Wall clock time and date at job start Sun Mar 29 2020 21:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46898 * 109.46987 * 119.99781 * 2 1 3 11 11 C 1.46900 * 111.00381 * 275.00047 * 10 2 1 12 12 C 1.52997 * 109.47128 * 179.97438 * 11 10 2 13 13 C 1.53002 * 109.46832 * 180.02562 * 12 11 10 14 14 C 1.50709 * 109.47002 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99998 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99864 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99980 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99779 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47296 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47028 * 119.99956 * 18 16 14 21 21 H 1.48506 * 109.47124 * 240.00037 * 18 16 14 22 22 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 23 23 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 24 24 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 26 26 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 27 27 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 28 28 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 29 29 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 30 30 H 1.00904 * 111.00101 * 38.95899 * 10 2 1 31 31 H 1.08995 * 109.47035 * 300.00194 * 11 10 2 32 32 H 1.09004 * 109.46920 * 60.00172 * 11 10 2 33 33 H 1.08995 * 109.47454 * 300.00101 * 12 11 10 34 34 H 1.09003 * 109.47441 * 60.00530 * 12 11 10 35 35 H 1.09000 * 109.47381 * 299.99526 * 13 12 11 36 36 H 1.08995 * 109.47414 * 60.00188 * 13 12 11 37 37 H 0.97010 * 119.99919 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0196 -0.6924 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5949 -0.5332 3.5745 13 6 2.6597 0.4198 4.7697 14 6 3.1652 -0.3245 5.9788 15 1 3.4148 -1.3725 5.9024 16 6 3.3079 0.3322 7.1827 17 7 3.0035 1.6082 7.2758 18 14 3.9337 -0.5906 8.6814 19 1 4.2024 -2.0046 8.3157 20 1 5.1867 0.0428 9.1651 21 1 2.9089 -0.5437 9.7552 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6055 -0.2617 -2.1369 26 1 1.7517 -1.7714 -1.2056 27 1 4.1058 -2.6958 -1.4554 28 1 6.5342 -1.7002 -1.5146 29 1 6.3374 0.9550 -1.3524 30 1 1.4495 -1.4979 1.4100 31 1 2.7588 1.0462 2.1183 32 1 1.0870 0.6163 2.5526 33 1 1.9183 -1.3565 3.8030 34 1 3.5903 -0.9272 3.3692 35 1 3.3363 1.2434 4.5416 36 1 1.6643 0.8135 4.9749 37 1 3.1043 2.0703 8.1227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:11 Heat of formation + Delta-G solvation = 60.353983 kcal Electronic energy + Delta-G solvation = -16417.025738 eV Core-core repulsion = 13809.451765 eV Total energy + Delta-G solvation = -2607.573972 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91413 -37.52276 -34.34947 -32.77689 -31.45322 -29.89037 -29.29138 -26.39004 -25.76309 -22.59175 -21.61970 -20.87215 -20.43095 -19.76589 -17.22893 -16.32341 -15.55876 -15.12066 -14.88456 -14.40879 -14.28638 -13.67591 -13.61784 -13.11623 -12.73618 -12.66431 -12.29778 -12.17612 -11.98987 -11.54189 -11.34136 -11.14411 -10.84778 -10.56166 -10.46218 -10.42039 -9.68524 -9.34526 -9.20907 -9.01230 -8.44232 -8.32192 -8.14018 -5.96987 -3.98993 2.10398 2.68667 3.04861 3.33014 3.40180 3.44823 4.18851 4.48607 4.54851 4.86218 4.94596 5.06969 5.11148 5.28330 5.30972 5.38871 5.55702 5.66177 5.75836 5.87484 5.92264 5.96599 6.04174 6.16716 6.35023 6.73696 6.77567 6.83190 7.15451 7.18331 7.31010 7.61842 7.71651 7.86721 7.89865 8.03541 8.46853 9.08346 9.64910 11.14570 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.004669 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.430428 B = 5995.092180 C = 6580.082052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.091 0.909 4 C 0.146 3.854 5 N -0.351 5.351 6 C 0.062 3.938 7 C -0.281 4.281 8 C 0.040 3.960 9 N -0.293 5.293 10 N -0.682 5.682 11 C 0.064 3.936 12 C -0.105 4.105 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.177 0.823 30 H 0.335 0.665 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.016 0.984 36 H 0.013 0.987 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -5.833 -19.170 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.110 0.890 4 C 0.024 3.976 5 N -0.133 5.133 6 C -0.086 4.086 7 C -0.311 4.311 8 C -0.146 4.146 9 N -0.115 5.115 10 N -0.312 5.312 11 C -0.064 4.064 12 C -0.143 4.143 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.184 0.816 28 H 0.159 0.841 29 H 0.194 0.806 30 H 0.153 0.847 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.378 -4.673 -19.112 19.818 hybrid contribution -0.013 -1.041 1.164 1.561 sum -2.391 -5.713 -17.948 18.987 Atomic orbital electron populations 1.22455 0.96338 1.02327 1.02918 1.21864 0.92640 0.99370 0.90471 0.89047 1.21761 0.75130 1.02190 0.98542 1.48421 1.06115 1.03810 1.54910 1.22414 0.90300 0.94380 1.01459 1.21409 0.97373 0.94555 1.17779 1.23772 0.94540 0.95892 1.00399 1.77266 1.04302 1.06146 1.23825 1.60591 1.56431 1.10022 1.04150 1.22107 0.98977 0.95360 0.89987 1.21599 0.99955 0.98840 0.93885 1.19064 0.96974 0.94356 0.91155 1.21290 1.43386 0.96414 0.94494 0.92669 1.25030 0.95644 0.94880 0.98978 1.69981 1.49028 1.09019 1.25583 0.86542 0.78520 0.80064 0.82922 1.19736 1.20982 1.21060 0.91640 0.91977 0.92250 0.89991 0.88960 0.81596 0.84091 0.80576 0.84691 0.91561 0.95765 0.93802 0.92725 0.96610 0.96862 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.16 37.16 0.34 -1.39 16 2 C 0.07 0.81 2.70 -67.71 -0.18 0.63 16 3 H 0.09 1.32 7.71 -51.92 -0.40 0.92 16 4 C 0.15 1.49 6.14 -4.04 -0.02 1.46 16 5 N -0.35 -4.57 3.60 -61.37 -0.22 -4.79 16 6 C 0.06 0.72 11.45 -17.22 -0.20 0.53 16 7 C -0.28 -3.43 10.80 -40.01 -0.43 -3.86 16 8 C 0.04 0.53 12.03 -17.37 -0.21 0.32 16 9 N -0.29 -4.47 12.34 30.63 0.38 -4.09 16 10 N -0.68 -9.89 6.17 -106.73 -0.66 -10.55 16 11 C 0.06 1.15 5.48 -3.83 -0.02 1.13 16 12 C -0.10 -2.26 5.41 -26.73 -0.14 -2.40 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 18 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 23 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 24 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 27 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.34 4.40 8.47 -39.29 -0.33 4.07 16 31 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 32 H 0.02 0.43 7.44 -51.93 -0.39 0.04 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -33.26 313.39 -7.60 -40.85 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.11 Total: 0.67 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.42 Total: -17.03 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.23 Total: -46.30 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.26 -7.60 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.207 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds