Wall clock time and date at job start Sun Mar 29 2020 21:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48497 * 109.47224 * 270.00061 * 3 2 1 5 5 H 1.48501 * 109.47107 * 30.00207 * 3 2 1 6 6 H 1.48503 * 109.47023 * 149.99804 * 3 2 1 7 7 C 1.37871 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00569 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47607 * 175.72950 * 9 7 2 11 11 C 1.46903 * 111.00160 * 158.18630 * 10 9 7 12 12 C 1.52996 * 109.46977 * 198.74894 * 11 10 9 13 13 C 1.53002 * 109.47034 * 181.40495 * 12 11 10 14 14 C 1.53001 * 109.47315 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46830 * 60.00639 * 14 13 12 16 16 C 1.53002 * 109.46650 * 299.99769 * 15 14 13 17 17 C 1.53000 * 109.47526 * 60.00204 * 16 15 14 18 18 C 1.46894 * 111.00142 * 282.14718 * 10 9 7 19 19 C 1.53002 * 117.50239 * 139.26158 * 18 10 9 20 20 C 1.52999 * 117.50145 * 70.63676 * 18 10 9 21 21 H 0.96992 * 120.00238 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46602 * 55.72970 * 9 7 2 23 23 H 1.09006 * 109.47439 * 295.73507 * 9 7 2 24 24 H 1.08993 * 109.47112 * 318.75003 * 11 10 9 25 25 H 1.08996 * 109.46582 * 78.75198 * 11 10 9 26 26 H 1.09003 * 109.47653 * 301.40416 * 12 11 10 27 27 H 1.09002 * 109.47354 * 300.00442 * 13 12 11 28 28 H 1.09004 * 109.46673 * 60.00268 * 13 12 11 29 29 H 1.08992 * 109.47520 * 300.00536 * 14 13 12 30 30 H 1.08998 * 109.46961 * 179.97438 * 14 13 12 31 31 H 1.08992 * 109.47171 * 180.02562 * 15 14 13 32 32 H 1.08994 * 109.47429 * 59.99207 * 15 14 13 33 33 H 1.09002 * 109.47354 * 299.99912 * 16 15 14 34 34 H 1.09000 * 109.47010 * 180.02562 * 16 15 14 35 35 H 1.08994 * 109.47337 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47043 * 59.99517 * 17 16 15 37 37 H 1.09005 * 115.54996 * 284.96313 * 18 10 9 38 38 H 1.08998 * 117.49755 * 359.97438 * 19 18 10 39 39 H 1.09000 * 117.50374 * 145.02089 * 19 18 10 40 40 H 1.09001 * 117.49506 * 214.98306 * 20 18 10 41 41 H 1.09001 * 117.50211 * 359.97438 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2024 -3.6137 -0.1043 11 6 1.6097 -4.8603 0.3985 12 6 2.7217 -5.8622 0.7152 13 6 2.1028 -7.1727 1.2057 14 6 3.2148 -8.1750 1.5218 15 6 4.1239 -7.6015 2.6106 16 6 4.7427 -6.2910 2.1201 17 6 3.6308 -5.2887 1.8039 18 6 2.6754 -3.7753 -1.4856 19 6 4.1586 -4.0892 -1.6923 20 6 3.6143 -2.7024 -2.0409 21 1 -0.4850 0.8400 0.0004 22 1 0.5681 -2.5242 -0.8495 23 1 0.6834 -2.5910 0.9254 24 1 1.0395 -4.6521 1.3038 25 1 0.9480 -5.2794 -0.3594 26 1 3.3074 -6.0514 -0.1844 27 1 1.5170 -6.9837 2.1053 28 1 1.4555 -7.5816 0.4298 29 1 3.8002 -8.3640 0.6220 30 1 2.7739 -9.1084 1.8716 31 1 4.9163 -8.3152 2.8355 32 1 3.5385 -7.4124 3.5104 33 1 5.3282 -6.4800 1.2203 34 1 5.3908 -5.8826 2.8956 35 1 4.0717 -4.3550 1.4550 36 1 3.0454 -5.0997 2.7038 37 1 1.9639 -4.2279 -2.1763 38 1 4.7834 -4.1754 -0.8034 39 1 4.4230 -4.7485 -2.5191 40 1 3.5206 -2.4494 -3.0970 41 1 3.8807 -1.8764 -1.3815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042248240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:13 Heat of formation + Delta-G solvation = 0.767753 kcal Electronic energy + Delta-G solvation = -17729.696531 eV Core-core repulsion = 15223.079050 eV Total energy + Delta-G solvation = -2506.617482 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.77624 -37.05920 -33.67962 -32.61201 -30.68153 -30.40754 -26.95456 -24.26931 -22.36195 -22.15040 -21.52921 -20.93940 -19.47385 -19.12401 -16.47913 -15.21347 -14.87112 -14.62434 -14.57549 -14.05006 -13.85165 -13.70878 -13.18555 -12.50104 -12.19804 -11.94438 -11.76431 -11.67709 -11.38222 -11.13952 -10.88321 -10.85245 -10.75896 -10.64347 -10.54601 -10.11862 -10.00623 -9.73584 -9.68178 -9.44559 -9.11683 -9.00237 -8.35461 -7.19633 -5.96411 -3.96131 3.34246 3.40635 3.44314 4.44829 4.63093 4.78620 4.90909 5.00963 5.07747 5.37781 5.43193 5.51377 5.66820 5.70986 5.76193 5.77869 5.79123 5.83762 5.85039 6.03426 6.11192 6.17910 6.22962 6.25764 6.31943 6.37452 6.41621 6.48078 6.50107 6.63719 6.72988 6.90332 6.96680 7.05103 7.28770 7.44249 7.91203 8.19159 8.29533 8.62049 9.10534 9.66608 11.14217 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.006186 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.068860 B = 4525.244180 C = 4640.911385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.494 4.494 8 H 0.066 0.934 9 C 0.195 3.805 10 N -0.507 5.507 11 C 0.063 3.937 12 C -0.077 4.077 13 C -0.115 4.115 14 C -0.116 4.116 15 C -0.118 4.118 16 C -0.120 4.120 17 C -0.103 4.103 18 C 0.029 3.971 19 C -0.184 4.184 20 C -0.157 4.157 21 H 0.259 0.741 22 H -0.005 1.005 23 H 0.024 0.976 24 H 0.065 0.935 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.756 -13.332 1.222 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.532 4.532 8 H 0.084 0.916 9 C 0.071 3.929 10 N -0.231 5.231 11 C -0.065 4.065 12 C -0.096 4.096 13 C -0.153 4.153 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.157 4.157 17 C -0.140 4.140 18 C -0.081 4.081 19 C -0.222 4.222 20 C -0.194 4.194 21 H 0.069 0.931 22 H 0.013 0.987 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.989 -13.079 1.529 14.908 hybrid contribution -0.471 0.755 -0.562 1.052 sum 6.518 -12.324 0.967 13.975 Atomic orbital electron populations 1.69955 1.06029 1.26551 1.51680 1.24980 0.94806 0.99142 0.95852 0.86577 0.79841 0.83497 0.77985 1.20806 1.21411 1.19830 1.21217 0.93459 0.89686 1.48874 0.91582 1.19723 0.89800 0.87518 0.95906 1.61845 1.40638 1.03878 1.16717 1.22084 0.94715 0.90894 0.98835 1.21102 0.96715 0.93235 0.98572 1.21583 0.97394 0.95591 1.00778 1.21492 0.97250 0.97808 0.98764 1.21533 0.98559 0.97120 0.98368 1.21571 0.98220 0.95504 1.00443 1.21428 0.96056 0.98553 0.98008 1.22067 0.91196 1.03633 0.91194 1.23013 0.97336 0.99750 1.02130 1.23054 1.02790 0.93162 1.00415 0.93097 0.98701 0.95845 0.91671 0.96187 0.91332 0.92241 0.92634 0.92341 0.92730 0.92869 0.92286 0.92496 0.92658 0.90244 0.92807 0.91681 0.88929 0.90480 0.90335 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.49 -13.61 7.95 -34.44 -0.27 -13.88 16 8 H 0.07 1.80 5.86 -52.49 -0.31 1.49 16 9 C 0.20 5.06 4.78 -4.98 -0.02 5.03 16 10 N -0.51 -10.71 3.79 -228.09 -0.86 -11.58 16 11 C 0.06 1.15 4.42 -3.82 -0.02 1.13 16 12 C -0.08 -1.15 2.16 -90.62 -0.20 -1.35 16 13 C -0.12 -1.46 5.20 -26.73 -0.14 -1.60 16 14 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 15 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 16 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 17 C -0.10 -1.55 5.06 -26.73 -0.14 -1.68 16 18 C 0.03 0.56 4.41 -67.71 -0.30 0.26 16 19 C -0.18 -3.06 9.34 -26.73 -0.25 -3.31 16 20 C -0.16 -3.01 9.53 -26.73 -0.25 -3.26 16 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.00 -0.14 7.97 -51.93 -0.41 -0.55 16 23 H 0.02 0.65 7.57 -51.93 -0.39 0.26 16 24 H 0.06 1.22 7.60 -51.93 -0.39 0.83 16 25 H 0.02 0.36 7.98 -51.93 -0.41 -0.05 16 26 H 0.07 1.05 6.74 -51.93 -0.35 0.70 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.38 7.55 -51.93 -0.39 0.99 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 38 H 0.09 1.55 8.05 -51.93 -0.42 1.13 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.11 2.47 5.61 -51.93 -0.29 2.17 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -28.41 314.90 -10.14 -38.55 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.58 Total: -0.38 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.16 Total: -21.82 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.13 Total: -37.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.41 -10.14 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042248240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.322 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds