Wall clock time and date at job start Sun Mar 29 2020 21:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99691 * 2 1 4 4 H 1.48500 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47046 * 299.99975 * 3 2 1 6 6 H 1.48493 * 109.47374 * 60.00103 * 3 2 1 7 7 C 1.37875 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46627 * 180.02562 * 9 7 2 11 11 N 1.46905 * 109.46971 * 180.02562 * 10 9 7 12 12 C 1.48678 * 111.10554 * 285.41395 * 11 10 9 13 13 C 1.54373 * 104.67155 * 201.09641 * 12 11 10 14 14 C 1.54264 * 105.06392 * 23.77376 * 13 12 11 15 15 C 1.48554 * 111.00041 * 170.00138 * 11 10 9 16 16 H 1.08994 * 110.41557 * 40.13736 * 15 11 10 17 17 C 1.53004 * 110.40940 * 277.81218 * 15 11 10 18 18 C 1.54894 * 110.48128 * 64.89454 * 17 15 11 19 19 C 1.55238 * 102.58338 * 156.67574 * 18 17 15 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 H 0.96998 * 120.00102 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47355 * 59.99973 * 9 7 2 24 24 H 1.09001 * 109.47059 * 299.99536 * 9 7 2 25 25 H 1.08999 * 109.47304 * 59.99906 * 10 9 7 26 26 H 1.09001 * 109.46992 * 299.99540 * 10 9 7 27 27 H 1.09004 * 110.43989 * 82.26224 * 12 11 10 28 28 H 1.08996 * 110.40923 * 319.91890 * 12 11 10 29 29 H 1.09005 * 110.32668 * 264.87718 * 13 12 11 30 30 H 1.09002 * 110.32586 * 142.66684 * 13 12 11 31 31 H 1.09000 * 110.32745 * 241.10300 * 14 13 12 32 32 H 1.08999 * 110.40779 * 118.93793 * 14 13 12 33 33 H 1.09002 * 110.43542 * 302.35302 * 17 15 11 34 34 H 1.08996 * 110.75388 * 275.05927 * 18 17 15 35 35 H 1.08993 * 110.76071 * 38.44153 * 18 17 15 36 36 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 37 37 H 1.09006 * 110.46947 * 80.77225 * 19 18 17 38 38 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 39 39 H 1.09003 * 110.02805 * 142.89578 * 20 19 18 40 40 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 41 41 H 1.08995 * 110.03881 * 119.28625 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 0.9225 -5.2134 1.3377 13 6 0.6825 -6.7383 1.3486 14 6 1.6728 -7.3074 0.3117 15 6 2.4279 -6.0782 -0.2384 16 1 3.3641 -5.9345 0.3009 17 6 2.6957 -6.2428 -1.7358 18 6 3.4575 -5.0126 -2.2885 19 6 4.1505 -5.5846 -3.5543 20 6 4.5766 -7.0090 -3.1425 21 6 3.6516 -7.4274 -1.9863 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6038 0.8922 26 1 2.8727 -3.6046 -0.8878 27 1 -0.0202 -4.6794 1.4577 28 1 1.6205 -4.9328 2.1265 29 1 -0.3431 -6.9623 1.0551 30 1 0.8924 -7.1476 2.3368 31 1 1.1334 -7.8106 -0.4907 32 1 2.3690 -7.9967 0.7894 33 1 1.7601 -6.3866 -2.2762 34 1 2.7631 -4.2149 -2.5524 35 1 4.1966 -4.6606 -1.5690 36 1 5.0233 -4.9857 -3.8147 37 1 3.4498 -5.6222 -4.3885 38 1 5.6141 -7.0064 -2.8086 39 1 4.4561 -7.6924 -3.9831 40 1 4.2402 -7.6280 -1.0911 41 1 3.0823 -8.3139 -2.2656 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044352417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:33 Heat of formation + Delta-G solvation = -40.613192 kcal Electronic energy + Delta-G solvation = -17625.620211 eV Core-core repulsion = 15117.208317 eV Total energy + Delta-G solvation = -2508.411894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66223 -38.00161 -35.66450 -33.68298 -31.54660 -30.30447 -29.40968 -27.21884 -26.30862 -23.39862 -21.91205 -21.35778 -21.15078 -20.26173 -18.56194 -17.12731 -16.79509 -16.53647 -16.18273 -15.27962 -15.12388 -14.69332 -14.36497 -14.20171 -13.78678 -13.65871 -13.33210 -13.23238 -12.87974 -12.66258 -12.41945 -12.19651 -12.16739 -11.92822 -11.77113 -11.59417 -11.50972 -11.41797 -11.24837 -11.13473 -11.11949 -10.97300 -10.54881 -9.30376 -8.21654 -6.33547 1.37672 1.38520 1.51838 2.38545 3.11324 3.13951 3.63316 3.73533 3.89821 3.98904 4.00406 4.19926 4.33533 4.47184 4.53106 4.59752 4.64513 4.67967 4.71211 4.76394 4.89507 4.90995 4.95321 5.03739 5.07522 5.09026 5.12704 5.17507 5.24427 5.31828 5.35368 5.41589 5.43893 5.55522 5.58768 5.64187 5.79711 6.07717 6.22638 6.34729 6.83963 7.35761 8.90922 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.006649 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.758102 B = 4210.138405 C = 5184.180234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.055 3.945 11 N -0.520 5.520 12 C 0.029 3.971 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.065 3.935 16 H 0.041 0.959 17 C -0.071 4.071 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.110 4.110 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.016 1.016 25 H 0.011 0.989 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 -16.936 -2.551 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.005 3.995 10 C -0.072 4.072 11 N -0.244 5.244 12 C -0.099 4.099 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.043 4.043 16 H 0.059 0.941 17 C -0.090 4.090 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.003 0.997 25 H 0.029 0.971 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.065 -16.784 -2.965 18.450 hybrid contribution 0.492 1.519 0.806 1.789 sum 7.557 -15.265 -2.158 17.169 Atomic orbital electron populations 1.70131 1.07883 1.27711 1.51533 1.25987 0.95753 1.03374 0.94585 0.85377 0.79029 0.78598 0.77914 1.18556 1.20166 1.20221 1.21641 0.93393 0.92316 1.50788 0.92364 1.18813 0.94084 0.92150 0.94464 1.22481 0.95789 0.89175 0.99793 1.65310 1.29892 1.01787 1.27429 1.23099 0.98991 0.97729 0.90069 1.22283 1.00475 0.92435 1.00192 1.22320 0.97807 0.96046 0.98524 1.22795 0.94186 0.91133 0.96217 0.94128 1.21882 0.98503 0.95129 0.93504 1.22709 0.98461 0.97521 0.97595 1.22439 0.99949 0.96798 0.96970 1.22113 0.99407 0.95780 0.98343 1.22134 0.96895 0.97065 0.98708 0.92745 0.99276 0.99749 0.97072 0.89744 0.92616 0.95045 0.90867 0.89696 0.90296 0.89436 0.91272 0.93581 0.92634 0.91615 0.91693 0.91410 0.90623 0.91387 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.71 13.29 21.45 0.28 -58.43 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -32.27 9.11 25.60 0.23 -32.04 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.40 5.09 29.85 0.15 2.55 16 10 C 0.06 2.50 4.57 86.30 0.39 2.90 16 11 N -0.52 -19.99 5.01 -856.39 -4.29 -24.28 16 12 C 0.03 1.03 5.92 86.43 0.51 1.55 16 13 C -0.12 -2.93 7.00 31.49 0.22 -2.71 16 14 C -0.11 -2.50 6.10 31.49 0.19 -2.31 16 15 C 0.06 1.90 1.83 45.07 0.08 1.99 16 16 H 0.04 1.23 7.99 -2.39 -0.02 1.21 16 17 C -0.07 -1.91 2.48 -9.72 -0.02 -1.93 16 18 C -0.13 -3.76 4.40 32.01 0.14 -3.62 16 19 C -0.12 -2.89 6.84 31.79 0.22 -2.67 16 20 C -0.12 -2.22 6.80 31.32 0.21 -2.00 16 21 C -0.11 -2.15 5.92 31.32 0.19 -1.97 16 22 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 23 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 24 H -0.02 -0.97 7.48 -2.39 -0.02 -0.99 16 25 H 0.01 0.51 7.77 -2.39 -0.02 0.49 16 26 H 0.08 3.70 3.82 -2.39 -0.01 3.69 16 27 H 0.06 2.20 7.86 -2.38 -0.02 2.18 16 28 H 0.03 1.13 7.76 -2.39 -0.02 1.11 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.68 7.86 -2.39 -0.02 1.66 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 1.67 7.19 -2.39 -0.02 1.65 16 35 H 0.05 1.74 7.27 -2.39 -0.02 1.73 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.26 7.84 -2.39 -0.02 1.24 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -66.97 311.01 1.96 -65.01 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.96 Total: 10.02 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 2.98 Total: -39.77 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -4.01 Total: -82.71 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.97 1.96 -65.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044352417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.395 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds