Wall clock time and date at job start Sun Mar 29 2020 21:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.46960 * 2 1 4 4 C 1.46902 * 111.00046 * 297.54138 * 3 2 1 5 5 C 1.50696 * 109.47211 * 292.79609 * 4 3 2 6 6 H 1.08002 * 119.99601 * 354.98605 * 5 4 3 7 7 C 1.37870 * 120.00312 * 174.98726 * 5 4 3 8 8 N 1.31523 * 119.99958 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00346 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47390 * 89.99831 * 9 7 5 11 11 H 1.48504 * 109.47285 * 210.00129 * 9 7 5 12 12 H 1.48500 * 109.47191 * 329.99795 * 9 7 5 13 13 C 1.46905 * 111.00102 * 61.49470 * 3 2 1 14 14 C 1.52997 * 109.47086 * 66.04430 * 13 3 2 15 15 C 1.52995 * 109.47196 * 180.02562 * 14 13 3 16 16 N 1.46506 * 109.47336 * 180.02562 * 15 14 13 17 17 C 1.36879 * 126.39446 * 270.03291 * 16 15 14 18 18 C 1.34678 * 106.81698 * 179.97438 * 17 16 15 19 19 N 1.34127 * 108.01652 * 0.02562 * 18 17 16 20 20 C 1.30492 * 109.25938 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47309 * 59.50837 * 1 2 3 22 22 H 1.09008 * 109.46905 * 179.50483 * 1 2 3 23 23 H 1.08992 * 109.47466 * 299.50318 * 1 2 3 24 24 H 1.08997 * 109.47529 * 239.99855 * 2 1 3 25 25 H 1.09007 * 109.47235 * 119.99667 * 2 1 3 26 26 H 1.09006 * 109.47078 * 52.79850 * 4 3 2 27 27 H 1.09006 * 109.47105 * 172.79436 * 4 3 2 28 28 H 0.97000 * 120.00119 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46937 * 306.04992 * 13 3 2 30 30 H 1.08998 * 109.47432 * 186.04758 * 13 3 2 31 31 H 1.09005 * 109.47285 * 59.99976 * 14 13 3 32 32 H 1.08998 * 109.47253 * 300.00438 * 14 13 3 33 33 H 1.08999 * 109.47636 * 60.00160 * 15 14 13 34 34 H 1.09005 * 109.47339 * 299.99921 * 15 14 13 35 35 H 1.08003 * 126.59307 * 359.97438 * 17 16 15 36 36 H 1.07996 * 125.98644 * 180.25660 * 18 17 16 37 37 H 1.08002 * 125.65128 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5972 2.0927 -1.2160 5 6 2.2904 1.4935 -2.4124 6 1 3.0362 0.7245 -2.2752 7 6 1.9726 1.9269 -3.6820 8 7 1.0640 2.8631 -3.8491 9 14 2.8314 1.1837 -5.1651 10 1 2.0631 0.0064 -5.6435 11 1 2.9123 2.1957 -6.2489 12 1 4.2015 0.7582 -4.7819 13 6 1.5780 2.0995 1.2052 14 6 2.2402 1.4793 2.4372 15 6 1.7798 2.2231 3.6924 16 7 2.4143 1.6296 4.8720 17 6 1.9206 0.6017 5.6292 18 6 2.8167 0.3736 6.6083 19 7 3.8297 1.2390 6.4534 20 6 3.5956 1.9943 5.4154 21 1 -0.3634 0.5214 -0.8855 22 1 -0.3633 -1.0277 -0.0089 23 1 -0.3634 0.5060 0.8943 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 0.5180 1.9970 -1.3357 27 1 1.8615 3.1470 -1.1332 28 1 0.8407 3.1683 -4.7423 29 1 0.4947 2.0217 1.2972 30 1 1.8618 3.1492 1.1298 31 1 3.3236 1.5570 2.3452 32 1 1.9564 0.4296 2.5125 33 1 0.6965 2.1450 3.7843 34 1 2.0634 3.2729 3.6173 35 1 0.9910 0.0749 5.4718 36 1 2.7358 -0.3772 7.3803 37 1 4.2400 2.7807 5.0509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:29 Heat of formation + Delta-G solvation = 60.089274 kcal Electronic energy + Delta-G solvation = -16577.469155 eV Core-core repulsion = 13969.883703 eV Total energy + Delta-G solvation = -2607.585451 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.01860 -37.76345 -34.94794 -32.69697 -31.13585 -29.48776 -29.29252 -26.96906 -24.74499 -23.49165 -21.83077 -21.33986 -20.77621 -19.21443 -17.36281 -16.23989 -15.70721 -15.38278 -14.81594 -14.63973 -14.33811 -13.89599 -13.64520 -13.36196 -13.03081 -12.89630 -12.14489 -11.92754 -11.87183 -11.57598 -11.27214 -10.97155 -10.73949 -10.67913 -10.51658 -10.09939 -10.00400 -9.79292 -9.59231 -9.23006 -8.54881 -8.47582 -7.26872 -6.07043 -4.08208 2.04742 2.77346 3.16149 3.28642 3.35319 3.39706 4.37838 4.56857 4.66342 4.70224 4.86680 5.12460 5.24593 5.28787 5.36754 5.41346 5.57973 5.65895 5.72458 5.85816 5.89396 6.05509 6.18198 6.26958 6.32134 6.42537 6.62829 6.70495 6.83468 7.15573 7.23798 7.36872 7.76538 8.03784 8.05113 8.13048 8.49864 8.99985 9.56358 11.03598 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.047110 B = 0.004271 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.215267 B = 6554.771347 C = 6652.921484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.535 5.535 4 C 0.188 3.812 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.054 3.946 14 C -0.129 4.129 15 C 0.103 3.897 16 N -0.453 5.453 17 C -0.056 4.056 18 C -0.037 4.037 19 N -0.502 5.502 20 C 0.182 3.818 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.003 0.997 27 H 0.024 0.976 28 H 0.261 0.739 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -2.452 14.612 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.258 5.258 4 C 0.063 3.937 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.075 4.075 14 C -0.168 4.168 15 C -0.020 4.020 16 N -0.135 5.135 17 C -0.190 4.190 18 C -0.185 4.185 19 N -0.220 5.220 20 C -0.101 4.101 21 H 0.087 0.913 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.021 0.979 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.255 -2.228 14.837 15.006 hybrid contribution -1.324 -0.362 -1.503 2.035 sum -1.579 -2.590 13.334 13.675 Atomic orbital electron populations 1.22383 0.99464 1.00999 1.01899 1.21992 0.92040 0.91557 1.01338 1.62323 1.59160 1.01913 1.02421 1.19794 0.94835 0.93664 0.85363 1.21144 1.21773 1.21425 0.90107 0.91934 1.24978 0.95307 0.95234 0.99065 1.69955 1.32184 1.29303 1.22495 0.86519 0.80068 0.78766 0.82214 1.20754 1.21260 1.19757 1.21957 0.96746 0.98338 0.90502 1.21975 1.02380 1.00079 0.92332 1.22003 0.98465 0.98406 0.83077 1.45677 1.17932 1.26972 1.22927 1.22740 1.03040 0.96247 0.96949 1.22266 0.92595 1.02245 1.01361 1.70271 1.26812 1.07721 1.17187 1.25000 0.88419 1.02742 0.93922 0.91251 0.93430 0.93804 0.90075 0.93026 0.97886 0.95769 0.92935 0.95195 0.91300 0.90487 0.91353 0.89227 0.88690 0.81196 0.81656 0.78045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 9.26 37.16 0.34 -2.86 16 2 C 0.06 1.09 5.67 -3.83 -0.02 1.07 16 3 N -0.53 -10.76 4.69 -236.07 -1.11 -11.87 16 4 C 0.19 4.67 4.54 -4.98 -0.02 4.65 16 5 C -0.51 -13.82 8.39 -34.44 -0.29 -14.11 16 6 H 0.06 1.71 7.39 -52.49 -0.39 1.32 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.05 0.85 4.74 -3.82 -0.02 0.83 16 14 C -0.13 -1.62 5.46 -26.74 -0.15 -1.77 16 15 C 0.10 1.01 6.15 -4.04 -0.02 0.99 16 16 N -0.45 -5.06 2.75 -118.57 -0.33 -5.38 16 17 C -0.06 -0.61 11.58 -16.56 -0.19 -0.80 16 18 C -0.04 -0.44 11.87 -17.81 -0.21 -0.65 16 19 N -0.50 -7.02 11.25 -14.67 -0.16 -7.19 16 20 C 0.18 2.17 12.56 -90.38 -1.14 1.03 16 21 H 0.07 1.39 6.28 -51.93 -0.33 1.06 16 22 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 23 H 0.04 0.67 6.33 -51.93 -0.33 0.34 16 24 H 0.08 1.66 6.98 -51.93 -0.36 1.30 16 25 H 0.05 0.84 6.40 -51.93 -0.33 0.50 16 26 H 0.00 0.09 6.02 -51.93 -0.31 -0.22 16 27 H 0.02 0.64 7.91 -51.93 -0.41 0.23 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.46 6.06 -51.93 -0.31 0.14 16 30 H 0.07 1.08 7.92 -51.93 -0.41 0.66 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.90 6.52 -51.93 -0.34 0.56 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 301.38 15.07 4.54 4.54 Total: -1.00 -31.05 301.38 -8.78 -39.83 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.62 Total: -0.62 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.81 Total: -10.20 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.86 Total: -49.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.05 -8.78 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.918 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds