Wall clock time and date at job start Sun Mar 29 2020 21:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99530 * 2 1 4 4 H 1.48507 * 109.47265 * 269.99873 * 3 2 1 5 5 H 1.48496 * 109.47721 * 30.00090 * 3 2 1 6 6 H 1.48502 * 109.46956 * 150.00135 * 3 2 1 7 7 C 1.37875 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99935 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00088 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47061 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47315 * 179.97438 * 10 9 7 12 12 C 1.47846 * 110.99791 * 287.49221 * 11 10 9 13 13 C 1.54916 * 104.79209 * 213.63212 * 12 11 10 14 14 C 1.55133 * 101.65157 * 37.07215 * 13 12 11 15 15 C 1.47445 * 111.00321 * 166.64514 * 11 10 9 16 16 H 1.08991 * 109.88536 * 242.82637 * 15 11 10 17 17 C 1.53000 * 109.88474 * 3.85313 * 15 11 10 18 18 C 1.54273 * 110.02719 * 183.52854 * 17 15 11 19 19 C 1.54960 * 104.15591 * 217.13612 * 18 17 15 20 20 C 1.54885 * 102.78140 * 37.88932 * 19 18 17 21 21 C 1.53873 * 110.03152 * 66.31277 * 17 15 11 22 22 H 0.97000 * 120.00315 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47300 * 59.99939 * 9 7 2 24 24 H 1.09005 * 109.46945 * 299.99946 * 9 7 2 25 25 H 1.08995 * 109.47355 * 299.99916 * 10 9 7 26 26 H 1.08997 * 109.47298 * 60.00407 * 10 9 7 27 27 H 1.08994 * 110.37459 * 332.46100 * 12 11 10 28 28 H 1.09000 * 110.37424 * 94.80981 * 12 11 10 29 29 H 1.09002 * 110.99146 * 278.97668 * 13 12 11 30 30 H 1.08996 * 111.01790 * 155.17504 * 13 12 11 31 31 H 1.09009 * 110.70604 * 205.96434 * 14 13 12 32 32 H 1.08996 * 110.86237 * 82.79923 * 14 13 12 33 33 H 1.08991 * 110.01577 * 304.91835 * 17 15 11 34 34 H 1.08999 * 110.48712 * 335.78619 * 18 17 15 35 35 H 1.09005 * 110.48069 * 98.42865 * 18 17 15 36 36 H 1.08999 * 110.72268 * 279.57381 * 19 18 17 37 37 H 1.09004 * 110.92299 * 156.30178 * 19 18 17 38 38 H 1.08996 * 110.48853 * 203.40533 * 20 19 18 39 39 H 1.09001 * 110.48332 * 80.75825 * 20 19 18 40 40 H 1.08997 * 110.03094 * 238.56043 * 21 17 15 41 41 H 1.08995 * 110.03610 * 359.95249 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4907 -2.6363 -0.0022 12 6 6.0194 -2.2220 -1.3192 13 6 7.3253 -3.0366 -1.4953 14 6 6.9369 -4.3939 -0.8523 15 6 6.0194 -3.9755 0.3158 16 1 6.5900 -3.9380 1.2437 17 6 4.8659 -4.9711 0.4541 18 6 5.4082 -6.3531 0.8735 19 6 4.5193 -7.3596 0.1001 20 6 4.3148 -6.6575 -1.2652 21 6 4.1707 -5.1644 -0.9049 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6802 0.8889 24 1 3.8745 -0.6798 -0.8912 25 1 3.6587 -3.1500 0.8892 26 1 3.6581 -3.1504 -0.8907 27 1 5.3089 -2.4687 -2.1081 28 1 6.2353 -1.1536 -1.3224 29 1 8.1511 -2.5715 -0.9570 30 1 7.5697 -3.1600 -2.5503 31 1 7.8215 -4.9117 -0.4811 32 1 6.3958 -5.0191 -1.5625 33 1 4.1492 -4.6115 1.1924 34 1 6.4517 -6.4595 0.5769 35 1 5.2999 -6.4951 1.9488 36 1 3.5655 -7.5015 0.6082 37 1 5.0321 -8.3128 -0.0287 38 1 3.4091 -7.0221 -1.7498 39 1 5.1815 -6.8129 -1.9077 40 1 3.1163 -4.8995 -0.8259 41 1 4.6545 -4.5483 -1.6628 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044352419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:35 Heat of formation + Delta-G solvation = -24.768915 kcal Electronic energy + Delta-G solvation = -18018.394452 eV Core-core repulsion = 15510.669617 eV Total energy + Delta-G solvation = -2507.724835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46347 -37.67441 -35.57907 -33.76589 -31.62780 -30.51553 -29.66070 -27.30958 -26.17847 -23.16034 -22.64326 -21.45147 -21.02487 -19.63490 -18.85042 -17.42168 -16.70119 -16.28946 -16.09369 -15.77444 -15.39360 -14.84971 -14.53855 -14.25595 -13.89835 -13.87112 -13.21534 -13.09453 -12.74661 -12.46909 -12.14727 -12.11036 -12.01072 -11.91069 -11.85778 -11.66657 -11.57068 -11.56022 -11.41663 -11.33717 -11.20107 -10.93083 -10.74299 -9.06154 -8.32019 -6.35682 1.32293 1.34884 1.48607 2.34355 3.03381 3.14951 3.63761 3.67641 3.78833 3.87591 4.00360 4.17932 4.39672 4.41619 4.51642 4.55501 4.55998 4.64598 4.70364 4.76866 4.84101 4.89766 4.93384 5.01192 5.03677 5.08222 5.10114 5.16007 5.22062 5.23494 5.30612 5.34887 5.43114 5.48796 5.52250 5.54801 5.64125 6.17371 6.31082 6.33436 6.71863 7.29290 8.84707 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.007064 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.558740 B = 3963.082842 C = 4613.491722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.032 0.968 9 C 0.000 4.000 10 C 0.069 3.931 11 N -0.542 5.542 12 C 0.037 3.963 13 C -0.120 4.120 14 C -0.131 4.131 15 C 0.077 3.923 16 H 0.082 0.918 17 C -0.110 4.110 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.122 4.122 22 H 0.267 0.733 23 H 0.013 0.987 24 H 0.010 0.990 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.724 -12.638 -2.311 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.569 4.569 8 H 0.050 0.950 9 C -0.038 4.038 10 C -0.058 4.058 11 N -0.266 5.266 12 C -0.091 4.091 13 C -0.158 4.158 14 C -0.169 4.169 15 C -0.031 4.031 16 H 0.100 0.900 17 C -0.130 4.130 18 C -0.148 4.148 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.160 4.160 22 H 0.076 0.924 23 H 0.031 0.969 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.730 -12.164 -1.923 20.774 hybrid contribution -1.025 0.579 -0.473 1.269 sum 15.705 -11.585 -2.396 19.662 Atomic orbital electron populations 1.70059 1.08152 1.28162 1.52656 1.25948 0.95586 1.03341 0.94047 0.85658 0.79375 0.78417 0.79213 1.19070 1.20610 1.17665 1.21405 0.91893 0.93133 1.50441 0.95011 1.19430 0.93339 0.95074 0.95949 1.22364 0.86602 0.96841 1.00012 1.63662 1.07906 1.25638 1.29370 1.23108 0.96371 1.00226 0.89414 1.22681 0.96206 0.95107 1.01803 1.22941 0.99619 0.97412 0.96962 1.22559 0.94893 0.86293 0.99317 0.90047 1.22337 0.97029 0.96608 0.96976 1.22389 1.00123 0.92302 0.99975 1.22482 0.99661 0.98496 0.95180 1.22400 1.01786 0.93707 0.97925 1.22434 0.99057 0.97545 0.96946 0.92433 0.96865 0.97163 0.92187 0.94346 0.94860 0.91587 0.90204 0.89414 0.88978 0.90416 0.92635 0.89804 0.91520 0.92471 0.89723 0.92080 0.90386 0.94416 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.12 13.96 21.45 0.30 -60.83 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 46.46 27.47 68.60 1.88 48.34 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 7 C -0.53 -32.03 9.66 25.60 0.25 -31.78 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.00 0.00 4.13 29.85 0.12 0.12 16 10 C 0.07 2.93 3.28 86.30 0.28 3.21 16 11 N -0.54 -18.90 5.11 -860.55 -4.39 -23.29 16 12 C 0.04 1.13 5.46 86.78 0.47 1.60 16 13 C -0.12 -2.62 7.08 31.98 0.23 -2.40 16 14 C -0.13 -2.73 4.99 31.77 0.16 -2.57 16 15 C 0.08 2.10 3.15 45.26 0.14 2.24 16 16 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 17 C -0.11 -3.01 2.18 -10.07 -0.02 -3.03 16 18 C -0.11 -2.23 6.22 31.70 0.20 -2.03 16 19 C -0.12 -2.32 6.91 31.91 0.22 -2.10 16 20 C -0.12 -2.60 6.60 31.67 0.21 -2.39 16 21 C -0.12 -3.48 3.52 31.32 0.11 -3.37 16 22 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 23 H 0.01 0.68 7.20 -2.38 -0.02 0.66 16 24 H 0.01 0.50 7.04 -2.38 -0.02 0.49 16 25 H 0.06 2.64 5.71 -2.39 -0.01 2.63 16 26 H 0.04 1.65 4.47 -2.39 -0.01 1.64 16 27 H 0.03 1.10 7.07 -2.39 -0.02 1.08 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.49 8.07 -2.38 -0.02 1.47 16 32 H 0.08 1.60 5.15 -2.39 -0.01 1.59 16 33 H 0.06 1.84 5.98 -2.39 -0.01 1.83 16 34 H 0.08 1.42 7.02 -2.39 -0.02 1.40 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.43 7.60 -2.39 -0.02 1.41 16 40 H 0.04 1.30 7.29 -2.39 -0.02 1.28 16 41 H 0.06 1.78 4.53 -2.39 -0.01 1.77 16 Total: -1.00 -67.46 294.51 1.55 -65.91 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.93 Total: 11.44 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 2.83 Total: -41.58 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -4.09 Total: -84.11 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.88 Total: 48.34 kcal Total: -67.46 1.55 -65.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044352419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.141 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds