Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46920 * 2 1 4 4 H 1.08995 * 109.47198 * 174.09606 * 3 2 1 5 5 C 1.50700 * 109.47450 * 54.08809 * 3 2 1 6 6 H 1.07997 * 120.00165 * 240.00638 * 5 3 2 7 7 C 1.37881 * 119.99661 * 59.99995 * 5 3 2 8 8 N 1.31513 * 119.99981 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47011 * 60.00113 * 9 7 5 11 11 H 1.48502 * 109.46902 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46960 * 299.99702 * 9 7 5 13 13 N 1.46901 * 109.46858 * 294.08905 * 3 2 1 14 14 C 1.46896 * 111.00384 * 275.80189 * 13 3 2 15 15 C 1.52994 * 109.47508 * 176.17813 * 14 13 3 16 16 C 1.50706 * 109.47421 * 179.97438 * 15 14 13 17 17 C 1.29446 * 117.95750 * 94.73377 * 16 15 14 18 18 C 1.50066 * 124.07428 * 180.23807 * 17 16 15 19 19 C 1.53029 * 110.19911 * 343.31925 * 18 17 16 20 20 C 1.53394 * 108.43709 * 49.24727 * 19 18 17 21 21 C 1.50060 * 117.96299 * 274.99928 * 16 15 14 22 22 H 1.09002 * 109.46901 * 178.55477 * 1 2 3 23 23 H 1.08990 * 109.47342 * 58.55670 * 1 2 3 24 24 H 1.08996 * 109.47252 * 298.55278 * 1 2 3 25 25 H 1.08999 * 109.47305 * 119.99632 * 2 1 3 26 26 H 1.08995 * 109.47048 * 240.00183 * 2 1 3 27 27 H 0.97000 * 120.00479 * 179.97438 * 8 7 5 28 28 H 1.00902 * 110.99940 * 39.75747 * 13 3 2 29 29 H 1.09006 * 109.46730 * 296.17622 * 14 13 3 30 30 H 1.08996 * 109.47238 * 56.17085 * 14 13 3 31 31 H 1.08999 * 109.47196 * 300.00012 * 15 14 13 32 32 H 1.09006 * 109.47398 * 59.99602 * 15 14 13 33 33 H 1.08000 * 117.96499 * 0.47114 * 17 16 15 34 34 H 1.08997 * 109.48369 * 223.00282 * 18 17 16 35 35 H 1.08996 * 109.17886 * 103.44319 * 18 17 16 36 36 H 1.08998 * 109.64003 * 289.55948 * 19 18 17 37 37 H 1.09002 * 109.81403 * 169.03539 * 19 18 17 38 38 H 1.08998 * 109.63605 * 172.87734 * 20 19 18 39 39 H 1.09002 * 109.64149 * 52.24599 * 20 19 18 40 40 H 1.09000 * 109.36382 * 283.05331 * 21 16 15 41 41 H 1.09005 * 109.35607 * 42.77800 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1057 5 6 1.4217 2.1940 1.1507 6 1 0.8148 3.0670 0.9617 7 6 1.6309 1.7667 2.4449 8 7 2.3703 0.7038 2.6750 9 14 0.8640 2.6977 3.8712 10 1 -0.6139 2.6946 3.7269 11 1 1.2384 2.0409 5.1494 12 1 1.3585 4.0980 3.8714 13 7 1.6702 2.0925 -1.2644 14 6 2.6506 1.7935 -2.3166 15 6 2.1835 2.4065 -3.6382 16 6 3.1896 2.1002 -4.7176 17 6 2.9829 1.0624 -5.4631 18 6 3.8961 0.6283 -6.5720 19 6 4.8374 1.7711 -6.9592 20 6 5.4688 2.3342 -5.6796 21 6 4.3719 3.0137 -4.8572 22 1 -0.3633 -1.0274 -0.0259 23 1 -0.3633 0.5360 -0.8767 24 1 -0.3633 0.4912 0.9026 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.5179 0.4034 3.5854 28 1 0.7402 1.8250 -1.5501 29 1 3.6178 2.2149 -2.0424 30 1 2.7439 0.7134 -2.4299 31 1 1.2163 1.9852 -3.9124 32 1 2.0902 3.4867 -3.5249 33 1 2.0961 0.4744 -5.2780 34 1 3.3029 0.3392 -7.4394 35 1 4.4841 -0.2265 -6.2377 36 1 4.2735 2.5547 -7.4651 37 1 5.6196 1.3976 -7.6201 38 1 6.2363 3.0630 -5.9400 39 1 5.9108 1.5227 -5.1014 40 1 4.0623 3.9318 -5.3566 41 1 4.7614 3.2542 -3.8679 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051756330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = -18.489338 kcal Electronic energy + Delta-G solvation = -17038.714236 eV Core-core repulsion = 14531.261704 eV Total energy + Delta-G solvation = -2507.452532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.77551 -36.56341 -33.79136 -31.87735 -30.74374 -30.31829 -27.55022 -25.62115 -23.38056 -23.15178 -22.31994 -20.86896 -19.25292 -17.46408 -16.09470 -15.66089 -14.85516 -14.69599 -14.35774 -14.03575 -13.78439 -13.45422 -12.89160 -12.70712 -12.60592 -12.30021 -12.18929 -11.98417 -11.62052 -11.34035 -10.87559 -10.85264 -10.78382 -10.68054 -10.49585 -10.38720 -10.14523 -9.88118 -9.70645 -9.50101 -8.95533 -8.55508 -8.30380 -7.14416 -5.93434 -3.94939 2.38710 3.36651 3.40795 3.44184 4.47389 4.69937 4.72679 4.86535 5.19731 5.26195 5.38024 5.41574 5.49894 5.56054 5.60943 5.71475 5.81747 5.88816 5.91920 5.95871 6.04718 6.11858 6.21508 6.28354 6.37845 6.40083 6.51580 6.58149 6.64977 6.80857 6.94306 7.20221 7.32877 7.35123 7.54637 7.74380 7.93433 8.33776 8.61166 8.69069 9.10566 9.68540 11.13699 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041994 B = 0.004626 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.601349 B = 6051.312458 C = 6285.093384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.068 3.932 15 C -0.088 4.088 16 C -0.106 4.106 17 C -0.171 4.171 18 C -0.086 4.086 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.084 4.084 22 H 0.021 0.979 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.010 0.990 27 H 0.259 0.741 28 H 0.324 0.676 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 0.598 -15.989 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.062 4.062 15 C -0.125 4.125 16 C -0.107 4.107 17 C -0.189 4.189 18 C -0.123 4.123 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.121 4.121 22 H 0.040 0.960 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.305 1.098 -15.647 16.030 hybrid contribution -0.659 -0.629 0.702 1.151 sum 2.647 0.469 -14.945 15.185 Atomic orbital electron populations 1.21559 0.97704 0.97915 1.01246 1.22096 0.95006 1.01246 1.00117 1.19180 0.95982 0.88594 0.85495 0.95070 1.21043 1.30429 1.11473 0.89800 0.92130 1.24916 0.95604 0.95183 0.98681 1.69878 1.39278 1.24184 1.20347 0.86634 0.79607 0.80035 0.81542 1.20402 1.21531 1.20356 1.60876 1.03960 1.63226 1.03652 1.21821 0.97187 0.96750 0.90445 1.20799 0.96450 1.01951 0.93344 1.20892 0.96828 0.96422 0.96534 1.21845 1.00607 0.98236 0.98250 1.20377 0.96830 0.98109 0.96966 1.21594 0.98531 0.98214 0.97367 1.21609 0.97518 1.00206 0.96453 1.20409 0.93485 0.97497 1.00741 0.95974 0.95200 0.91533 0.89033 0.97138 0.93116 0.85765 0.91987 0.96466 0.92144 0.90837 0.88185 0.91599 0.91342 0.91966 0.92105 0.91909 0.91729 0.91087 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.39 37.16 0.35 -2.42 16 2 C -0.15 -3.48 5.50 -26.73 -0.15 -3.62 16 3 C 0.22 5.44 2.33 -68.86 -0.16 5.28 16 4 H 0.03 0.88 7.86 -51.93 -0.41 0.47 16 5 C -0.49 -13.41 7.35 -34.44 -0.25 -13.67 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.56 5.22 -17.82 -0.09 1.47 16 8 N -0.90 -25.62 11.39 55.43 0.63 -24.99 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.69 -14.84 6.25 -107.96 -0.68 -15.52 16 14 C 0.07 1.26 5.46 -3.83 -0.02 1.24 16 15 C -0.09 -1.33 5.44 -27.88 -0.15 -1.48 16 16 C -0.11 -1.42 5.09 -100.94 -0.51 -1.93 16 17 C -0.17 -2.16 9.37 -35.90 -0.34 -2.50 16 18 C -0.09 -0.89 6.11 -28.17 -0.17 -1.06 16 19 C -0.12 -1.14 6.01 -26.51 -0.16 -1.30 16 20 C -0.12 -1.24 6.01 -26.52 -0.16 -1.40 16 21 C -0.08 -1.00 5.80 -28.18 -0.16 -1.16 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.03 0.59 6.42 -51.93 -0.33 0.25 16 24 H 0.07 1.59 7.05 -51.93 -0.37 1.22 16 25 H 0.09 2.45 6.25 -51.93 -0.32 2.13 16 26 H 0.01 0.23 7.24 -51.93 -0.38 -0.15 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 28 H 0.32 6.70 6.56 -39.29 -0.26 6.44 16 29 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.02 0.33 7.23 -51.93 -0.38 -0.04 16 31 H 0.06 0.89 7.80 -51.93 -0.41 0.48 16 32 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.10 1.28 7.74 -52.49 -0.41 0.87 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -27.89 317.29 -9.71 -37.60 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.44 Total: 4.17 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -1.98 Total: -22.56 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.04 Total: -40.50 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.89 -9.71 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051756330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.109 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds