Wall clock time and date at job start Sun Mar 29 2020 21:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46754 * 2 1 4 4 C 1.46900 * 111.00257 * 288.02657 * 3 2 1 5 5 C 1.50697 * 109.47363 * 160.36111 * 4 3 2 6 6 H 1.07995 * 120.00026 * 4.66038 * 5 4 3 7 7 C 1.37877 * 120.00155 * 184.66005 * 5 4 3 8 8 N 1.31519 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00355 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47070 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47041 * 119.99659 * 9 7 5 12 12 H 1.48494 * 109.47277 * 240.00009 * 9 7 5 13 13 C 1.46903 * 110.99952 * 164.07087 * 3 2 1 14 14 C 1.50695 * 109.47361 * 293.95501 * 13 3 2 15 15 C 1.39874 * 126.04190 * 90.02123 * 14 13 3 16 16 N 1.30834 * 108.20132 * 179.97438 * 15 14 13 17 17 N 1.40085 * 108.20877 * 359.97438 * 16 15 14 18 18 C 1.46501 * 126.03697 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47083 * 304.97300 * 18 17 16 20 20 C 1.34942 * 107.92328 * 0.02562 * 17 16 15 21 21 H 1.09002 * 109.46908 * 59.45602 * 1 2 3 22 22 H 1.09004 * 109.46910 * 179.45368 * 1 2 3 23 23 H 1.09001 * 109.47403 * 299.45407 * 1 2 3 24 24 H 1.08995 * 109.47375 * 239.99789 * 2 1 3 25 25 H 1.09005 * 109.46966 * 119.99600 * 2 1 3 26 26 H 1.09003 * 109.46836 * 280.36510 * 4 3 2 27 27 H 1.09003 * 109.46740 * 40.35847 * 4 3 2 28 28 H 0.96993 * 119.99926 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47064 * 173.94846 * 13 3 2 30 30 H 1.09001 * 109.46548 * 53.95548 * 13 3 2 31 31 H 1.08002 * 125.89687 * 0.21888 * 15 14 13 32 32 H 1.08992 * 109.47194 * 64.97159 * 18 17 16 33 33 H 1.08994 * 109.46621 * 184.97621 * 18 17 16 34 34 H 1.09004 * 109.46984 * 60.00099 * 19 18 17 35 35 H 1.08998 * 109.47600 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47341 * 300.00672 * 19 18 17 37 37 H 1.08000 * 126.12734 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7950 2.0229 -1.3041 5 6 1.8463 3.5207 -1.1463 6 1 2.1019 3.9545 -0.1909 7 6 1.5669 4.3372 -2.2215 8 7 1.2562 3.8088 -3.3851 9 14 1.6312 6.1938 -2.0261 10 1 2.0043 6.5319 -0.6291 11 1 2.6427 6.7548 -2.9575 12 1 0.2986 6.7707 -2.3366 13 6 3.4385 1.4418 0.3764 14 6 3.5957 1.0060 1.8104 15 6 3.8150 -0.3024 2.2535 16 7 3.8982 -0.2831 3.5591 17 7 3.7347 1.0402 3.9886 18 6 3.7595 1.5047 5.3778 19 6 2.7302 0.7220 6.1957 20 6 3.5506 1.8115 2.8968 21 1 -0.3633 0.5223 -0.8851 22 1 -0.3633 -1.0277 -0.0098 23 1 -0.3634 0.5053 0.8948 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 2.5689 1.7043 -2.0025 27 1 0.8172 1.7312 -1.6875 28 1 1.0593 4.3832 -4.1415 29 1 3.8034 2.4629 0.2648 30 1 4.0127 0.7782 -0.2701 31 1 3.9045 -1.1769 1.6261 32 1 4.7531 1.3456 5.7965 33 1 3.5173 2.5669 5.4100 34 1 2.9724 -0.3404 6.1634 35 1 2.7482 1.0678 7.2292 36 1 1.7365 0.8809 5.7770 37 1 3.3948 2.8802 2.8910 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050539867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:19 Heat of formation + Delta-G solvation = 55.663513 kcal Electronic energy + Delta-G solvation = -16884.166315 eV Core-core repulsion = 14276.388949 eV Total energy + Delta-G solvation = -2607.777366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.09356 -38.48490 -35.33039 -34.63863 -32.39380 -31.11117 -30.76506 -28.41906 -25.88835 -24.58413 -24.30823 -21.93066 -21.25610 -20.72529 -18.50335 -17.80221 -16.78371 -16.35093 -16.13343 -15.62893 -15.30410 -15.05115 -14.70238 -14.40843 -14.07883 -13.80540 -13.28703 -13.19426 -13.03205 -12.92022 -12.81540 -12.60406 -12.42177 -12.21178 -12.18541 -12.02620 -11.56807 -11.32390 -11.12995 -10.54394 -10.24527 -9.28745 -8.85132 -8.13036 -6.22241 1.02370 1.44294 1.44786 1.57973 1.71687 1.87589 2.45494 3.18739 3.56854 3.63301 4.06530 4.13949 4.19887 4.28919 4.39577 4.41393 4.51676 4.61260 4.73317 4.78555 4.84316 4.91490 4.96759 5.06133 5.13210 5.25135 5.26201 5.35620 5.38692 5.44962 5.73816 5.77700 6.17010 6.22641 6.52252 6.73971 6.81587 6.94314 7.46944 8.97754 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025220 B = 0.006202 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.951540 B = 4513.646663 C = 5127.125225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 N -0.537 5.537 4 C 0.205 3.795 5 C -0.512 4.512 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.144 3.856 14 C -0.236 4.236 15 C 0.046 3.954 16 N -0.321 5.321 17 N -0.374 5.374 18 C 0.122 3.878 19 C -0.158 4.158 20 C 0.071 3.929 21 H 0.033 0.967 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.015 0.985 25 H 0.082 0.918 26 H -0.042 1.042 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.190 0.810 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -4.662 16.310 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 N -0.262 5.262 4 C 0.078 3.922 5 C -0.551 4.551 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.579 5.579 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.016 3.984 14 C -0.248 4.248 15 C -0.140 4.140 16 N -0.143 5.143 17 N -0.158 5.158 18 C 0.002 3.998 19 C -0.216 4.216 20 C -0.076 4.076 21 H 0.052 0.948 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.100 0.900 26 H -0.024 1.024 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.207 0.793 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.126 -5.002 17.729 18.878 hybrid contribution 0.175 0.856 -2.005 2.187 sum 4.301 -4.146 15.724 16.821 Atomic orbital electron populations 1.21684 0.95233 1.01313 1.01098 1.22081 0.96227 0.89731 0.99721 1.62131 1.17270 1.15903 1.30847 1.19447 0.93982 0.94034 0.84695 1.21505 1.45443 0.91803 0.96316 0.91836 1.25897 0.95122 1.03969 0.94823 1.70101 1.48921 1.36940 1.01935 0.85365 0.77559 0.79308 0.78561 1.18441 1.20669 1.20753 1.20066 0.88278 0.99897 0.90191 1.20006 1.15618 0.93554 0.95575 1.23943 0.99851 0.98079 0.92108 1.77148 1.25524 0.98655 1.12996 1.48918 1.55139 1.04504 1.07210 1.22024 1.01974 1.00348 0.75431 1.22002 0.97966 1.00659 1.00939 1.22592 0.99911 0.98919 0.86193 0.94823 0.90697 0.92954 0.96646 0.90008 1.02393 0.97113 0.92904 0.91535 0.95802 0.79303 0.88757 0.86318 0.92875 0.88068 0.93406 0.79516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 9.99 71.98 0.72 -4.13 16 2 C 0.05 1.90 5.55 86.31 0.48 2.38 16 3 N -0.54 -23.59 4.37 -905.34 -3.96 -27.55 16 4 C 0.20 11.00 4.59 85.56 0.39 11.39 16 5 C -0.51 -28.95 8.61 25.60 0.22 -28.73 16 6 H 0.06 3.50 7.66 -2.91 -0.02 3.47 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 8 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 9 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.14 5.64 5.27 85.55 0.45 6.09 16 14 C -0.24 -7.77 5.00 -20.14 -0.10 -7.87 16 15 C 0.05 1.38 10.31 85.24 0.88 2.26 16 16 N -0.32 -9.68 12.42 -57.02 -0.71 -10.39 16 17 N -0.37 -9.82 3.68 -348.08 -1.28 -11.10 16 18 C 0.12 2.04 7.23 86.38 0.62 2.66 16 19 C -0.16 -2.51 10.10 71.98 0.73 -1.78 16 20 C 0.07 2.07 11.36 83.54 0.95 3.01 16 21 H 0.03 1.36 6.52 -2.39 -0.02 1.34 16 22 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.02 0.59 8.05 -2.39 -0.02 0.57 16 25 H 0.08 2.75 5.53 -2.38 -0.01 2.74 16 26 H -0.04 -2.42 8.00 -2.39 -0.02 -2.44 16 27 H 0.01 0.63 6.24 -2.39 -0.01 0.61 16 28 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.07 2.79 7.32 -2.39 -0.02 2.78 16 30 H 0.02 0.92 8.12 -2.39 -0.02 0.91 16 31 H 0.19 4.88 7.98 -2.91 -0.02 4.85 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.12 1.40 8.07 -2.39 -0.02 1.38 16 34 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -67.98 306.79 3.19 -64.79 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.03 Total: 8.90 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 5.80 Total: -14.29 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -5.66 Total: -105.56 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.98 3.19 -64.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050539867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.449 kcal (2) G-P(sol) polarization free energy of solvation -67.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds