Wall clock time and date at job start Sun Mar 29 2020 21:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.46960 * 2 1 4 4 C 1.46902 * 111.00046 * 297.54138 * 3 2 1 5 5 C 1.50696 * 109.47211 * 292.79609 * 4 3 2 6 6 H 1.08002 * 119.99601 * 354.98605 * 5 4 3 7 7 C 1.37870 * 120.00312 * 174.98726 * 5 4 3 8 8 N 1.31523 * 119.99958 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00346 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47390 * 89.99831 * 9 7 5 11 11 H 1.48504 * 109.47285 * 210.00129 * 9 7 5 12 12 H 1.48500 * 109.47191 * 329.99795 * 9 7 5 13 13 C 1.46905 * 111.00102 * 61.49470 * 3 2 1 14 14 C 1.52997 * 109.47086 * 66.04430 * 13 3 2 15 15 C 1.52995 * 109.47196 * 180.02562 * 14 13 3 16 16 N 1.46506 * 109.47336 * 180.02562 * 15 14 13 17 17 C 1.36879 * 126.39446 * 270.03291 * 16 15 14 18 18 C 1.34678 * 106.81698 * 179.97438 * 17 16 15 19 19 N 1.34127 * 108.01652 * 0.02562 * 18 17 16 20 20 C 1.30492 * 109.25938 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47309 * 59.50837 * 1 2 3 22 22 H 1.09008 * 109.46905 * 179.50483 * 1 2 3 23 23 H 1.08992 * 109.47466 * 299.50318 * 1 2 3 24 24 H 1.08997 * 109.47529 * 239.99855 * 2 1 3 25 25 H 1.09007 * 109.47235 * 119.99667 * 2 1 3 26 26 H 1.09006 * 109.47078 * 52.79850 * 4 3 2 27 27 H 1.09006 * 109.47105 * 172.79436 * 4 3 2 28 28 H 0.97000 * 120.00119 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46937 * 306.04992 * 13 3 2 30 30 H 1.08998 * 109.47432 * 186.04758 * 13 3 2 31 31 H 1.09005 * 109.47285 * 59.99976 * 14 13 3 32 32 H 1.08998 * 109.47253 * 300.00438 * 14 13 3 33 33 H 1.08999 * 109.47636 * 60.00160 * 15 14 13 34 34 H 1.09005 * 109.47339 * 299.99921 * 15 14 13 35 35 H 1.08003 * 126.59307 * 359.97438 * 17 16 15 36 36 H 1.07996 * 125.98644 * 180.25660 * 18 17 16 37 37 H 1.08002 * 125.65128 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5972 2.0927 -1.2160 5 6 2.2904 1.4935 -2.4124 6 1 3.0362 0.7245 -2.2752 7 6 1.9726 1.9269 -3.6820 8 7 1.0640 2.8631 -3.8491 9 14 2.8314 1.1837 -5.1651 10 1 2.0631 0.0064 -5.6435 11 1 2.9123 2.1957 -6.2489 12 1 4.2015 0.7582 -4.7819 13 6 1.5780 2.0995 1.2052 14 6 2.2402 1.4793 2.4372 15 6 1.7798 2.2231 3.6924 16 7 2.4143 1.6296 4.8720 17 6 1.9206 0.6017 5.6292 18 6 2.8167 0.3736 6.6083 19 7 3.8297 1.2390 6.4534 20 6 3.5956 1.9943 5.4154 21 1 -0.3634 0.5214 -0.8855 22 1 -0.3633 -1.0277 -0.0089 23 1 -0.3634 0.5060 0.8943 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 0.5180 1.9970 -1.3357 27 1 1.8615 3.1470 -1.1332 28 1 0.8407 3.1683 -4.7423 29 1 0.4947 2.0217 1.2972 30 1 1.8618 3.1492 1.1298 31 1 3.3236 1.5570 2.3452 32 1 1.9564 0.4296 2.5125 33 1 0.6965 2.1450 3.7843 34 1 2.0634 3.2729 3.6173 35 1 0.9910 0.0749 5.4718 36 1 2.7358 -0.3772 7.3803 37 1 4.2400 2.7807 5.0509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:28 Heat of formation + Delta-G solvation = 41.562136 kcal Electronic energy + Delta-G solvation = -16578.272552 eV Core-core repulsion = 13969.883703 eV Total energy + Delta-G solvation = -2608.388848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.86979 -39.24278 -36.01224 -34.68495 -32.28224 -30.96791 -30.27981 -28.59556 -26.06272 -25.12433 -23.22400 -22.19863 -21.64745 -20.68669 -18.39633 -18.19443 -17.05510 -16.69567 -16.24706 -15.96892 -15.51904 -14.90722 -14.80300 -14.64308 -14.30885 -14.09134 -13.69846 -13.31127 -13.13211 -12.96877 -12.86861 -12.57195 -12.53999 -12.24216 -11.97543 -11.84307 -11.31283 -11.21423 -10.90597 -10.59343 -10.50605 -9.39584 -8.89898 -8.19069 -6.27961 1.20354 1.40517 1.41431 1.52768 1.95314 2.27223 2.40685 3.13733 3.33928 3.77433 3.93238 4.00109 4.11582 4.19691 4.30230 4.37125 4.49791 4.54888 4.59860 4.65254 4.75426 4.82178 4.92717 5.01803 5.07910 5.21189 5.25533 5.39978 5.44037 5.52600 5.69022 5.88538 6.10257 6.32981 6.38095 6.71037 6.89244 7.19019 7.41632 8.91124 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.047110 B = 0.004271 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.215267 B = 6554.771347 C = 6652.921484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 N -0.547 5.547 4 C 0.203 3.797 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.055 3.945 14 C -0.113 4.113 15 C 0.110 3.890 16 N -0.455 5.455 17 C -0.053 4.053 18 C -0.060 4.060 19 N -0.540 5.540 20 C 0.172 3.828 21 H 0.031 0.969 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.081 0.919 26 H -0.018 1.018 27 H -0.001 1.001 28 H 0.263 0.737 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.198 0.802 36 H 0.181 0.819 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -3.223 15.345 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.068 4.068 3 N -0.271 5.271 4 C 0.077 3.923 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.192 1.192 13 C -0.074 4.074 14 C -0.151 4.151 15 C -0.012 4.012 16 N -0.136 5.136 17 C -0.187 4.187 18 C -0.207 4.207 19 N -0.259 5.259 20 C -0.111 4.111 21 H 0.050 0.950 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.000 1.000 27 H 0.017 0.983 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.215 0.785 36 H 0.198 0.802 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.457 -3.014 15.594 15.889 hybrid contribution -1.264 -0.131 -1.667 2.096 sum -1.721 -3.145 13.927 14.381 Atomic orbital electron populations 1.22266 0.98276 1.02177 1.01023 1.21992 0.93018 0.90420 1.01400 1.62193 1.59839 1.02759 1.02276 1.19420 0.93206 0.92534 0.87122 1.21459 1.21708 1.21248 0.91425 0.92451 1.25818 0.95954 0.95600 1.02034 1.70069 1.33544 1.30590 1.23227 0.85486 0.79108 0.78097 0.78572 1.19938 1.20818 1.19166 1.22012 0.97552 0.98068 0.89784 1.21758 1.01209 1.00042 0.92106 1.21985 0.99371 0.98647 0.81179 1.45760 1.17777 1.27036 1.23046 1.23197 1.03554 0.95747 0.96168 1.22673 0.92744 1.02750 1.02544 1.70242 1.28157 1.08958 1.18537 1.25467 0.88968 1.02972 0.93648 0.94999 0.91170 0.91721 0.92794 0.90104 0.99996 0.98321 0.92792 0.94302 0.91569 0.91762 0.91468 0.87297 0.87071 0.78516 0.80213 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.83 9.26 71.98 0.67 -5.17 16 2 C 0.06 2.13 5.67 86.30 0.49 2.62 16 3 N -0.55 -21.84 4.69 -900.78 -4.23 -26.07 16 4 C 0.20 10.33 4.54 85.56 0.39 10.71 16 5 C -0.52 -28.88 8.39 25.60 0.21 -28.67 16 6 H 0.06 3.17 7.39 -2.91 -0.02 3.15 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.05 1.63 4.74 86.30 0.41 2.04 16 14 C -0.11 -2.55 5.46 30.59 0.17 -2.38 16 15 C 0.11 1.81 6.15 86.38 0.53 2.34 16 16 N -0.45 -8.93 2.75 -529.05 -1.46 -10.39 16 17 C -0.05 -1.02 11.58 83.09 0.96 -0.06 16 18 C -0.06 -1.36 11.87 83.53 0.99 -0.37 16 19 N -0.54 -14.55 11.25 -200.31 -2.25 -16.80 16 20 C 0.17 3.81 12.56 180.26 2.26 6.08 16 21 H 0.03 1.27 6.28 -2.39 -0.02 1.26 16 22 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.06 1.81 6.33 -2.39 -0.02 1.80 16 24 H 0.05 2.20 6.98 -2.39 -0.02 2.19 16 25 H 0.08 2.42 6.40 -2.38 -0.02 2.40 16 26 H -0.02 -0.96 6.02 -2.38 -0.01 -0.97 16 27 H 0.00 -0.07 7.91 -2.38 -0.02 -0.09 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.90 16 29 H 0.04 1.11 6.06 -2.39 -0.01 1.09 16 30 H 0.07 2.01 7.92 -2.39 -0.02 1.99 16 31 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.07 1.55 6.52 -2.39 -0.02 1.54 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.22 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -67.77 301.38 2.96 -64.82 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.04 Total: 9.58 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 7.55 Total: -12.17 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -7.65 Total: -108.11 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.77 2.96 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.378 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds