Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46920 * 2 1 4 4 H 1.08995 * 109.47198 * 174.09606 * 3 2 1 5 5 C 1.50700 * 109.47450 * 54.08809 * 3 2 1 6 6 H 1.07997 * 120.00165 * 240.00638 * 5 3 2 7 7 C 1.37881 * 119.99661 * 59.99995 * 5 3 2 8 8 N 1.31513 * 119.99981 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47011 * 60.00113 * 9 7 5 11 11 H 1.48502 * 109.46902 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46960 * 299.99702 * 9 7 5 13 13 N 1.46901 * 109.46858 * 294.08905 * 3 2 1 14 14 C 1.46896 * 111.00384 * 275.80189 * 13 3 2 15 15 C 1.52994 * 109.47508 * 176.17813 * 14 13 3 16 16 C 1.50706 * 109.47421 * 179.97438 * 15 14 13 17 17 C 1.29446 * 117.95750 * 94.73377 * 16 15 14 18 18 C 1.50066 * 124.07428 * 180.23807 * 17 16 15 19 19 C 1.53029 * 110.19911 * 343.31925 * 18 17 16 20 20 C 1.53394 * 108.43709 * 49.24727 * 19 18 17 21 21 C 1.50060 * 117.96299 * 274.99928 * 16 15 14 22 22 H 1.09002 * 109.46901 * 178.55477 * 1 2 3 23 23 H 1.08990 * 109.47342 * 58.55670 * 1 2 3 24 24 H 1.08996 * 109.47252 * 298.55278 * 1 2 3 25 25 H 1.08999 * 109.47305 * 119.99632 * 2 1 3 26 26 H 1.08995 * 109.47048 * 240.00183 * 2 1 3 27 27 H 0.97000 * 120.00479 * 179.97438 * 8 7 5 28 28 H 1.00902 * 110.99940 * 39.75747 * 13 3 2 29 29 H 1.09006 * 109.46730 * 296.17622 * 14 13 3 30 30 H 1.08996 * 109.47238 * 56.17085 * 14 13 3 31 31 H 1.08999 * 109.47196 * 300.00012 * 15 14 13 32 32 H 1.09006 * 109.47398 * 59.99602 * 15 14 13 33 33 H 1.08000 * 117.96499 * 0.47114 * 17 16 15 34 34 H 1.08997 * 109.48369 * 223.00282 * 18 17 16 35 35 H 1.08996 * 109.17886 * 103.44319 * 18 17 16 36 36 H 1.08998 * 109.64003 * 289.55948 * 19 18 17 37 37 H 1.09002 * 109.81403 * 169.03539 * 19 18 17 38 38 H 1.08998 * 109.63605 * 172.87734 * 20 19 18 39 39 H 1.09002 * 109.64149 * 52.24599 * 20 19 18 40 40 H 1.09000 * 109.36382 * 283.05331 * 21 16 15 41 41 H 1.09005 * 109.35607 * 42.77800 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1057 5 6 1.4217 2.1940 1.1507 6 1 0.8148 3.0670 0.9617 7 6 1.6309 1.7667 2.4449 8 7 2.3703 0.7038 2.6750 9 14 0.8640 2.6977 3.8712 10 1 -0.6139 2.6946 3.7269 11 1 1.2384 2.0409 5.1494 12 1 1.3585 4.0980 3.8714 13 7 1.6702 2.0925 -1.2644 14 6 2.6506 1.7935 -2.3166 15 6 2.1835 2.4065 -3.6382 16 6 3.1896 2.1002 -4.7176 17 6 2.9829 1.0624 -5.4631 18 6 3.8961 0.6283 -6.5720 19 6 4.8374 1.7711 -6.9592 20 6 5.4688 2.3342 -5.6796 21 6 4.3719 3.0137 -4.8572 22 1 -0.3633 -1.0274 -0.0259 23 1 -0.3633 0.5360 -0.8767 24 1 -0.3633 0.4912 0.9026 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 2.5179 0.4034 3.5854 28 1 0.7402 1.8250 -1.5501 29 1 3.6178 2.2149 -2.0424 30 1 2.7439 0.7134 -2.4299 31 1 1.2163 1.9852 -3.9124 32 1 2.0902 3.4867 -3.5249 33 1 2.0961 0.4744 -5.2780 34 1 3.3029 0.3392 -7.4394 35 1 4.4841 -0.2265 -6.2377 36 1 4.2735 2.5547 -7.4651 37 1 5.6196 1.3976 -7.6201 38 1 6.2363 3.0630 -5.9400 39 1 5.9108 1.5227 -5.1014 40 1 4.0623 3.9318 -5.3566 41 1 4.7614 3.2542 -3.8679 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051756330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = -33.037498 kcal Electronic energy + Delta-G solvation = -17039.345091 eV Core-core repulsion = 14531.261704 eV Total energy + Delta-G solvation = -2508.083388 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77955 -38.31709 -35.29237 -33.63718 -31.98713 -31.57878 -29.12560 -27.39421 -25.16441 -24.26522 -23.53340 -21.96277 -21.20408 -18.41779 -18.11897 -16.91733 -16.65026 -16.29532 -15.52139 -15.33263 -15.09936 -14.63944 -14.43029 -14.34665 -13.96095 -13.74000 -13.31191 -13.27470 -13.02645 -12.78563 -12.67158 -12.46580 -12.42429 -12.18161 -11.83568 -11.66284 -11.62005 -11.44091 -11.21511 -11.05115 -10.91273 -10.43492 -9.59839 -8.94468 -8.05300 -6.14353 1.36004 1.44325 1.45481 1.53026 2.46150 3.23281 3.59327 3.80545 3.98984 4.07980 4.20246 4.40231 4.44778 4.48849 4.51876 4.56526 4.59971 4.69947 4.72848 4.74721 4.80503 4.95675 5.04347 5.07894 5.08742 5.17038 5.18982 5.23940 5.36906 5.37585 5.41941 5.48675 5.67073 5.72888 5.81119 5.83723 6.19063 6.31233 6.67902 6.85817 6.98754 7.53559 9.00229 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041994 B = 0.004626 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.601349 B = 6051.312458 C = 6285.093384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.220 3.780 4 H -0.008 1.008 5 C -0.503 4.503 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.689 5.689 14 C 0.074 3.926 15 C -0.076 4.076 16 C -0.123 4.123 17 C -0.166 4.166 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.085 4.085 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.022 0.978 27 H 0.259 0.741 28 H 0.332 0.668 29 H 0.048 0.952 30 H 0.010 0.990 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 0.786 -17.462 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.010 0.990 5 C -0.541 4.541 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.320 5.320 14 C -0.056 4.056 15 C -0.114 4.114 16 C -0.124 4.124 17 C -0.184 4.184 18 C -0.125 4.125 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.122 4.122 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.151 0.849 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.742 1.291 -17.138 17.404 hybrid contribution -0.460 -0.715 1.120 1.406 sum 2.282 0.576 -16.019 16.191 Atomic orbital electron populations 1.21442 0.95731 0.99381 1.00954 1.21940 0.96685 1.00004 0.99144 1.18943 0.93459 0.89600 0.86836 0.98959 1.21259 1.30487 1.11467 0.90915 0.92870 1.25626 0.95958 0.95910 1.01025 1.70015 1.40169 1.25322 1.20733 0.85681 0.79104 0.78724 0.78528 1.19518 1.21199 1.20107 1.60755 1.04983 1.62923 1.03340 1.21796 0.95983 0.96473 0.91311 1.20658 0.97287 1.01469 0.91951 1.20878 0.97260 0.97624 0.96617 1.22090 1.00678 0.97286 0.98334 1.20454 0.96849 0.98527 0.96666 1.21597 0.98804 0.97937 0.97064 1.21616 0.97322 1.00209 0.96562 1.20422 0.93485 0.97838 1.00468 0.93754 0.93238 0.93840 0.92059 0.95954 0.93189 0.84914 0.93394 0.97154 0.91481 0.91044 0.88487 0.89994 0.91060 0.91595 0.90305 0.90397 0.92685 0.90144 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.39 71.98 0.68 -4.33 16 2 C -0.14 -6.66 5.50 30.59 0.17 -6.49 16 3 C 0.22 11.36 2.33 44.17 0.10 11.46 16 4 H -0.01 -0.44 7.86 -2.39 -0.02 -0.46 16 5 C -0.50 -27.93 7.35 25.60 0.19 -27.74 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.72 5.22 84.66 0.44 1.16 16 8 N -0.92 -53.57 11.39 21.45 0.24 -53.33 16 9 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 N -0.69 -29.90 6.25 -495.47 -3.10 -33.00 16 14 C 0.07 2.76 5.46 86.30 0.47 3.23 16 15 C -0.08 -2.24 5.44 29.85 0.16 -2.08 16 16 C -0.12 -3.17 5.09 -15.10 -0.08 -3.24 16 17 C -0.17 -3.91 9.37 27.03 0.25 -3.65 16 18 C -0.09 -1.62 6.11 29.66 0.18 -1.44 16 19 C -0.12 -1.91 6.01 30.74 0.18 -1.73 16 20 C -0.12 -2.27 6.01 30.73 0.18 -2.08 16 21 C -0.09 -1.94 5.80 29.65 0.17 -1.77 16 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.88 6.42 -2.39 -0.02 1.86 16 24 H 0.04 2.04 7.05 -2.39 -0.02 2.02 16 25 H 0.06 3.34 6.25 -2.39 -0.01 3.33 16 26 H 0.02 0.99 7.24 -2.39 -0.02 0.97 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.33 13.45 6.56 -89.69 -0.59 12.86 16 29 H 0.05 1.91 8.10 -2.38 -0.02 1.89 16 30 H 0.01 0.40 7.23 -2.39 -0.02 0.38 16 31 H 0.07 1.88 7.80 -2.39 -0.02 1.86 16 32 H 0.07 2.13 8.11 -2.38 -0.02 2.11 16 33 H 0.10 2.32 7.74 -2.91 -0.02 2.29 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.14 8.12 -2.39 -0.02 1.12 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.54 8.11 -2.38 -0.02 1.52 16 Total: -1.00 -59.67 317.29 2.67 -57.01 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.38 Total: 21.76 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.11 Total: -38.70 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.85 Total: -86.33 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -59.67 2.67 -57.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051756330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.968 kcal (2) G-P(sol) polarization free energy of solvation -59.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds