Wall clock time and date at job start Sun Mar 29 2020 21:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99530 * 2 1 4 4 H 1.48507 * 109.47265 * 269.99873 * 3 2 1 5 5 H 1.48496 * 109.47721 * 30.00090 * 3 2 1 6 6 H 1.48502 * 109.46956 * 150.00135 * 3 2 1 7 7 C 1.37875 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00088 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47061 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47315 * 179.97438 * 10 9 7 12 12 C 1.47846 * 110.99791 * 287.49221 * 11 10 9 13 13 C 1.54916 * 104.79209 * 213.63212 * 12 11 10 14 14 C 1.55133 * 101.65157 * 37.07215 * 13 12 11 15 15 C 1.47445 * 111.00321 * 166.64514 * 11 10 9 16 16 H 1.08991 * 109.88536 * 242.82637 * 15 11 10 17 17 C 1.53000 * 109.88474 * 3.85313 * 15 11 10 18 18 C 1.54273 * 110.02719 * 183.52854 * 17 15 11 19 19 C 1.54960 * 104.15591 * 217.13612 * 18 17 15 20 20 C 1.54885 * 102.78140 * 37.88932 * 19 18 17 21 21 C 1.53873 * 110.03152 * 66.31277 * 17 15 11 22 22 H 0.97000 * 120.00315 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47300 * 59.99939 * 9 7 2 24 24 H 1.09005 * 109.46945 * 299.99946 * 9 7 2 25 25 H 1.08995 * 109.47355 * 299.99916 * 10 9 7 26 26 H 1.08997 * 109.47298 * 60.00407 * 10 9 7 27 27 H 1.08994 * 110.37459 * 332.46100 * 12 11 10 28 28 H 1.09000 * 110.37424 * 94.80981 * 12 11 10 29 29 H 1.09002 * 110.99146 * 278.97668 * 13 12 11 30 30 H 1.08996 * 111.01790 * 155.17504 * 13 12 11 31 31 H 1.09009 * 110.70604 * 205.96434 * 14 13 12 32 32 H 1.08996 * 110.86237 * 82.79923 * 14 13 12 33 33 H 1.08991 * 110.01577 * 304.91835 * 17 15 11 34 34 H 1.08999 * 110.48712 * 335.78619 * 18 17 15 35 35 H 1.09005 * 110.48069 * 98.42865 * 18 17 15 36 36 H 1.08999 * 110.72268 * 279.57381 * 19 18 17 37 37 H 1.09004 * 110.92299 * 156.30178 * 19 18 17 38 38 H 1.08996 * 110.48853 * 203.40533 * 20 19 18 39 39 H 1.09001 * 110.48332 * 80.75825 * 20 19 18 40 40 H 1.08997 * 110.03094 * 238.56043 * 21 17 15 41 41 H 1.08995 * 110.03610 * 359.95249 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4907 -2.6363 -0.0022 12 6 6.0194 -2.2220 -1.3192 13 6 7.3253 -3.0366 -1.4953 14 6 6.9369 -4.3939 -0.8523 15 6 6.0194 -3.9755 0.3158 16 1 6.5900 -3.9380 1.2437 17 6 4.8659 -4.9711 0.4541 18 6 5.4082 -6.3531 0.8735 19 6 4.5193 -7.3596 0.1001 20 6 4.3148 -6.6575 -1.2652 21 6 4.1707 -5.1644 -0.9049 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6802 0.8889 24 1 3.8745 -0.6798 -0.8912 25 1 3.6587 -3.1500 0.8892 26 1 3.6581 -3.1504 -0.8907 27 1 5.3089 -2.4687 -2.1081 28 1 6.2353 -1.1536 -1.3224 29 1 8.1511 -2.5715 -0.9570 30 1 7.5697 -3.1600 -2.5503 31 1 7.8215 -4.9117 -0.4811 32 1 6.3958 -5.0191 -1.5625 33 1 4.1492 -4.6115 1.1924 34 1 6.4517 -6.4595 0.5769 35 1 5.2999 -6.4951 1.9488 36 1 3.5655 -7.5015 0.6082 37 1 5.0321 -8.3128 -0.0287 38 1 3.4091 -7.0221 -1.7498 39 1 5.1815 -6.8129 -1.9077 40 1 3.1163 -4.8995 -0.8259 41 1 4.6545 -4.5483 -1.6628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044352419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:35 Heat of formation + Delta-G solvation = -5.978034 kcal Electronic energy + Delta-G solvation = -18017.579618 eV Core-core repulsion = 15510.669617 eV Total energy + Delta-G solvation = -2506.910001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27489 -36.56570 -33.65003 -31.92477 -30.46629 -28.81794 -28.64507 -26.21361 -24.34532 -21.73738 -21.36587 -20.46007 -19.56518 -18.36213 -16.73045 -16.30977 -15.39869 -15.03637 -14.43195 -14.32640 -14.01125 -13.43644 -13.15496 -12.79892 -12.47779 -12.32817 -11.71586 -11.47901 -11.42789 -11.05418 -11.02058 -10.97558 -10.89904 -10.73137 -10.64864 -10.44558 -10.31935 -10.17093 -9.75521 -9.60198 -9.51372 -9.12156 -8.48192 -7.66062 -6.00199 -3.97602 3.35219 3.42536 3.49964 4.42330 4.50799 4.67641 4.71712 4.84087 4.94274 5.04111 5.19516 5.35010 5.48034 5.54869 5.57582 5.61523 5.71625 5.72283 5.82029 5.88881 5.91758 5.95906 6.02422 6.06590 6.15825 6.18821 6.27149 6.29473 6.35255 6.41731 6.50685 6.56515 6.61756 6.93466 7.27218 7.38638 7.67099 7.73201 7.93527 8.58410 9.04297 9.63281 11.13227 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.007064 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.558740 B = 3963.082842 C = 4613.491722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.518 4.518 8 H 0.070 0.930 9 C -0.007 4.007 10 C 0.051 3.949 11 N -0.528 5.528 12 C 0.045 3.955 13 C -0.131 4.131 14 C -0.140 4.140 15 C 0.080 3.920 16 H 0.077 0.923 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.123 4.123 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.007 0.993 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.698 -12.014 -1.882 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.045 4.045 10 C -0.075 4.075 11 N -0.252 5.252 12 C -0.083 4.083 13 C -0.169 4.169 14 C -0.178 4.178 15 C -0.028 4.028 16 H 0.095 0.905 17 C -0.130 4.130 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.163 4.163 21 C -0.161 4.161 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.026 0.974 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.689 -11.522 -1.493 17.955 hybrid contribution -0.009 0.430 -0.619 0.754 sum 13.680 -11.092 -2.112 17.738 Atomic orbital electron populations 1.69918 1.06300 1.26815 1.51470 1.24990 0.94685 0.99142 0.94578 0.86776 0.80566 0.83554 0.78440 1.20452 1.21502 1.18747 1.21105 0.89567 0.94372 1.50623 0.91222 1.19552 0.96195 0.92251 0.96530 1.22734 0.84188 0.99989 1.00634 1.63776 1.10325 1.23008 1.28105 1.23031 0.94651 0.99967 0.90666 1.22709 0.98181 0.95809 1.00211 1.22973 0.99310 0.97403 0.98157 1.22454 0.94471 0.87932 0.97971 0.90509 1.22410 0.97668 0.94864 0.98021 1.22418 0.99215 0.94351 0.99573 1.22479 0.99814 0.97684 0.96150 1.22418 1.00973 0.95949 0.97000 1.22516 1.01284 0.95469 0.96790 0.92825 0.96060 0.97422 0.91099 0.93868 0.93668 0.90751 0.91161 0.91510 0.91705 0.90694 0.89586 0.91693 0.91961 0.91614 0.92152 0.92007 0.92205 0.91010 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.38 27.47 -169.99 -4.67 17.71 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.18 4.13 -27.89 -0.12 -0.30 16 10 C 0.05 1.04 3.28 -3.82 -0.01 1.03 16 11 N -0.53 -9.32 5.11 -223.35 -1.14 -10.46 16 12 C 0.04 0.71 5.46 -2.29 -0.01 0.70 16 13 C -0.13 -1.64 7.08 -24.59 -0.17 -1.82 16 14 C -0.14 -1.70 4.99 -24.91 -0.12 -1.82 16 15 C 0.08 1.15 3.15 -66.72 -0.21 0.94 16 16 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.11 -1.53 2.18 -89.50 -0.19 -1.72 16 18 C -0.12 -1.33 6.22 -25.03 -0.16 -1.48 16 19 C -0.12 -1.33 6.91 -24.70 -0.17 -1.50 16 20 C -0.13 -1.46 6.60 -25.07 -0.17 -1.62 16 21 C -0.12 -1.74 3.52 -25.61 -0.09 -1.83 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 24 H 0.01 0.19 7.04 -51.93 -0.37 -0.18 16 25 H 0.07 1.47 5.71 -51.93 -0.30 1.17 16 26 H 0.04 0.88 4.47 -51.93 -0.23 0.65 16 27 H 0.05 0.75 7.07 -51.93 -0.37 0.38 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.69 8.07 -51.92 -0.42 0.27 16 32 H 0.07 0.90 5.15 -51.93 -0.27 0.64 16 33 H 0.09 1.36 5.98 -51.93 -0.31 1.05 16 34 H 0.06 0.68 7.02 -51.93 -0.36 0.32 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.64 7.60 -51.93 -0.39 0.25 16 40 H 0.07 1.15 7.29 -51.93 -0.38 0.77 16 41 H 0.07 1.00 4.53 -51.93 -0.24 0.76 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -30.42 294.51 -9.43 -39.85 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.97 Total: -1.07 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -1.86 Total: -22.88 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.37 Total: -38.04 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.67 Total: 17.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.42 -9.43 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044352419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.870 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds