015 * 109.42811 * 59.94360 * 18 17 15 20 20 C 1.52979 * 109.39795 * 299.81758 * 19 18 17 21 21 C 1.46906 * 111.00131 * 190.13435 * 11 10 9 22 22 H 1.08999 * 109.46060 * 54.04191 * 21 11 10 23 23 H 0.96993 * 119.99975 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47234 * 59.99293 * 9 7 2 25 25 H 1.09004 * 109.46870 * 300.00066 * 9 7 2 26 26 H 1.09001 * 109.46878 * 59.99594 * 10 9 7 27 27 H 1.09006 * 109.46560 * 300.00020 * 10 9 7 28 28 H 1.09005 * 109.45652 * 65.79909 * 12 11 10 29 29 H 1.08995 * 109.45673 * 305.85559 * 12 11 10 30 30 H 1.09007 * 109.49878 * 180.96498 * 13 12 11 31 31 H 1.09002 * 109.49867 * 60.85687 * 13 12 11 32 32 H 1.08999 * 109.53203 * 297.67513 * 14 13 12 33 33 H 1.08994 * 109.53066 * 177.45668 * 14 13 12 34 34 H 1.09001 * 109.45673 * 300.16860 * 17 15 14 35 35 H 1.08993 * 109.44741 * 180.20494 * 17 15 14 36 36 H 1.08998 * 109.47959 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.47561 * 299.95950 * 18 17 15 38 38 H 1.09004 * 109.47292 * 59.87683 * 19 18 17 39 39 H 1.09000 * 109.47210 * 179.88979 * 19 18 17 40 40 H 1.09004 * 109.53661 * 300.16207 * 20 19 18 41 41 H 1.08999 * 109.42645 * 180.17943 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 0.7652 -5.1120 -1.2514 13 6 -0.0996 -6.3713 -1.1589 14 6 0.7988 -7.5841 -0.9001 15 6 1.5988 -7.3506 0.3841 16 1 0.9134 -7.2540 1.2262 17 6 2.5378 -8.5332 0.6247 18 6 3.5045 -8.6675 -0.5536 19 6 4.3249 -7.3829 -0.6878 20 6 3.3838 -6.2025 -0.9353 21 6 2.4168 -6.0652 0.2425 22 1 2.9804 -5.8899 1.1589 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 1.4662 -5.2132 -2.0800 29 1 0.1268 -4.2448 -1.4201 30 1 -0.6394 -6.5115 -2.0954 31 1 -0.8115 -6.2644 -0.3404 32 1 1.4841 -7.7153 -1.7375 33 1 0.1830 -8.4765 -0.7886 34 1 1.9527 -9.4479 0.7203 35 1 3.1037 -8.3666 1.5412 36 1 4.1735 -9.5105 -0.3806 37 1 2.9390 -8.8351 -1.4703 38 1 4.8885 -7.2141 0.2298 39 1 5.0152 -7.4786 -1.5259 40 1 2.8185 -6.3729 -1.8516 41 1 3.9681 -5.2877 -1.0342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035174421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = -45.874574 kcal Electronic energy + Delta-G solvation = -17901.642751 eV Core-core repulsion = 15393.002707 eV Total energy + Delta-G solvation = -2508.640045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42265 -37.26358 -35.32141 -34.33937 -31.88985 -31.18818 -29.69962 -26.82351 -25.27227 -23.52748 -23.44718 -22.48271 -21.00118 -18.76464 -18.61980 -16.83513 -16.64170 -16.44315 -16.24427 -15.46684 -15.02166 -14.74558 -14.36820 -14.09590 -13.89435 -13.68147 -13.60542 -13.34625 -13.01628 -12.82240 -12.76616 -12.47520 -12.17435 -12.03024 -11.85846 -11.72684 -11.53655 -11.36125 -11.18516 -11.02471 -10.80830 -10.71397 -10.50813 -9.01924 -8.20768 -6.32631 1.38595 1.42232 1.50218 2.39399 3.09691 3.12165 3.70263 3.80705 3.95751 4.07561 4.24193 4.29523 4.30350 4.42444 4.45016 4.49580 4.59388 4.64374 4.70060 4.75602 4.87858 4.92410 4.96227 5.02608 5.06817 5.16545 5.18368 5.23014 5.25829 5.32812 5.36816 5.43986 5.48779 5.53299 5.66343 5.69087 5.79660 6.13649 6.37219 6.42889 6.84216 7.36404 8.91277 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040769 B = 0.005607 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.624630 B = 4992.863142 C = 5404.348295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.038 3.962 10 C 0.083 3.917 11 N -0.545 5.545 12 C 0.052 3.948 13 C -0.112 4.112 14 C -0.109 4.109 15 C -0.076 4.076 16 H 0.063 0.937 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.150 4.150 21 C 0.088 3.912 22 H 0.066 0.934 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.011 1.011 26 H 0.056 0.944 27 H 0.019 0.981 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 -18.700 -2.066 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.001 3.999 10 C -0.045 4.045 11 N -0.268 5.268 12 C -0.076 4.076 13 C -0.149 4.149 14 C -0.146 4.146 15 C -0.094 4.094 16 H 0.082 0.918 17 C -0.145 4.145 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.189 4.189 21 C -0.020 4.020 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.007 0.993 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.152 -18.566 -1.673 19.340 hybrid contribution 0.632 1.516 -0.571 1.739 sum 5.783 -17.050 -2.244 18.144 Atomic orbital electron populations 1.70109 1.07855 1.27863 1.51324 1.25969 0.95750 1.03323 0.94524 0.85478 0.78271 0.77957 0.79192 1.19165 1.20629 1.19126 1.21593 0.93424 0.92365 1.51135 0.92371 1.18910 0.94175 0.92031 0.94821 1.21893 0.95304 0.88767 0.98497 1.62179 1.27633 1.01955 1.35032 1.22088 0.96568 0.98691 0.90247 1.21573 0.97765 0.93607 1.01996 1.21678 0.98026 0.97357 0.97548 1.21100 0.96724 0.93243 0.98374 0.91833 1.21502 0.97160 0.97299 0.98554 1.21569 0.97954 0.96991 0.98848 1.21444 0.97324 0.94234 1.01784 1.22178 0.98302 0.98785 0.99613 1.21781 0.92128 0.90721 0.97388 0.91577 0.92721 0.98865 0.99270 0.92593 0.96331 0.94991 0.93426 0.90403 0.92396 0.91188 0.90175 0.90245 0.91968 0.90520 0.91467 0.92112 0.91502 0.91633 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.29 13.29 21.45 0.28 -58.00 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -32.35 9.11 25.60 0.23 -32.11 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 2.13 4.91 29.85 0.15 2.28 16 10 C 0.08 3.74 4.36 86.30 0.38 4.12 16 11 N -0.54 -20.86 4.61 -870.97 -4.01 -24.88 16 12 C 0.05 1.86 4.99 86.32 0.43 2.29 16 13 C -0.11 -3.08 6.09 30.65 0.19 -2.90 16 14 C -0.11 -2.41 4.70 30.67 0.14 -2.27 16 15 C -0.08 -1.82 2.61 -10.79 -0.03 -1.85 16 16 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 17 C -0.11 -1.93 5.45 30.56 0.17 -1.76 16 18 C -0.12 -1.93 5.65 30.60 0.17 -1.76 16 19 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 20 C -0.15 -4.04 4.25 30.59 0.13 -3.91 16 21 C 0.09 2.65 2.21 44.92 0.10 2.75 16 22 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 23 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 24 H -0.01 -0.41 6.44 -2.39 -0.02 -0.43 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H 0.06 2.51 7.98 -2.39 -0.02 2.49 16 27 H 0.02 0.83 6.97 -2.38 -0.02 0.82 16 28 H 0.03 1.11 6.16 -2.38 -0.01 1.09 16 29 H 0.05 2.02 6.22 -2.39 -0.01 2.00 16 30 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.48 4.84 -2.39 -0.01 1.47 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.09 6.41 -2.39 -0.02 1.08 16 38 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.78 4.77 -2.38 -0.01 1.77 16 41 H 0.04 1.28 6.79 -2.39 -0.02 1.27 16 Total: -1.00 -65.53 296.53 1.98 -63.55 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.98 Total: 8.67 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 2.70 Total: -36.58 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -3.73 Total: -82.88 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.53 1.98 -63.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035174421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.675 kcal (2) G-P(sol) polarization free energy of solvation -65.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds