Wall clock time and date at job start Sun Mar 29 2020 21:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48497 * 109.47224 * 270.00061 * 3 2 1 5 5 H 1.48501 * 109.47107 * 30.00207 * 3 2 1 6 6 H 1.48503 * 109.47023 * 149.99804 * 3 2 1 7 7 C 1.37871 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00569 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47607 * 175.72950 * 9 7 2 11 11 C 1.46903 * 111.00160 * 158.18630 * 10 9 7 12 12 C 1.52996 * 109.46977 * 198.74894 * 11 10 9 13 13 C 1.53002 * 109.47034 * 181.40495 * 12 11 10 14 14 C 1.53001 * 109.47315 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46830 * 60.00639 * 14 13 12 16 16 C 1.53002 * 109.46650 * 299.99769 * 15 14 13 17 17 C 1.53000 * 109.47526 * 60.00204 * 16 15 14 18 18 C 1.46894 * 111.00142 * 282.14718 * 10 9 7 19 19 C 1.53002 * 117.50239 * 139.26158 * 18 10 9 20 20 C 1.52999 * 117.50145 * 70.63676 * 18 10 9 21 21 H 0.96992 * 120.00238 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46602 * 55.72970 * 9 7 2 23 23 H 1.09006 * 109.47439 * 295.73507 * 9 7 2 24 24 H 1.08993 * 109.47112 * 318.75003 * 11 10 9 25 25 H 1.08996 * 109.46582 * 78.75198 * 11 10 9 26 26 H 1.09003 * 109.47653 * 301.40416 * 12 11 10 27 27 H 1.09002 * 109.47354 * 300.00442 * 13 12 11 28 28 H 1.09004 * 109.46673 * 60.00268 * 13 12 11 29 29 H 1.08992 * 109.47520 * 300.00536 * 14 13 12 30 30 H 1.08998 * 109.46961 * 179.97438 * 14 13 12 31 31 H 1.08992 * 109.47171 * 180.02562 * 15 14 13 32 32 H 1.08994 * 109.47429 * 59.99207 * 15 14 13 33 33 H 1.09002 * 109.47354 * 299.99912 * 16 15 14 34 34 H 1.09000 * 109.47010 * 180.02562 * 16 15 14 35 35 H 1.08994 * 109.47337 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47043 * 59.99517 * 17 16 15 37 37 H 1.09005 * 115.54996 * 284.96313 * 18 10 9 38 38 H 1.08998 * 117.49755 * 359.97438 * 19 18 10 39 39 H 1.09000 * 117.50374 * 145.02089 * 19 18 10 40 40 H 1.09001 * 117.49506 * 214.98306 * 20 18 10 41 41 H 1.09001 * 117.50211 * 359.97438 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2024 -3.6137 -0.1043 11 6 1.6097 -4.8603 0.3985 12 6 2.7217 -5.8622 0.7152 13 6 2.1028 -7.1727 1.2057 14 6 3.2148 -8.1750 1.5218 15 6 4.1239 -7.6015 2.6106 16 6 4.7427 -6.2910 2.1201 17 6 3.6308 -5.2887 1.8039 18 6 2.6754 -3.7753 -1.4856 19 6 4.1586 -4.0892 -1.6923 20 6 3.6143 -2.7024 -2.0409 21 1 -0.4850 0.8400 0.0004 22 1 0.5681 -2.5242 -0.8495 23 1 0.6834 -2.5910 0.9254 24 1 1.0395 -4.6521 1.3038 25 1 0.9480 -5.2794 -0.3594 26 1 3.3074 -6.0514 -0.1844 27 1 1.5170 -6.9837 2.1053 28 1 1.4555 -7.5816 0.4298 29 1 3.8002 -8.3640 0.6220 30 1 2.7739 -9.1084 1.8716 31 1 4.9163 -8.3152 2.8355 32 1 3.5385 -7.4124 3.5104 33 1 5.3282 -6.4800 1.2203 34 1 5.3908 -5.8826 2.8956 35 1 4.0717 -4.3550 1.4550 36 1 3.0454 -5.0997 2.7038 37 1 1.9639 -4.2279 -2.1763 38 1 4.7834 -4.1754 -0.8034 39 1 4.4230 -4.7485 -2.5191 40 1 3.5206 -2.4494 -3.0970 41 1 3.8807 -1.8764 -1.3815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042248240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:13 Heat of formation + Delta-G solvation = -13.868690 kcal Electronic energy + Delta-G solvation = -17730.331215 eV Core-core repulsion = 15223.079050 eV Total energy + Delta-G solvation = -2507.252166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09264 -38.43983 -35.37541 -34.50141 -32.09310 -31.48103 -28.86429 -25.78381 -24.14023 -23.37574 -22.96738 -22.18362 -20.86688 -20.42210 -18.53571 -16.77845 -16.47415 -16.25506 -16.01220 -15.36374 -14.98128 -14.86728 -14.64954 -14.31000 -13.83609 -13.42496 -13.15177 -12.94888 -12.91181 -12.75068 -12.50939 -12.42870 -12.29238 -11.90868 -11.77739 -11.74328 -11.33597 -11.21935 -10.99502 -10.85001 -10.78254 -10.57172 -10.51789 -8.96451 -8.14747 -6.22657 1.41079 1.42020 1.53170 2.41980 3.07158 3.16646 3.27209 3.83414 3.98201 4.03575 4.20011 4.27516 4.28913 4.40752 4.54984 4.63440 4.65190 4.73350 4.75788 4.77421 4.87580 4.91782 4.95067 4.95775 5.12642 5.16244 5.21415 5.27586 5.35495 5.38054 5.40708 5.43409 5.49535 5.54518 5.70576 5.74030 5.77898 6.13345 6.47151 6.69803 6.92931 7.45365 8.95916 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.006186 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.068860 B = 4525.244180 C = 4640.911385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.500 4.500 8 H 0.068 0.932 9 C 0.210 3.790 10 N -0.506 5.506 11 C 0.062 3.938 12 C -0.065 4.065 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.100 4.100 18 C 0.002 3.998 19 C -0.141 4.141 20 C -0.172 4.172 21 H 0.261 0.739 22 H -0.039 1.039 23 H -0.005 1.005 24 H 0.049 0.951 25 H 0.019 0.981 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -14.746 0.946 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.084 3.916 10 N -0.230 5.230 11 C -0.066 4.066 12 C -0.084 4.084 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.138 4.138 18 C -0.107 4.107 19 C -0.179 4.179 20 C -0.209 4.209 21 H 0.070 0.930 22 H -0.021 1.021 23 H 0.013 0.987 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.127 -14.517 1.252 17.193 hybrid contribution -1.165 1.163 -0.481 1.715 sum 7.961 -13.354 0.771 15.566 Atomic orbital electron populations 1.70095 1.07746 1.27538 1.52808 1.25872 0.95620 1.02971 0.95419 0.85478 0.78638 0.78764 0.78341 1.19896 1.21134 1.18873 1.21491 0.93619 0.90491 1.48258 0.91374 1.19374 0.89784 0.89473 0.92923 1.61812 1.39054 1.03863 1.18302 1.22188 0.96051 0.90496 0.97881 1.21002 0.95419 0.93288 0.98721 1.21563 0.98147 0.94713 1.00692 1.21478 0.96546 0.97755 0.99101 1.21533 0.99072 0.96615 0.98184 1.21524 0.97213 0.95453 1.01016 1.21356 0.96778 0.98341 0.97309 1.22189 0.93053 1.05293 0.90146 1.23031 0.94135 0.97840 1.02862 1.23017 1.03671 0.93554 1.00643 0.93005 1.02146 0.98730 0.93280 0.96267 0.91013 0.92674 0.92073 0.91681 0.90966 0.90853 0.92555 0.91822 0.92137 0.92997 0.94088 0.91741 0.88768 0.87019 0.88921 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.50 -28.39 7.95 25.60 0.20 -28.18 16 8 H 0.07 3.78 5.86 -2.91 -0.02 3.77 16 9 C 0.21 11.48 4.78 85.56 0.41 11.89 16 10 N -0.51 -22.06 3.79 -875.55 -3.31 -25.38 16 11 C 0.06 2.31 4.42 86.30 0.38 2.69 16 12 C -0.07 -1.90 2.16 -10.79 -0.02 -1.92 16 13 C -0.11 -2.67 5.20 30.60 0.16 -2.52 16 14 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 15 C -0.12 -2.23 5.92 30.60 0.18 -2.05 16 16 C -0.11 -2.59 5.92 30.59 0.18 -2.41 16 17 C -0.10 -2.96 5.06 30.59 0.15 -2.80 16 18 C 0.00 0.09 4.41 44.92 0.20 0.29 16 19 C -0.14 -4.35 9.34 30.60 0.29 -4.06 16 20 C -0.17 -6.46 9.53 30.59 0.29 -6.17 16 21 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 22 H -0.04 -2.37 7.97 -2.39 -0.02 -2.38 16 23 H -0.01 -0.32 7.57 -2.38 -0.02 -0.33 16 24 H 0.05 1.95 7.60 -2.39 -0.02 1.93 16 25 H 0.02 0.71 7.98 -2.39 -0.02 0.69 16 26 H 0.07 2.05 6.74 -2.39 -0.02 2.04 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.81 7.55 -2.39 -0.02 1.79 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 2.51 8.09 -2.38 -0.02 2.50 16 38 H 0.09 2.92 8.05 -2.39 -0.02 2.90 16 39 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.09 3.81 5.61 -2.39 -0.01 3.79 16 Total: -1.00 -62.87 314.90 3.02 -59.85 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.96 Total: 12.83 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 3.07 Total: -36.81 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -3.03 Total: -82.83 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -62.87 3.02 -59.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042248240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.977 kcal (2) G-P(sol) polarization free energy of solvation -62.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds