Wall clock time and date at job start Sun Mar 29 2020 21:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99691 * 2 1 4 4 H 1.48500 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47046 * 299.99975 * 3 2 1 6 6 H 1.48493 * 109.47374 * 60.00103 * 3 2 1 7 7 C 1.37875 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46627 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46971 * 180.02562 * 10 9 7 12 12 C 1.48678 * 111.10554 * 285.41395 * 11 10 9 13 13 C 1.54373 * 104.67155 * 201.09641 * 12 11 10 14 14 C 1.54264 * 105.06392 * 23.77376 * 13 12 11 15 15 C 1.48554 * 111.00041 * 170.00138 * 11 10 9 16 16 H 1.08994 * 110.41557 * 40.13736 * 15 11 10 17 17 C 1.53004 * 110.40940 * 277.81218 * 15 11 10 18 18 C 1.54894 * 110.48128 * 64.89454 * 17 15 11 19 19 C 1.55238 * 102.58338 * 156.67574 * 18 17 15 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 H 0.96998 * 120.00102 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47355 * 59.99973 * 9 7 2 24 24 H 1.09001 * 109.47059 * 299.99536 * 9 7 2 25 25 H 1.08999 * 109.47304 * 59.99906 * 10 9 7 26 26 H 1.09001 * 109.46992 * 299.99540 * 10 9 7 27 27 H 1.09004 * 110.43989 * 82.26224 * 12 11 10 28 28 H 1.08996 * 110.40923 * 319.91890 * 12 11 10 29 29 H 1.09005 * 110.32668 * 264.87718 * 13 12 11 30 30 H 1.09002 * 110.32586 * 142.66684 * 13 12 11 31 31 H 1.09000 * 110.32745 * 241.10300 * 14 13 12 32 32 H 1.08999 * 110.40779 * 118.93793 * 14 13 12 33 33 H 1.09002 * 110.43542 * 302.35302 * 17 15 11 34 34 H 1.08996 * 110.75388 * 275.05927 * 18 17 15 35 35 H 1.08993 * 110.76071 * 38.44153 * 18 17 15 36 36 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 37 37 H 1.09006 * 110.46947 * 80.77225 * 19 18 17 38 38 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 39 39 H 1.09003 * 110.02805 * 142.89578 * 20 19 18 40 40 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 41 41 H 1.08995 * 110.03881 * 119.28625 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 0.9225 -5.2134 1.3377 13 6 0.6825 -6.7383 1.3486 14 6 1.6728 -7.3074 0.3117 15 6 2.4279 -6.0782 -0.2384 16 1 3.3641 -5.9345 0.3009 17 6 2.6957 -6.2428 -1.7358 18 6 3.4575 -5.0126 -2.2885 19 6 4.1505 -5.5846 -3.5543 20 6 4.5766 -7.0090 -3.1425 21 6 3.6516 -7.4274 -1.9863 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6038 0.8922 26 1 2.8727 -3.6046 -0.8878 27 1 -0.0202 -4.6794 1.4577 28 1 1.6205 -4.9328 2.1265 29 1 -0.3431 -6.9623 1.0551 30 1 0.8924 -7.1476 2.3368 31 1 1.1334 -7.8106 -0.4907 32 1 2.3690 -7.9967 0.7894 33 1 1.7601 -6.3866 -2.2762 34 1 2.7631 -4.2149 -2.5524 35 1 4.1966 -4.6606 -1.5690 36 1 5.0233 -4.9857 -3.8147 37 1 3.4498 -5.6222 -4.3885 38 1 5.6141 -7.0064 -2.8086 39 1 4.4561 -7.6924 -3.9831 40 1 4.2402 -7.6280 -1.0911 41 1 3.0823 -8.3139 -2.2656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044352417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:34 Heat of formation + Delta-G solvation = -23.261855 kcal Electronic energy + Delta-G solvation = -17624.867801 eV Core-core repulsion = 15117.208317 eV Total energy + Delta-G solvation = -2507.659484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40463 -36.85292 -33.66702 -31.86404 -30.41143 -28.58262 -28.24727 -26.08279 -24.33229 -21.70500 -20.84112 -20.05115 -19.70226 -19.15459 -16.43734 -15.85247 -15.56353 -14.92791 -14.41869 -14.11808 -13.58815 -13.28268 -13.19368 -12.77049 -12.33126 -12.13838 -11.86073 -11.52314 -11.25133 -11.07162 -10.99001 -10.93521 -10.68089 -10.59146 -10.45380 -10.41503 -10.35501 -10.13605 -10.06353 -9.60677 -9.18453 -9.04637 -8.29297 -7.78253 -5.95780 -3.97942 3.32879 3.40229 3.44163 4.39974 4.53294 4.74542 4.81335 4.97322 5.07868 5.13538 5.30784 5.40098 5.48274 5.60102 5.68960 5.75965 5.78186 5.82504 5.91801 5.94067 6.01805 6.03294 6.09020 6.12173 6.24049 6.27677 6.33101 6.40499 6.47095 6.53521 6.56694 6.62026 6.73412 7.08695 7.49670 7.60192 7.83436 7.96074 8.14748 8.48910 9.10116 9.65565 11.15655 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.006649 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.758102 B = 4210.138405 C = 5184.180234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.032 3.968 10 C 0.037 3.963 11 N -0.503 5.503 12 C 0.036 3.964 13 C -0.125 4.125 14 C -0.117 4.117 15 C 0.067 3.933 16 H 0.043 0.957 17 C -0.072 4.072 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.118 4.118 22 H 0.259 0.741 23 H 0.023 0.977 24 H 0.013 0.987 25 H 0.017 0.983 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.923 -15.330 -2.345 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.090 4.090 11 N -0.227 5.227 12 C -0.092 4.092 13 C -0.163 4.163 14 C -0.155 4.155 15 C -0.042 4.042 16 H 0.061 0.939 17 C -0.091 4.091 18 C -0.158 4.158 19 C -0.164 4.164 20 C -0.161 4.161 21 C -0.156 4.156 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.372 -15.155 -2.758 16.313 hybrid contribution 1.076 1.004 0.743 1.649 sum 6.448 -14.150 -2.015 15.680 Atomic orbital electron populations 1.69991 1.06002 1.26352 1.50925 1.24992 0.94803 0.99106 0.95422 0.86575 0.80103 0.83986 0.77563 1.19804 1.20998 1.21071 1.21248 0.92951 0.91146 1.50484 0.92860 1.19007 0.93911 0.90041 0.97618 1.22852 0.97261 0.89039 0.99882 1.65398 1.29035 1.01847 1.26426 1.23059 1.00483 0.94757 0.90910 1.22307 0.99770 0.95805 0.98410 1.22312 0.97774 0.96977 0.98445 1.22662 0.94735 0.91649 0.95155 0.93858 1.21885 0.98315 0.94274 0.94662 1.22780 0.99031 0.97802 0.96188 1.22455 1.00024 0.95569 0.98398 1.22119 0.99108 0.96942 0.97918 1.22176 0.97352 0.97989 0.98092 0.93121 0.95858 0.96887 0.96462 0.90304 0.90061 0.94444 0.91402 0.92112 0.91342 0.92201 0.90247 0.90094 0.91631 0.92067 0.91843 0.92320 0.92382 0.92165 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.84 5.09 -27.88 -0.14 0.70 16 10 C 0.04 0.79 4.57 -3.82 -0.02 0.77 16 11 N -0.50 -9.40 5.01 -222.04 -1.11 -10.51 16 12 C 0.04 0.62 5.92 -2.12 -0.01 0.61 16 13 C -0.12 -1.69 7.00 -25.35 -0.18 -1.87 16 14 C -0.12 -1.51 6.10 -25.34 -0.15 -1.66 16 15 C 0.07 1.01 1.83 -66.07 -0.12 0.89 16 16 H 0.04 0.68 7.99 -51.93 -0.42 0.27 16 17 C -0.07 -1.01 2.48 -88.96 -0.22 -1.23 16 18 C -0.12 -1.79 4.40 -24.55 -0.11 -1.90 16 19 C -0.13 -1.56 6.84 -24.88 -0.17 -1.73 16 20 C -0.12 -1.33 6.80 -25.62 -0.17 -1.51 16 21 C -0.12 -1.34 5.92 -25.62 -0.15 -1.49 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.01 0.36 7.48 -51.93 -0.39 -0.02 16 25 H 0.02 0.38 7.77 -51.93 -0.40 -0.03 16 26 H 0.08 1.65 3.82 -51.93 -0.20 1.45 16 27 H 0.08 1.51 7.86 -51.93 -0.41 1.10 16 28 H 0.04 0.65 7.76 -51.93 -0.40 0.25 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.84 7.86 -51.93 -0.41 0.44 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.39 7.19 -51.93 -0.37 1.02 16 35 H 0.07 1.02 7.27 -51.93 -0.38 0.64 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.67 7.84 -51.93 -0.41 0.26 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 311.01 15.07 4.69 4.69 Total: -1.00 -29.96 311.01 -10.12 -40.09 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.55 Total: -2.51 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -1.86 Total: -22.09 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.38 Total: -37.08 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.96 -10.12 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044352417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.825 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds