Wall clock time and date at job start Sun Mar 29 2020 21:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47665 * 2 1 4 4 C 1.46907 * 111.00100 * 288.00363 * 3 2 1 5 5 C 1.50692 * 109.47379 * 160.36030 * 4 3 2 6 6 H 1.08001 * 120.00284 * 4.64945 * 5 4 3 7 7 C 1.37880 * 120.00078 * 184.65625 * 5 4 3 8 8 N 1.31511 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47032 * 89.99738 * 9 7 5 11 11 H 1.48500 * 109.46968 * 209.99750 * 9 7 5 12 12 H 1.48499 * 109.46956 * 329.99780 * 9 7 5 13 13 C 1.46895 * 111.00157 * 164.04502 * 3 2 1 14 14 C 1.52999 * 109.46942 * 293.95270 * 13 3 2 15 15 N 1.46498 * 109.47082 * 180.02562 * 14 13 3 16 16 C 1.36886 * 126.39580 * 265.02652 * 15 14 13 17 17 C 1.34677 * 106.81724 * 179.97438 * 16 15 14 18 18 N 1.34128 * 108.02022 * 359.97438 * 17 16 15 19 19 C 1.30495 * 109.25451 * 359.72777 * 18 17 16 20 20 C 1.50705 * 125.64848 * 180.28928 * 19 18 17 21 21 H 1.09007 * 109.47069 * 299.46706 * 1 2 3 22 22 H 1.09000 * 109.46946 * 59.46046 * 1 2 3 23 23 H 1.08993 * 109.47966 * 179.46066 * 1 2 3 24 24 H 1.09001 * 109.46780 * 239.99752 * 2 1 3 25 25 H 1.08999 * 109.46622 * 120.00534 * 2 1 3 26 26 H 1.09007 * 109.46524 * 280.35813 * 4 3 2 27 27 H 1.08997 * 109.47234 * 40.35334 * 4 3 2 28 28 H 0.97000 * 120.00188 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47314 * 53.95712 * 13 3 2 30 30 H 1.09009 * 109.47005 * 173.95565 * 13 3 2 31 31 H 1.09004 * 109.47185 * 299.99861 * 14 13 3 32 32 H 1.08996 * 109.47159 * 60.00019 * 14 13 3 33 33 H 1.07999 * 126.59064 * 0.03829 * 16 15 14 34 34 H 1.07993 * 125.98650 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47186 * 270.17158 * 20 19 18 36 36 H 1.08995 * 109.47042 * 30.17484 * 20 19 18 37 37 H 1.09007 * 109.47269 * 150.17445 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7957 2.0226 -1.3043 5 6 1.8471 3.5203 -1.1467 6 1 2.1023 3.9544 -0.1912 7 6 1.5684 4.3367 -2.2223 8 7 1.2580 3.8082 -3.3859 9 14 1.6314 6.1934 -2.0268 10 1 3.0019 6.6770 -2.3321 11 1 0.6646 6.8227 -2.9618 12 1 1.2780 6.5564 -0.6309 13 6 3.4384 1.4416 0.3770 14 6 3.5972 0.9993 1.8330 15 7 5.0119 1.0565 2.2092 16 6 5.9038 0.0186 2.1758 17 6 7.0852 0.5063 2.6002 18 7 6.9194 1.8066 2.8843 19 6 5.6816 2.1445 2.6467 20 6 5.0953 3.5202 2.8337 21 1 -0.3633 0.5056 0.8948 22 1 -0.3633 0.5222 -0.8851 23 1 -0.3635 -1.0275 -0.0097 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 2.5699 1.7038 -2.0023 27 1 0.8181 1.7309 -1.6882 28 1 1.0622 4.3825 -4.1427 29 1 4.0128 0.7778 -0.2691 30 1 3.8034 2.4627 0.2655 31 1 3.0228 1.6632 2.4791 32 1 3.2322 -0.0216 1.9445 33 1 5.6995 -0.9961 1.8674 34 1 8.0051 -0.0516 2.6943 35 1 4.7059 3.6145 3.8474 36 1 5.8692 4.2702 2.6705 37 1 4.2867 3.6709 2.1183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:48 Heat of formation + Delta-G solvation = 39.174277 kcal Electronic energy + Delta-G solvation = -17007.374560 eV Core-core repulsion = 14398.882167 eV Total energy + Delta-G solvation = -2608.492393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.01202 -38.97208 -35.38278 -34.61798 -32.60333 -31.80965 -30.27125 -27.96767 -27.47833 -24.57711 -24.22739 -22.29260 -21.40353 -20.59095 -18.65014 -17.97301 -16.84213 -16.71437 -16.11490 -15.88063 -15.41567 -15.16701 -14.57754 -14.50649 -14.21371 -13.87195 -13.82380 -13.46268 -13.14970 -13.02761 -12.92445 -12.77162 -12.63184 -12.48556 -12.14047 -12.05815 -11.51217 -11.28879 -10.93531 -10.64139 -10.51261 -9.25991 -9.12782 -8.20573 -6.29977 1.11002 1.41646 1.41835 1.53246 1.84371 2.19069 2.39969 3.11139 3.26250 3.64782 3.68057 3.95752 3.97141 4.19094 4.31690 4.39375 4.47783 4.51929 4.70097 4.71549 4.72899 4.78591 4.90122 4.97732 5.00714 5.11257 5.21769 5.26198 5.39937 5.44297 5.65552 5.88535 6.05457 6.22165 6.31117 6.56652 6.84862 7.16888 7.39473 8.90148 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.007175 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.246019 B = 3901.386056 C = 4897.667983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.042 3.958 3 N -0.533 5.533 4 C 0.206 3.794 5 C -0.518 4.518 6 H 0.065 0.935 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.059 3.941 14 C 0.118 3.882 15 N -0.453 5.453 16 C -0.058 4.058 17 C -0.053 4.053 18 N -0.532 5.532 19 C 0.192 3.808 20 C -0.071 4.071 21 H 0.063 0.937 22 H 0.029 0.971 23 H 0.078 0.922 24 H 0.015 0.985 25 H 0.096 0.904 26 H -0.045 1.045 27 H 0.018 0.982 28 H 0.263 0.737 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.202 0.798 34 H 0.188 0.812 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.674 -7.614 11.579 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 N -0.258 5.258 4 C 0.080 3.920 5 C -0.556 4.556 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.184 1.184 13 C -0.070 4.070 14 C -0.004 4.004 15 N -0.136 5.136 16 C -0.191 4.191 17 C -0.200 4.200 18 N -0.253 5.253 19 C -0.071 4.071 20 C -0.129 4.129 21 H 0.082 0.918 22 H 0.048 0.952 23 H 0.097 0.903 24 H 0.034 0.966 25 H 0.114 0.886 26 H -0.028 1.028 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.218 0.782 34 H 0.205 0.795 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.794 -6.802 12.014 14.317 hybrid contribution -0.069 -0.133 -1.620 1.627 sum 3.725 -6.935 10.394 13.038 Atomic orbital electron populations 1.21713 0.94501 1.01797 1.01640 1.22263 0.96954 0.88876 1.00420 1.62058 1.15564 1.16491 1.31698 1.19436 0.94255 0.93993 0.84278 1.21467 1.45950 0.91774 0.96450 0.91692 1.25872 0.94967 1.03931 0.94845 1.70073 1.48585 1.37109 1.01906 0.85470 0.77858 0.79323 0.78560 1.20252 1.20937 1.18390 1.22131 0.89605 1.00752 0.94545 1.21926 0.77473 1.05341 0.95677 1.45577 1.10669 1.09233 1.48075 1.23221 0.90346 0.95587 1.09920 1.22702 0.99236 0.91472 1.06617 1.70199 1.16162 1.15214 1.23700 1.23741 0.88571 0.92441 1.02323 1.20291 1.01160 0.87557 1.03895 0.91822 0.95182 0.90268 0.96618 0.88614 1.02751 0.96349 0.92787 0.96512 0.92119 0.87473 0.86727 0.78155 0.79516 0.88487 0.89248 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.99 71.98 0.72 -3.41 16 2 C 0.04 1.32 5.55 86.30 0.48 1.80 16 3 N -0.53 -20.78 4.38 -900.81 -3.95 -24.72 16 4 C 0.21 10.54 4.59 85.55 0.39 10.93 16 5 C -0.52 -28.37 8.61 25.60 0.22 -28.15 16 6 H 0.06 3.45 7.66 -2.91 -0.02 3.42 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.94 -55.71 13.29 21.45 0.28 -55.43 16 9 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 13 C 0.06 2.05 5.11 86.30 0.44 2.50 16 14 C 0.12 3.02 5.64 86.38 0.49 3.51 16 15 N -0.45 -12.44 2.75 -514.28 -1.42 -13.86 16 16 C -0.06 -1.43 11.58 83.09 0.96 -0.46 16 17 C -0.05 -1.45 11.87 83.53 0.99 -0.46 16 18 N -0.53 -17.43 11.25 -188.13 -2.12 -19.54 16 19 C 0.19 5.81 7.90 138.13 1.09 6.90 16 20 C -0.07 -1.79 10.04 71.24 0.72 -1.08 16 21 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 22 H 0.03 1.08 6.52 -2.39 -0.02 1.06 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.02 0.52 8.05 -2.39 -0.02 0.50 16 25 H 0.10 2.24 5.94 -2.39 -0.01 2.23 16 26 H -0.05 -2.56 8.00 -2.38 -0.02 -2.58 16 27 H 0.02 1.02 6.24 -2.39 -0.01 1.00 16 28 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 30 H 0.06 2.45 6.81 -2.38 -0.02 2.44 16 31 H 0.11 2.63 7.94 -2.39 -0.02 2.62 16 32 H 0.11 2.34 6.28 -2.39 -0.01 2.32 16 33 H 0.20 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.19 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.01 7.33 -2.38 -0.02 2.00 16 Total: -1.00 -67.35 304.74 2.83 -64.52 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.03 Total: 10.80 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 6.96 Total: -7.35 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -7.19 Total: -113.55 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.35 2.83 -64.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.699 kcal (2) G-P(sol) polarization free energy of solvation -67.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds