Wall clock time and date at job start Sun Mar 29 2020 21:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46898 * 111.00513 * 2 1 4 4 C 1.53006 * 109.47006 * 293.95181 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47055 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00258 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99506 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00308 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47155 * 59.99584 * 10 8 6 12 12 H 1.48503 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46879 * 299.99587 * 10 8 6 14 14 C 1.46900 * 111.00120 * 123.95606 * 2 1 3 15 15 C 1.50703 * 109.47234 * 66.03866 * 14 2 1 16 16 C 1.39874 * 126.03613 * 90.02844 * 15 14 2 17 17 N 1.30842 * 108.19716 * 179.97438 * 16 15 14 18 18 N 1.40075 * 108.20900 * 359.97438 * 17 16 15 19 19 C 1.46505 * 126.03826 * 180.02562 * 18 17 16 20 20 C 1.34951 * 107.92899 * 359.75924 * 18 17 16 21 21 H 1.09008 * 109.47294 * 59.99701 * 1 2 3 22 22 H 1.08994 * 109.47718 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47181 * 300.00759 * 1 2 3 24 24 H 1.09001 * 109.47062 * 173.95435 * 3 2 1 25 25 H 1.08993 * 109.47084 * 53.94882 * 3 2 1 26 26 H 1.09001 * 109.46801 * 300.00064 * 4 3 2 27 27 H 1.09001 * 109.46998 * 59.99660 * 4 3 2 28 28 H 1.08996 * 109.46952 * 300.00302 * 5 4 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 30 30 H 0.96999 * 119.99910 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47821 * 186.04187 * 14 2 1 32 32 H 1.09003 * 109.46887 * 306.04174 * 14 2 1 33 33 H 1.07994 * 125.90235 * 359.97438 * 16 15 14 34 34 H 1.08994 * 109.47082 * 89.97570 * 19 18 17 35 35 H 1.09006 * 109.47097 * 209.97514 * 19 18 17 36 36 H 1.08995 * 109.46989 * 329.97212 * 19 18 17 37 37 H 1.07999 * 126.13335 * 180.24400 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1794 3.4859 -1.3181 6 6 1.8204 4.1618 -2.6163 7 1 1.2582 3.6259 -3.3667 8 6 2.2107 5.4640 -2.8466 9 7 2.8959 6.1163 -1.9330 10 14 1.7664 6.3015 -4.4561 11 1 0.2892 6.3383 -4.6037 12 1 2.2980 7.6881 -4.4558 13 1 2.3583 5.5442 -5.5881 14 6 1.9954 -0.7660 1.1375 15 6 1.6367 -2.2204 0.9729 16 6 2.4061 -3.1888 0.3196 17 7 1.7679 -4.3292 0.3836 18 7 0.5709 -4.1224 1.0811 19 6 -0.4407 -5.1398 1.3777 20 6 0.5167 -2.8217 1.4368 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 3.0798 1.3442 0.1082 25 1 1.5611 1.9273 0.8308 26 1 2.0659 1.5014 -2.1492 27 1 0.5473 2.0844 -1.4266 28 1 1.7448 4.0416 -0.4872 29 1 3.2637 3.4591 -1.2097 30 1 3.1701 7.0326 -2.0948 31 1 3.0796 -0.6613 1.1756 32 1 1.5611 -0.3872 2.0628 33 1 3.3618 -3.0238 -0.1555 34 1 -0.2139 -5.6095 2.3348 35 1 -1.4237 -4.6713 1.4268 36 1 -0.4372 -5.8954 0.5923 37 1 -0.2792 -2.3454 1.9900 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042225280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:03 Heat of formation + Delta-G solvation = 50.543312 kcal Electronic energy + Delta-G solvation = -16211.152340 eV Core-core repulsion = 13603.152945 eV Total energy + Delta-G solvation = -2607.999395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.10474 -38.67309 -35.72182 -34.24609 -33.30780 -31.39315 -28.81610 -28.59660 -26.96869 -25.25892 -23.04493 -21.94786 -21.41717 -20.97033 -18.45238 -17.62305 -16.81925 -16.54744 -16.27296 -15.86616 -15.47640 -15.18504 -14.98783 -14.29497 -13.96929 -13.69528 -13.61232 -13.40714 -13.22262 -13.04161 -12.66148 -12.58084 -12.43461 -12.25929 -12.20887 -11.52853 -11.38509 -11.31298 -11.06878 -10.52095 -10.30925 -9.40907 -9.05579 -8.17950 -6.28782 0.97246 1.40976 1.44344 1.52235 1.73715 1.83023 2.42862 3.14886 3.27771 3.72159 3.99179 4.15598 4.27520 4.34295 4.37581 4.46375 4.54326 4.67833 4.70685 4.71996 4.79610 4.88830 4.93301 5.03879 5.09431 5.15999 5.21172 5.32728 5.55290 5.71622 5.79268 5.89398 6.16907 6.19576 6.29331 6.33749 6.77485 6.88048 7.40140 8.93768 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.057675 B = 0.003640 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.366024 B = 7691.266582 C = 7789.109890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.549 5.549 3 C 0.069 3.931 4 C -0.089 4.089 5 C 0.027 3.973 6 C -0.544 4.544 7 H 0.057 0.943 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.135 3.865 15 C -0.240 4.240 16 C 0.054 3.946 17 N -0.337 5.337 18 N -0.382 5.382 19 C 0.093 3.907 20 C 0.065 3.935 21 H 0.056 0.944 22 H 0.075 0.925 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.048 0.952 28 H -0.009 1.009 29 H -0.008 1.008 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.189 0.811 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -19.910 9.257 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.273 5.273 3 C -0.059 4.059 4 C -0.127 4.127 5 C -0.011 4.011 6 C -0.582 4.582 7 H 0.075 0.925 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.007 3.993 15 C -0.251 4.251 16 C -0.132 4.132 17 N -0.160 5.160 18 N -0.164 5.164 19 C -0.046 4.046 20 C -0.083 4.083 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.206 0.794 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.217 -21.361 8.591 24.128 hybrid contribution -0.193 2.003 0.163 2.019 sum -7.410 -19.358 8.754 22.501 Atomic orbital electron populations 1.22371 0.87331 1.01869 1.00481 1.61980 1.08513 1.13023 1.43776 1.22018 0.99663 0.87545 0.96684 1.21394 0.99635 0.95211 0.96506 1.18963 0.94705 0.92175 0.95265 1.21682 1.35010 0.98360 1.03179 0.92453 1.25979 0.94947 0.98270 1.00626 1.70088 1.39305 1.11766 1.36220 0.85513 0.78919 0.77312 0.79378 1.19155 1.20708 1.19261 1.20286 1.00159 0.87872 0.91022 1.20007 0.98148 0.96576 1.10416 1.24023 1.00725 0.89825 0.98609 1.77281 0.96066 1.24145 1.18468 1.48798 1.16648 1.08451 1.42498 1.22172 0.88923 0.90468 1.03072 1.22756 1.00072 0.84840 1.00614 0.92559 0.90635 0.95238 0.91261 0.95446 0.93383 0.93323 0.99042 0.98934 0.92755 0.90120 0.93574 0.79428 0.89484 0.86906 0.89375 0.78353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.09 127.69 1.16 1.89 16 2 N -0.55 -16.28 4.75 -927.06 -4.41 -20.69 16 3 C 0.07 2.40 4.96 86.31 0.43 2.83 16 4 C -0.09 -3.85 5.08 30.60 0.16 -3.69 16 5 C 0.03 1.44 4.97 29.85 0.15 1.58 16 6 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 7 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 9 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 10 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.13 3.26 5.45 85.56 0.47 3.72 16 15 C -0.24 -5.53 4.98 -20.14 -0.10 -5.63 16 16 C 0.05 1.34 11.96 85.24 1.02 2.36 16 17 N -0.34 -8.74 12.58 -57.02 -0.72 -9.45 16 18 N -0.38 -7.50 4.01 -369.55 -1.48 -8.98 16 19 C 0.09 0.92 11.47 127.77 1.47 2.39 16 20 C 0.06 1.21 9.94 83.54 0.83 2.04 16 21 H 0.06 1.65 6.47 -2.38 -0.02 1.64 16 22 H 0.08 1.73 6.11 -2.39 -0.01 1.72 16 23 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.07 2.42 7.93 -2.39 -0.02 2.40 16 25 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 2.05 6.55 -2.39 -0.02 2.03 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.08 1.93 7.93 -2.39 -0.02 1.91 16 32 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 33 H 0.19 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -71.35 308.36 3.00 -68.36 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.02 Total: 4.84 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 6.27 Total: -23.72 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -6.32 Total: -96.52 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -71.35 3.00 -68.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042225280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.901 kcal (2) G-P(sol) polarization free energy of solvation -71.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds