Wall clock time and date at job start Sun Mar 29 2020 21:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00016 * 2 1 3 5 5 N 1.46500 * 109.47148 * 175.00020 * 4 2 1 6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2 7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6 10 10 N 1.46898 * 109.46987 * 119.99781 * 2 1 3 11 11 C 1.46900 * 111.00381 * 275.00047 * 10 2 1 12 12 C 1.52997 * 109.47128 * 179.97438 * 11 10 2 13 13 C 1.53002 * 109.46832 * 180.02562 * 12 11 10 14 14 C 1.50709 * 109.47002 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99998 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99864 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99980 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99779 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47296 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47028 * 119.99956 * 18 16 14 21 21 H 1.48506 * 109.47124 * 240.00037 * 18 16 14 22 22 H 1.09003 * 109.46828 * 300.00440 * 1 2 3 23 23 H 1.09008 * 109.46606 * 59.99796 * 1 2 3 24 24 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46833 * 55.00012 * 4 2 1 26 26 H 1.08993 * 109.46978 * 295.00488 * 4 2 1 27 27 H 1.07999 * 126.12479 * 0.04451 * 6 5 4 28 28 H 1.07999 * 126.03957 * 180.26092 * 7 6 5 29 29 H 1.08004 * 125.89587 * 180.02562 * 8 7 6 30 30 H 1.00904 * 111.00101 * 38.95899 * 10 2 1 31 31 H 1.08995 * 109.47035 * 300.00194 * 11 10 2 32 32 H 1.09004 * 109.46920 * 60.00172 * 11 10 2 33 33 H 1.08995 * 109.47454 * 300.00101 * 12 11 10 34 34 H 1.09003 * 109.47441 * 60.00530 * 12 11 10 35 35 H 1.09000 * 109.47381 * 299.99526 * 13 12 11 36 36 H 1.08995 * 109.47414 * 60.00188 * 13 12 11 37 37 H 0.97010 * 119.99919 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.6178 -1.3109 6 6 4.3656 -1.6486 -1.4083 7 6 5.6172 -1.1351 -1.4369 8 6 5.5130 0.2573 -1.3535 9 7 4.2445 0.5684 -1.2770 10 7 2.0196 -0.6924 1.1995 11 6 2.0824 0.2226 2.3469 12 6 2.5949 -0.5332 3.5745 13 6 2.6597 0.4198 4.7697 14 6 3.1652 -0.3245 5.9788 15 1 3.4148 -1.3725 5.9024 16 6 3.3079 0.3322 7.1827 17 7 3.0035 1.6082 7.2758 18 14 3.9337 -0.5906 8.6814 19 1 4.2024 -2.0046 8.3157 20 1 5.1867 0.0428 9.1651 21 1 2.9089 -0.5437 9.7552 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6055 -0.2617 -2.1369 26 1 1.7517 -1.7714 -1.2056 27 1 4.1058 -2.6958 -1.4554 28 1 6.5342 -1.7002 -1.5146 29 1 6.3374 0.9550 -1.3524 30 1 1.4495 -1.4979 1.4100 31 1 2.7588 1.0462 2.1183 32 1 1.0870 0.6163 2.5526 33 1 1.9183 -1.3565 3.8030 34 1 3.5903 -0.9272 3.3692 35 1 3.3363 1.2434 4.5416 36 1 1.6643 0.8135 4.9749 37 1 3.1043 2.0703 8.1227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:10 Heat of formation + Delta-G solvation = 37.980353 kcal Electronic energy + Delta-G solvation = -16417.995931 eV Core-core repulsion = 13809.451765 eV Total energy + Delta-G solvation = -2608.544166 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.83749 -38.67764 -36.09711 -34.43466 -32.87133 -31.01376 -30.53194 -27.72739 -27.12778 -24.41982 -22.65126 -22.06412 -21.74727 -20.96067 -18.55499 -18.09485 -16.74719 -16.49318 -16.41614 -15.86239 -15.48674 -14.84434 -14.62749 -14.35552 -14.24731 -13.78094 -13.56314 -13.47545 -13.20099 -12.97399 -12.73980 -12.71740 -12.50086 -12.23622 -12.06697 -11.60444 -11.42167 -11.38030 -11.11678 -10.58976 -10.19452 -9.47039 -9.23312 -8.22534 -6.34342 1.18099 1.38507 1.39469 1.53067 1.84684 2.10255 2.39375 3.10527 3.11532 3.64166 4.02606 4.12586 4.15368 4.22315 4.25302 4.38868 4.50117 4.54035 4.64205 4.73768 4.84222 4.89478 5.02286 5.03673 5.10570 5.18979 5.22307 5.27908 5.48084 5.69766 5.81763 5.88877 5.99045 6.23068 6.33939 6.52889 6.82486 6.94379 7.35329 8.89893 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.004669 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.430428 B = 5995.092180 C = 6580.082052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 H 0.059 0.941 4 C 0.143 3.857 5 N -0.359 5.359 6 C 0.061 3.939 7 C -0.297 4.297 8 C 0.024 3.976 9 N -0.340 5.340 10 N -0.682 5.682 11 C 0.082 3.918 12 C -0.087 4.087 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.275 1.275 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.202 0.798 28 H 0.160 0.840 29 H 0.191 0.809 30 H 0.348 0.652 31 H 0.041 0.959 32 H 0.025 0.975 33 H 0.056 0.944 34 H 0.045 0.955 35 H -0.016 1.016 36 H -0.008 1.008 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 -8.195 -19.694 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.040 4.040 3 H 0.078 0.922 4 C 0.022 3.978 5 N -0.140 5.140 6 C -0.086 4.086 7 C -0.326 4.326 8 C -0.161 4.161 9 N -0.163 5.163 10 N -0.313 5.313 11 C -0.047 4.047 12 C -0.125 4.125 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.201 1.201 22 H 0.065 0.935 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.142 0.858 27 H 0.219 0.781 28 H 0.177 0.823 29 H 0.208 0.792 30 H 0.167 0.833 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.002 0.998 36 H 0.010 0.990 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.800 -7.042 -19.660 21.070 hybrid contribution 0.107 -0.280 1.282 1.317 sum -2.692 -7.323 -18.378 19.966 Atomic orbital electron populations 1.22366 0.94118 1.03761 1.02950 1.21844 0.94330 0.97750 0.90097 0.92219 1.21994 0.73903 1.04010 0.97894 1.48672 1.07095 1.03493 1.54745 1.23047 0.89982 0.95652 0.99953 1.21768 0.98660 0.94177 1.18002 1.24206 0.94627 0.97208 1.00092 1.77198 1.05339 1.08062 1.25650 1.60465 1.57610 1.09811 1.03443 1.21696 0.98110 0.94818 0.90121 1.21322 0.99921 0.98040 0.93248 1.18966 0.94698 0.94394 0.93166 1.21707 1.43843 0.96888 0.95639 0.92173 1.26032 0.95570 0.95786 1.02584 1.70116 1.49859 1.10819 1.26757 0.85349 0.78010 0.78988 0.78399 1.18476 1.20345 1.20094 0.93461 0.90127 0.90057 0.88149 0.85807 0.78110 0.82264 0.79198 0.83322 0.94021 0.95654 0.92560 0.93658 0.99775 0.98987 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.16 71.98 0.66 -2.27 16 2 C 0.07 1.60 2.70 44.92 0.12 1.72 16 3 H 0.06 1.76 7.71 -2.38 -0.02 1.74 16 4 C 0.14 2.55 6.14 86.38 0.53 3.08 16 5 N -0.36 -8.79 3.60 -348.07 -1.25 -10.05 16 6 C 0.06 1.29 11.45 83.54 0.96 2.25 16 7 C -0.30 -6.86 10.80 21.99 0.24 -6.62 16 8 C 0.02 0.63 12.03 85.24 1.03 1.66 16 9 N -0.34 -10.40 12.34 -57.02 -0.70 -11.11 16 10 N -0.68 -18.98 6.17 -491.57 -3.04 -22.02 16 11 C 0.08 3.00 5.48 86.30 0.47 3.47 16 12 C -0.09 -3.79 5.41 30.59 0.17 -3.63 16 13 C 0.03 1.41 4.97 29.85 0.15 1.56 16 14 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 17 N -0.94 -58.59 13.29 21.45 0.28 -58.30 16 18 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 23 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.12 1.43 8.07 -2.39 -0.02 1.41 16 27 H 0.20 2.62 8.06 -2.91 -0.02 2.59 16 28 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.19 4.12 8.06 -2.91 -0.02 4.09 16 30 H 0.35 8.28 8.47 -89.69 -0.76 7.52 16 31 H 0.04 1.72 8.05 -2.39 -0.02 1.70 16 32 H 0.03 0.92 7.44 -2.39 -0.02 0.90 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 35 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -73.51 313.39 2.60 -70.91 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.27 Total: 13.61 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 5.01 Total: -30.31 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.71 Total: -101.48 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -73.51 2.60 -70.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.895 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds