Wall clock time and date at job start Sun Mar 29 2020 21:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99955 * 2 1 4 4 H 1.48500 * 109.47040 * 270.00563 * 3 2 1 5 5 H 1.48499 * 109.46964 * 30.00511 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00446 * 3 2 1 7 7 C 1.37874 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00263 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47418 * 179.97438 * 9 7 2 11 11 N 1.46892 * 109.47122 * 174.62317 * 10 9 7 12 12 C 1.46901 * 110.99797 * 74.65503 * 11 10 9 13 13 C 1.52991 * 117.50017 * 2.75646 * 12 11 10 14 14 C 1.52997 * 117.49784 * 294.09523 * 12 11 10 15 15 C 1.46905 * 111.00141 * 198.60583 * 11 10 9 16 16 C 1.53000 * 109.47390 * 176.04806 * 15 11 10 17 17 C 1.52996 * 109.47271 * 179.97438 * 16 15 11 18 18 C 1.53004 * 109.46807 * 60.00269 * 17 16 15 19 19 C 1.52998 * 109.47053 * 299.99524 * 18 17 16 20 20 C 1.52996 * 109.46853 * 56.04696 * 15 11 10 21 21 H 0.96997 * 120.00250 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46840 * 59.99240 * 9 7 2 23 23 H 1.08995 * 109.46982 * 299.99740 * 9 7 2 24 24 H 1.09007 * 109.46441 * 54.62452 * 10 9 7 25 25 H 1.08992 * 109.47195 * 294.62769 * 10 9 7 26 26 H 1.09001 * 115.54817 * 148.43043 * 12 11 10 27 27 H 1.09006 * 117.50151 * 0.02562 * 13 12 11 28 28 H 1.08998 * 117.50090 * 145.02109 * 13 12 11 29 29 H 1.08997 * 117.50079 * 214.98128 * 14 12 11 30 30 H 1.09001 * 117.50078 * 0.02562 * 14 12 11 31 31 H 1.08998 * 109.46897 * 296.04830 * 15 11 10 32 32 H 1.09004 * 109.46886 * 300.00243 * 16 15 11 33 33 H 1.09001 * 109.46773 * 60.00138 * 16 15 11 34 34 H 1.09000 * 109.47034 * 300.00609 * 17 16 15 35 35 H 1.08992 * 109.47236 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47005 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47453 * 60.00021 * 18 17 16 38 38 H 1.09000 * 109.47866 * 300.00321 * 19 18 17 39 39 H 1.09000 * 109.47556 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.47631 * 300.00083 * 20 15 11 41 41 H 1.08998 * 109.47260 * 60.00356 * 20 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4847 -2.6385 -0.1313 12 6 6.1259 -2.2349 1.1272 13 6 5.2167 -1.9582 2.3262 14 6 5.9051 -0.7978 1.6033 15 6 5.9722 -3.9522 -0.5728 16 6 7.4851 -3.8876 -0.7916 17 6 7.9928 -5.2559 -1.2508 18 6 7.3039 -5.6420 -2.5613 19 6 5.7911 -5.7066 -2.3425 20 6 5.2832 -4.3376 -1.8834 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8888 23 1 3.8745 -0.6801 -0.8911 24 1 3.5814 -3.1775 -0.8387 25 1 3.7393 -3.1216 0.9333 26 1 7.0974 -2.6873 1.3261 27 1 4.1428 -2.0761 2.1814 28 1 5.5902 -2.2282 3.3140 29 1 6.7312 -0.3048 2.1158 30 1 5.2837 -0.1519 0.9829 31 1 5.7468 -4.6982 0.1893 32 1 7.7104 -3.1415 -1.5537 33 1 7.9758 -3.6130 0.1421 34 1 7.7673 -6.0016 -0.4884 35 1 9.0705 -5.2098 -1.4071 36 1 7.6653 -6.6170 -2.8882 37 1 7.5293 -4.8963 -3.3237 38 1 5.5656 -6.4523 -1.5801 39 1 5.3003 -5.9820 -3.2759 40 1 4.2054 -4.3836 -1.7275 41 1 5.5086 -3.5916 -2.6454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051880786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:05 Heat of formation + Delta-G solvation = 23.974295 kcal Electronic energy + Delta-G solvation = -17808.273265 eV Core-core repulsion = 15302.662094 eV Total energy + Delta-G solvation = -2505.611171 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.55118 -37.34309 -33.44277 -32.84800 -30.99743 -30.29911 -27.97896 -24.77785 -22.68646 -22.10385 -21.77564 -20.29061 -19.76277 -19.18725 -16.92996 -16.28234 -15.47094 -14.54499 -14.32976 -14.15685 -13.94821 -13.87683 -13.08421 -12.71763 -12.54044 -12.11301 -12.02217 -11.83890 -11.65529 -11.15923 -11.09526 -11.00241 -10.66182 -10.62418 -10.51999 -10.07786 -10.05319 -9.89437 -9.81995 -9.61272 -9.41595 -8.94923 -8.46625 -7.57034 -6.01072 -3.98068 3.34965 3.41889 3.45862 4.06791 4.47701 4.49145 4.77131 4.80115 5.00474 5.24708 5.32338 5.34917 5.36909 5.42409 5.54125 5.56795 5.57337 5.59622 5.69815 5.80256 5.91636 6.02143 6.11507 6.14223 6.19683 6.26171 6.28250 6.29201 6.35673 6.44654 6.59828 6.61892 6.72622 6.90341 7.25990 7.41486 7.70355 7.74044 7.90873 8.56954 9.03401 9.62090 11.12494 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029670 B = 0.006760 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.485845 B = 4140.756028 C = 4668.442146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.069 0.931 9 C -0.022 4.022 10 C 0.057 3.943 11 N -0.506 5.506 12 C 0.020 3.980 13 C -0.221 4.221 14 C -0.183 4.183 15 C 0.089 3.911 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.118 4.118 21 H 0.262 0.738 22 H 0.036 0.964 23 H 0.018 0.982 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.730 -9.014 -1.074 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.060 4.060 10 C -0.069 4.069 11 N -0.228 5.228 12 C -0.090 4.090 13 C -0.260 4.260 14 C -0.221 4.221 15 C -0.019 4.019 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.156 4.156 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.036 0.964 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.126 0.874 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.696 -8.567 -1.455 17.940 hybrid contribution 0.066 0.399 0.667 0.780 sum 15.761 -8.168 -0.789 17.769 Atomic orbital electron populations 1.69915 1.06311 1.26810 1.51438 1.24973 0.94659 0.99080 0.94594 0.86797 0.80416 0.83631 0.78525 1.20357 1.21584 1.18771 1.21113 0.89588 0.94353 1.50697 0.91312 1.19993 0.96307 0.92074 0.97599 1.22421 0.83914 1.00645 0.99966 1.62061 1.07557 1.26283 1.26940 1.22588 0.98086 0.99385 0.88920 1.23669 1.01516 1.04607 0.96202 1.23472 1.02924 0.92005 1.03696 1.21529 0.94443 0.89895 0.96036 1.21639 0.94913 0.96982 1.01427 1.21520 0.99325 0.97266 0.97395 1.21542 0.95612 1.00890 0.97602 1.21534 0.95503 0.97488 1.00986 1.21726 1.00334 0.96484 0.97021 0.92818 0.94572 0.96362 0.90893 0.94735 0.87422 0.86419 0.89940 0.89832 0.86655 0.94750 0.91151 0.92211 0.92341 0.92227 0.92492 0.91938 0.92321 0.91980 0.91045 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.17 13.96 55.43 0.77 -27.39 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.31 6.44 56.52 0.36 -5.94 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C -0.02 -0.54 2.87 -27.88 -0.08 -0.62 16 10 C 0.06 1.16 4.32 -3.83 -0.02 1.14 16 11 N -0.51 -8.84 4.54 -218.73 -0.99 -9.83 16 12 C 0.02 0.32 5.76 -67.72 -0.39 -0.07 16 13 C -0.22 -3.74 9.02 -26.70 -0.24 -3.98 16 14 C -0.18 -3.13 9.55 -26.70 -0.26 -3.39 16 15 C 0.09 1.30 1.94 -67.71 -0.13 1.16 16 16 C -0.11 -1.37 5.10 -26.73 -0.14 -1.50 16 17 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 18 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 19 C -0.12 -1.32 5.93 -26.70 -0.16 -1.48 16 20 C -0.12 -1.66 4.93 -26.70 -0.13 -1.79 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.04 0.87 2.87 -51.93 -0.15 0.72 16 23 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 24 H 0.07 1.50 5.38 -51.92 -0.28 1.22 16 25 H 0.03 0.72 6.12 -51.93 -0.32 0.40 16 26 H 0.11 1.51 5.99 -51.93 -0.31 1.20 16 27 H 0.12 2.31 4.90 -51.93 -0.25 2.06 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.12 2.31 5.32 -51.93 -0.28 2.04 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.71 6.13 -51.93 -0.32 0.39 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.10 5.98 -51.93 -0.31 0.79 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -29.87 299.12 -9.52 -39.39 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.85 Total: 2.40 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.29 Total: -26.49 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.22 Total: -37.23 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.87 -9.52 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051880786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.366 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds