Wall clock time and date at job start Sun Mar 29 2020 21:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47665 * 2 1 4 4 C 1.46907 * 111.00100 * 288.00363 * 3 2 1 5 5 C 1.50692 * 109.47379 * 160.36030 * 4 3 2 6 6 H 1.08001 * 120.00284 * 4.64945 * 5 4 3 7 7 C 1.37880 * 120.00078 * 184.65625 * 5 4 3 8 8 N 1.31511 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47032 * 89.99738 * 9 7 5 11 11 H 1.48500 * 109.46968 * 209.99750 * 9 7 5 12 12 H 1.48499 * 109.46956 * 329.99780 * 9 7 5 13 13 C 1.46895 * 111.00157 * 164.04502 * 3 2 1 14 14 C 1.52999 * 109.46942 * 293.95270 * 13 3 2 15 15 N 1.46498 * 109.47082 * 180.02562 * 14 13 3 16 16 C 1.36886 * 126.39580 * 265.02652 * 15 14 13 17 17 C 1.34677 * 106.81724 * 179.97438 * 16 15 14 18 18 N 1.34128 * 108.02022 * 359.97438 * 17 16 15 19 19 C 1.30495 * 109.25451 * 359.72777 * 18 17 16 20 20 C 1.50705 * 125.64848 * 180.28928 * 19 18 17 21 21 H 1.09007 * 109.47069 * 299.46706 * 1 2 3 22 22 H 1.09000 * 109.46946 * 59.46046 * 1 2 3 23 23 H 1.08993 * 109.47966 * 179.46066 * 1 2 3 24 24 H 1.09001 * 109.46780 * 239.99752 * 2 1 3 25 25 H 1.08999 * 109.46622 * 120.00534 * 2 1 3 26 26 H 1.09007 * 109.46524 * 280.35813 * 4 3 2 27 27 H 1.08997 * 109.47234 * 40.35334 * 4 3 2 28 28 H 0.97000 * 120.00188 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47314 * 53.95712 * 13 3 2 30 30 H 1.09009 * 109.47005 * 173.95565 * 13 3 2 31 31 H 1.09004 * 109.47185 * 299.99861 * 14 13 3 32 32 H 1.08996 * 109.47159 * 60.00019 * 14 13 3 33 33 H 1.07999 * 126.59064 * 0.03829 * 16 15 14 34 34 H 1.07993 * 125.98650 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47186 * 270.17158 * 20 19 18 36 36 H 1.08995 * 109.47042 * 30.17484 * 20 19 18 37 37 H 1.09007 * 109.47269 * 150.17445 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7957 2.0226 -1.3043 5 6 1.8471 3.5203 -1.1467 6 1 2.1023 3.9544 -0.1912 7 6 1.5684 4.3367 -2.2223 8 7 1.2580 3.8082 -3.3859 9 14 1.6314 6.1934 -2.0268 10 1 3.0019 6.6770 -2.3321 11 1 0.6646 6.8227 -2.9618 12 1 1.2780 6.5564 -0.6309 13 6 3.4384 1.4416 0.3770 14 6 3.5972 0.9993 1.8330 15 7 5.0119 1.0565 2.2092 16 6 5.9038 0.0186 2.1758 17 6 7.0852 0.5063 2.6002 18 7 6.9194 1.8066 2.8843 19 6 5.6816 2.1445 2.6467 20 6 5.0953 3.5202 2.8337 21 1 -0.3633 0.5056 0.8948 22 1 -0.3633 0.5222 -0.8851 23 1 -0.3635 -1.0275 -0.0097 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 2.5699 1.7038 -2.0023 27 1 0.8181 1.7309 -1.6882 28 1 1.0622 4.3825 -4.1427 29 1 4.0128 0.7778 -0.2691 30 1 3.8034 2.4627 0.2655 31 1 3.0228 1.6632 2.4791 32 1 3.2322 -0.0216 1.9445 33 1 5.6995 -0.9961 1.8674 34 1 8.0051 -0.0516 2.6943 35 1 4.7059 3.6145 3.8474 36 1 5.8692 4.2702 2.6705 37 1 4.2867 3.6709 2.1183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:48 Heat of formation + Delta-G solvation = 57.937554 kcal Electronic energy + Delta-G solvation = -17006.560924 eV Core-core repulsion = 14398.882167 eV Total energy + Delta-G solvation = -2607.678757 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.89611 -37.44008 -34.03806 -32.66929 -31.53747 -30.43741 -28.63477 -26.71081 -25.96694 -22.92619 -22.74261 -21.17534 -19.87456 -19.42995 -16.98480 -16.42583 -15.53742 -15.05734 -14.60919 -14.50249 -14.01816 -13.83311 -13.35006 -13.10228 -12.77744 -12.70075 -12.36346 -12.11393 -12.00130 -11.55444 -11.39194 -11.25396 -10.92415 -10.82104 -10.59404 -10.34412 -9.87853 -9.78275 -9.35373 -9.27594 -8.48983 -8.16807 -7.47304 -6.09079 -4.10958 2.22277 2.96226 3.28139 3.31585 3.34813 3.37942 4.36288 4.66847 4.73629 4.82958 5.06366 5.25166 5.27051 5.46057 5.46667 5.56975 5.57920 5.69087 5.75049 5.94756 5.96181 6.01652 6.06553 6.18096 6.38878 6.44569 6.54370 6.69789 6.93909 7.08023 7.20979 7.38354 7.71059 7.97802 8.04538 8.28922 8.41051 8.95386 9.53535 11.01547 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.007175 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.246019 B = 3901.386056 C = 4897.667983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.532 5.532 4 C 0.192 3.808 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.052 3.948 14 C 0.103 3.897 15 N -0.448 5.448 16 C -0.062 4.062 17 C -0.035 4.035 18 N -0.501 5.501 19 C 0.211 3.789 20 C -0.074 4.074 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.024 0.976 25 H 0.056 0.944 26 H -0.011 1.011 27 H 0.040 0.960 28 H 0.262 0.738 29 H 0.026 0.974 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.165 0.835 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 -7.008 9.885 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.257 5.257 4 C 0.067 3.933 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.077 4.077 14 C -0.020 4.020 15 N -0.130 5.130 16 C -0.195 4.195 17 C -0.183 4.183 18 N -0.220 5.220 19 C -0.051 4.051 20 C -0.132 4.132 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.007 0.993 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.186 0.814 34 H 0.183 0.817 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.833 -6.179 10.293 12.603 hybrid contribution -0.128 -0.238 -1.093 1.125 sum 3.706 -6.417 9.201 11.813 Atomic orbital electron populations 1.21740 0.95152 1.00114 1.03102 1.22091 0.96380 0.90815 0.98983 1.62157 1.14187 1.14327 1.35067 1.19809 0.96658 0.94346 0.82457 1.21115 1.46601 0.90475 0.96391 0.91938 1.24984 0.95319 0.99055 0.95186 1.69946 1.47410 1.35377 1.01059 0.86519 0.77830 0.85144 0.78091 1.20686 1.21219 1.19682 1.22241 0.91127 1.02430 0.91952 1.22082 0.77406 1.03791 0.98692 1.45494 1.10424 1.09041 1.48071 1.22653 0.90968 0.94599 1.11289 1.22197 0.97759 0.91922 1.06412 1.70220 1.15422 1.13772 1.22626 1.23322 0.88433 0.91431 1.01955 1.20254 1.01493 0.88466 1.02985 0.92309 0.91841 0.93527 0.95782 0.92545 0.99323 0.94174 0.92847 0.95577 0.89274 0.88249 0.89440 0.81367 0.81734 0.90471 0.89386 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.99 37.16 0.37 -1.87 16 2 C 0.05 0.75 5.55 -3.83 -0.02 0.73 16 3 N -0.53 -10.48 4.38 -236.08 -1.03 -11.51 16 4 C 0.19 4.75 4.59 -4.98 -0.02 4.73 16 5 C -0.51 -13.66 8.61 -34.44 -0.30 -13.95 16 6 H 0.06 1.65 7.66 -52.49 -0.40 1.25 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.05 0.92 5.11 -3.83 -0.02 0.90 16 14 C 0.10 1.45 5.64 -4.04 -0.02 1.42 16 15 N -0.45 -6.61 2.75 -113.90 -0.31 -6.93 16 16 C -0.06 -0.84 11.58 -16.56 -0.19 -1.03 16 17 C -0.03 -0.50 11.87 -17.81 -0.21 -0.71 16 18 N -0.50 -8.44 11.25 -10.81 -0.12 -8.57 16 19 C 0.21 3.32 7.90 -155.41 -1.23 2.09 16 20 C -0.07 -0.97 10.04 36.01 0.36 -0.60 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.06 1.14 6.52 -51.93 -0.34 0.80 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 25 H 0.06 0.78 5.94 -51.93 -0.31 0.47 16 26 H -0.01 -0.30 8.00 -51.92 -0.42 -0.71 16 27 H 0.04 1.06 6.24 -51.93 -0.32 0.74 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 29 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.09 1.78 6.81 -51.92 -0.35 1.43 16 31 H 0.10 1.36 7.94 -51.93 -0.41 0.95 16 32 H 0.09 1.09 6.28 -51.93 -0.33 0.76 16 33 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.14 7.33 -51.92 -0.38 0.76 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -30.61 304.74 -8.31 -38.93 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.77 Total: -0.40 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.38 Total: -6.84 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.73 Total: -52.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.61 -8.31 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.864 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds